Hend A. Alwathnani

Phytoremediation of Heavy and Transition Metals Aided by Legume-Rhizobia Symbiosis

Legumes are important for nitrogen cycling in the environment and agriculture due to the ability of nitrogen fixation by rhizobia. In this review, we introduce an important and potential role of legume-rhizobia symbiosis in aiding phytoremediation of some metal contaminated soils as various legumes have been found to be the dominant plant species in metal contaminated areas. Resistant rhizobia used for phytoremediation could act on metals directly by chelation, precipitation, transformation, biosorption and accumulation. Moreover, the plant growth promoting (PGP) traits of rhizobia including nitrogen fixation, phosphorus solubilization, phytohormone synthesis, siderophore release, and production of ACC deaminase and the volatile compounds of acetoin and 2, 3-butanediol may facilitate legume growth while lessening metal toxicity. The benefits of using legumes inoculated with naturally resistant rhizobia or recombinant rhizobia with enhanced resistance, as well as co-inoculation with other plant growth promoting bacteria (PGPB) are discussed. However, the legume-rhizobia symbiosis appears to be sensitive to metals, and the effect of metal toxicity on the interaction between legumes and rhizobia is not clear. Therefore, to obtain the maximum benefits from legumes assisted by rhizobia for phytoremediation of metals, it is critical to have a good understanding of interactions between PGP traits, the symbiotic plant-rhizobia relationship and metals.

Draft Genome Sequence of Halomonas sp. Strain HAL1, a Moderately Halophilic Arsenite-Oxidizing Bacterium Isolated from Gold-Mine Soil

We report the draft genome sequence of arsenite-oxidizing Halomonas sp. strain HAL1, isolated from the soil of a gold mine. Genes encoding proteins involved in arsenic resistance and transformation, phosphate utilization and uptake, and betaine biosynthesis were identified. Their identification might help in understanding how arsenic and phosphate metabolism are intertwined.

Biological control of fusarium wilt of tomato by antagonist fungi and cyanobacteria

Biological control of Fusarium oxysporum f. sp . lycopersici (FOL) causing wilt disease of tomato was studied in vitro as well as under pot conditions. Dual culture technique showed that Aspergillus niger, Penicillium citrinum, Penicillium sp. and Trichoderma harzianum inhibited the radial colony growth of the test pathogen. Methanol extract of Nostoc linckia and Phormidium autumnale showed moderate and minor zone of inhibition. Maximum seed germination was observed in seeds treated with N. linckia (93%), whereas, T. harzianum, P. autumnale, P. citrinum showed 80% seed germination, while A. niger treated seeds showed 50% germination. Under pot conditions, the plant heights, fresh and dry weight of plants were found to be increased significantly (p ≤ 0.05) in all treatments except in P. autumnale amended soil. Similar results were observed in chlorophyll (a+b) content of treated plants. Maximum control of wilt disease was observed with T. harzianum (44.4%) treated plants as compared to FOL inoculated plants. Whereas, effectiveness of the other antagonists were recorded in the following order: A. niger (35.6%), N. linckia (33.3%), P. citrinum (24.4%), and P. autumnale (0.9 %). Key words : Biological control, fusarium wilt, tomato, antagonist fungi, cyanobacteria

Advantages and challenges of increased antimicrobial copper use and copper mining

Copper is a highly utilized metal for electrical, automotive, household objects, and more recently as an effective antimicrobial surface. Copper-containing solutions applied to fruits and vegetables can prevent bacterial and fungal infections. Bacteria, such as Salmonellae and Cronobacter sakazakii, often found in food contamination, are rapidly killed on contact with copper alloys. The antimicrobial effectiveness of copper alloys in the healthcare environment against bacteria causing hospital-acquired infections such as methicillin-resistant Staphylococcus aureus (MRSA), Escherichia coli O157:H7, and Clostridium difficile has been described recently. The use of copper and copper-containing materials will continue to expand and may lead to an increase in copper mining and production. However, the copper mining and manufacturing industry and the consumer do not necessarily enjoy a favorable relationship. Open pit mining, copper mine tailings, leaching products, and deposits of toxic metals in the environment often raises concerns and sometimes public outrage. In addition, consumers may fear that copper alloys utilized as antimicrobial surfaces in food production will lead to copper toxicity in humans. Therefore, there is a need to mitigate some of the negative effects of increased copper use and copper mining. More thermo-tolerant, copper ion-resistant microorganisms could improve copper leaching and lessen copper groundwater contamination. Copper ion-resistant bacteria associated with plants might be useful in biostabilization and phytoremediation of copper-contaminated environments. In this review, recent progress in microbiological and biotechnological aspects of microorganisms in contact with copper will be presented and discussed, exploring their role in the improvement for the industries involved as well as providing better environmental outcomes.

Cyanobacteria in Soils from a Mojave Desert Ecosystem

ABSTRACT. The Fort Irwin National Training Center in the Mojave Desert of California contains soils that represent a diversity of disturbance regimes, including some soil sites that have been protected from anthropogenic disturbance for many years. Previous studies of the soils of this military installation discussed biogeography and ecology of the crusts but did not conduct detailed study of the species present. In this study, we selected 6 sites in and around the Fort Irwin Training Center to be the subject of intensive isolation efforts. These sites contained at least some development of microbiotic soil crust. Out of the more than 90 cyanobacterial isolates characterized, only 23 distinctive morphospecies were differentiated. Of these, only 13 were identified to a previously described species, the others being comparable to previously described aquatic species (cf.) or so dissimilar to described taxa that they were given numbers as identification. Leptolyngbya was the most species rich and also the most commonly isolated genus. Twelve filamentous genera were found; no coccoid representatives occurred in our samples. All taxa are described and illustrated. This study is significant as it is the first since the 1960s to examine cyanobacterial taxonomy of Mojave Desert soils in a systematic fashion. Our unidentified taxa are very likely new species but will require molecular sequence analysis before they can be named.

