Hedda J. Weitz

Biological tools for the assessment of contaminated land: applied soil ecotoxicology

Chemical analysis alone is inadequate for comprehensively assessing the impact of soil pollution on biota. The term bioavailability can only be applied in a context specific to a target biological receptor or a proven chemical surrogate. Integration of biological and chemical data can often yield significant advances in hazard assessment and act as a suitable baseline for making site-specific risk assessments. Here, the value of biological techniques is discussed and their application described. The relative merit of test selection is considered and the new direction being developed in sublethal assessments. Currently, however, one of the major limitations is the seeming lack of flexibility of many assays in that they are either applicable to agricultural systems or industrial scenarios, but rarely to both. As a consequence, few assays have internationally adopted protocols. The introduction of new methods and the continued improvement and refinement of assays make this area of soil science dynamic and responsive.

Draft Genome Sequence of Aneurinibacillus migulanus Strain Nagano

ABSTRACT Aneurinibacillus migulanus is characterized by inhibition of growth of a range of plant-pathogenic bacteria and fungi. Here, we report the high-quality draft genome sequences of A. migulanus Nagano.

Draft Genome Sequence of Aneurinibacillus migulanus NCTC 7096

ABSTRACT Aneurinibacillus migulanus has biocontrol activities against fungal, fungus-like, and bacterial plant pathogens with different levels of efficacy depending on the target pathogens. Here, we report the high-quality draft genome sequence of A. migulanus NCTC 7096.

Increased biological activity of aneurinibacillus migulanus strains correlates with the production of new gramicidin secondary metabolites

The soil-borne gram-positive bacteria Aneurinibacillus migulanus strain Nagano shows considerable potential as a biocontrol agent against plant diseases. In contrast, A. migulanus NCTC 7096 proved less effective for inhibition of plant pathogens. Nagano strain exerts biocontrol activity against some gram-positive and gram-negative bacteria, fungi and oomycetes through the production of gramicidin S (GS). Apart from the antibiotic effects, GS increases the rate of evaporation from the plant surface, reducing periods of surface wetness and thereby indirectly inhibiting spore germination. To elucidate the molecular basis of differential biocontrol abilities of Nagano and NCTC 7096, we compared GS production and biosurfactant secretion in addition to genome mining of the genomes. Our results proved that: (i) Using oil spreading, blood agar lysis, surface tension and tomato leaves wetness assays, Nagano showed increased biosurfactant secretion in comparison with NCTC 7096, (ii) Genome mining indicated the presence of GS genes in both Nagano and NCTC 7096 with two amino acid units difference between the strains: T342I and P419S. Using 3D models and the DUET server, T342I and P419S were predicted to decrease the stability of the NCTC 7096 GS synthase, (iii) Nagano produced two additional GS-like molecules GS-1155 (molecular weight 1155) and GS-1169 (molecular weight 1169), where one or two ornithine residues replace lysine in the peptide. There was also a negative correlation between surface tension and the quantity of GS-1169 present in Nagano, and (iv) the Nagano genome had a full protein network of exopolysaccharide biosynthesis in contrast to NCTC 7096 which lacked the first enzyme of the network. NCTC 7096 is unable to form biofilms as observed for Nagano. Different molecular layers, mainly gramicidin secondary metabolite production, account for differential biocontrol abilities of Nagano and NCTC 7096. This work highlighted the basis of differential biological control abilities between strains belonging to the same species and demonstrates techniques useful to the screening of effective biocontrol strains for environmentally friendly secondary metabolites that can be used to manage plant pathogens in the field.