A role for copper in protozoan grazing – two billion years selecting for bacterial copper resistance

The Great Oxidation Event resulted in integration of soft metals in a wide range of biochemical processes including, in our opinion, killing of bacteria by protozoa. Compared to pressure from anthropologic copper contamination, little is known on impacts of protozoan predation on maintenance of copper resistance determinants in bacteria. To evaluate the role of copper and other soft metals in predatory mechanisms of protozoa, we examined survival of bacteria mutated in different transition metal efflux or uptake systems in the social amoeba Dictyostelium discoideum. Our data demonstrated a strong correlation between the presence of copper/zinc efflux as well as iron/manganese uptake, and bacterial survival in amoebae. The growth of protozoa, in turn, was dependent on bacterial copper sensitivity. The phagocytosis of bacteria induced upregulation of Dictyostelium genes encoding the copper uptake transporter p80 and a triad of Cu(I)‐translocating PIB‐type ATPases. Accumulated Cu(I) in Dictyostelium was monitored using a copper biosensor bacterial strain. Altogether, our data demonstrate that Cu(I) is ultimately involved in protozoan predation of bacteria, supporting our hypothesis that protozoan grazing selected for the presence of copper resistance determinants for about two billion years.

Soil characteristics influence the radionuclide uptake of different plant species

The key point of food plant agriculture is how to regulate the harmonious relationship between the soil and the plant environment. This study deals with radionuclide uptake by two food plant and two fruit tree species in relation to the geochemical characteristics of the soil. Uranium and thorium content was determined in coastal black sand and inland cultivated soils. Four commonly cultivated species Eruca sativa, Lycopersicon esculentum, Psidium guajava and Mangifera indica were investigated. Physical and chemical properties of the soil were analysed in relation to uranium and thorium uptake by plants. The results revealed the ability of plants to accumulate uranium and thorium in their edible portions. The absorbed radionuclides were positively correlated with their concentrations in the soil and the geochemical characteristics of the soil. The transfer of radioactive elements from soil to plant is a complex process that can be regulated by controlling the geochemical characteristics of the soil, including pH, clay, silt and organic matter content that reduce the bioavailability of soil radionuclides to plants, and in turn reduce the risks of biota and human exposure to radionuclide contamination.

Evaluation of biological control potential of locally isolated antagonist fungi against Fusarium oxysporum under in vitro and pot conditions

Fusarium oxysporum f sp. phaseoli is responsible for wilt disease of Phaseolus vulgaris L., which results in extensive damage to the crop. Biological control of soil borne plant pathogens is a potential alternative to the use of environment harming chemical pesticides. Therefore, the study was undertaken to determine the potential of locally isolated antagonist fungi (Aspergillus niger, Penicillium citrinum, Trichoderma harzianum, and Trichoderma viride) to manage fusarium wilt of common bean. Under in vitro condition all antagonist species had inhibited the radial growth of pathogen; however in the case of A. niger this inhibition was insignificant. The maximum mycelial growth of all antagonists was recorded at 25°C and decreased above this temperature. Under pot conditions, all treatments were able to boost plant growth and provide significant reductions in disease levels. The highest plant growth and chlorophyll a+b content were observed in plants treated with T. harzianum, followed by T. viride, P. citrinum and A. niger. The effect of these treatments on fusarium wilt was found to be inversely proportional to the plant growth. Maximum control of wilt disease was observed in bean plants treated with T. harzianum (71.4%). Effectiveness of the other antagonists was recorded in the following order: T. viride (67.8%), P. citrinum (53.5%) and A. niger (35.7%).

Hazards of low dose flame-retardants (BDE-47 and BDE-32): Influence on transcriptome regulation and cell death in human liver cells.

We have evaluated the in vitro low dose hepatotoxic effects of two flame-retardants (BDE-47 and BDE-32) in HepG2 cells. Both congeners declined the viability of cells in MTT and NRU cell viability assays. Higher level of intracellular reactive oxygen species (ROS) and dysfunction of mitochondrial membrane potential (ΔΨm) were observed in the treated cells. Comet assay data confirmed the DNA damaging potential of both congeners. BDE-47 exposure results in the appearance of subG1 apoptotic peak (30.1%) at 100 nM, while BDE-32 arrested the cells in G2/M phase. Among the set of 84 genes, BDE-47 induces downregulation of majority of mRNA transcripts, whilst BDE-32 showed differential expression of transcripts in HepG2. The ultrastructural analysis revealed mitochondrial swelling and degeneration of cristae in BDE-47 and BDE-32 treated cells. Overall our data demonstrated the hepatotoxic potential of both congeners via alteration of vital cellular pathways.

Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark

Six strains of Enterococcus faecalis (S1, S12, S17, S18, S19 and S32) were isolated from copper fed pigs in Denmark. These Gram-positive bacteria within the genus Enterococcus are able to survive a variety of physical and chemical challenges by the acquisition of diverse genetic elements. The genome of strains S1, S12, S17, S18, S19 and S32 contained 2,615, 2,769, 2,625, 2,804, 2,853 and 2,935 protein-coding genes, with 41, 42, 27, 42, 32 and 44 genes encoding antibiotic and metal resistance, respectively. Differences between Cu resistant and sensitive E. faecalis strains, and possible co-transfer of Cu and antibiotic resistance determinants were detected through comparative genome analysis.