Henrik F. Clausen

Three new co-crystals of hydroquinone: crystal structures and Hirshfeld surface analysis of intermolecular interactions

Hydroquinone (benzene-1,4-diol or quinol) is reported here to form co-crystals in different ratios with propan-2-ol, N,N-dimethylacetamide (DMA) and N,N-diethylformamide (DEF). Investigation of intermolecular interactions and crystal packing via Hirshfeld surface analysis reveals that more than two-thirds of the close contacts are associated with relatively weak H⋯H, C⋯H and H⋯C interactions. The use of Hirshfeld surfaces in combination with fingerprint plots demonstrates that these weak interactions are important for both local packing and crystal packing. The complexes highlight the way in which electrostatic complementarity to a large extent governs the hydrogen bonding pattern in molecular crystals.

Synthesis, Crystal Structure, Atomic Hirshfeld Surfaces, and Physical Properties of Hexagonal CeMnNi4

The hexagonal polymorph of CeMnNi(4) has been synthesized using cold crucible, high-frequency induction melting with subsequent Czochralski crystal pulling. Single-crystal X-ray diffraction, multitemperature synchrotron powder X-ray diffraction (90 to 600 K), and neutron powder diffraction data have been measured to establish the detailed crystal structure and in particular the location of the Mn atoms. The neutron diffraction data provide sufficient scattering contrast between Mn and Ni to establish that the 2c site has an occupancy of 13% Mn atoms, while the 3g site has an occupancy of 25% Mn atoms. Thus, the crystal structure is complex with considerable disorder. Rietveld refinement of the multitemperature synchrotron data establishes a near linear thermal expansion coefficient of 13.9(3) × 10(-6) K(-1) and 14.9(3) × 10(-6) K(-1) for the a and c axes, respectively. Atomic Hirshfeld surfaces are introduced as a new tool to investigate the atomic coordination and interactions in intermetallic compounds. The atomic displacement parameters (ADPs) are observed to be much larger for the heavy Ce atom than for the lighter Mn and Ni atoms, and this correlates with the large atomic Hirshfeld volume of Ce relative to Mn and Ni. The fit of a Debye model to the ADPs gives θ(D) = 312(3) K. Magnetic susceptibility data measured between 2 and 350 K indicate ferromagnetic ordering at 122(2) K (Weiss constant) based on a linear fit of the inverse magnetic susceptibility in the paramagnetic region. Transport properties were measured on a polycrystalline sample containing CeO(2) (2.8%) and Ni (7.7%) impurities. The electrical conductivity is observed to be metallic with a distinct kink in the data around 120 K coinciding with the observed Curie temperature. The lattice thermal conductivity (κ(L)) increases from 0.5 W/Km at 2 K to 8 W/Km at 50 K, and the relatively moderate value of κ(L) probably reflects the significant structural disorder.

Helium cryostat synchrotron charge densities determined using a large CCD detector – the upgraded beamline D3 at DESY

A 165 mm Mar CCD detector has been fitted on a large Huber four-circle diffractometer together with a helium cryostat at beamline D3 at Hasylab, DESY in Hamburg. This setup allows fast collection of accurate, short-wavelength, very low temperature X-ray diffraction data for charge-density analysis. As a test example, diffraction data have been collected in 10 h on a hydrogen-bonded network system with 15 unique atoms, and the electron density was modelled with the multipole formalism in an X–N procedure using matching-temperature neutron diffraction data collected at Institut Laue Langevin, Grenoble in France.

Intermolecular interactions and electrostatic properties of the β-hydroquinone apohost: implications for supramolecular chemistry.

The crystal structure of the β-polymorph of hydroquinone (β-HQ), the apohost of a large family of clathrates, is reported with a specific focus on intermolecular interactions and the electrostatic nature of its cavity. Hirshfeld surface analysis reveals subtle close contacts between two interconnecting HQ networks, and the local packing and related close contacts were examined by breakdown of the fingerprint plot. An experimental multipole model containing anisotropic thermal parameters for hydrogen atoms has been successfully refined against 15(2) K single microcrystal synchrotron X-ray diffraction data. The experimental electron density model has been compared with a theoretical electron density calculated with the molecule embedded in its own crystal field. Hirshfeld charges, interaction energies and the electrostatic potential calculated for both models are qualitatively in good agreement, but small differences in the electrostatic potential persist due to charge transfer from all hydrogen atoms to the oxygen atoms in the theoretical model. The electrostatic potential in the center of the cavity is positive, very shallow and highly symmetric, suggesting that the inclusion of polar molecules in the void will involve a balance between opposing effects. The electric field is by symmetry zero in the center of the cavity, increasing to a value of 0.0185 e/Å(2) (0.27 V/Å) 1 Å along the 3-fold axis and 0.0105 e/Å(2) (0.15 V/Å) 1 Å along the perpendicular direction. While these values are substantial in a macroscopic context, they are quite small for a molecular cavity and are not expected to strongly polarize a guest molecule.

Host perturbation in a β-hydroquinone clathrate studied by combined X-ray/neutron charge-density analysis: implications for molecular inclusion in supramolecular entities.

X-ray/neutron (X/N) diffraction data measured at very low temperature (15 K) in conjunction with ab initio theoretical calculations were used to model the crystal charge density (CD) of the host-guest complex of hydroquinone (HQ) and acetonitrile. Due to pseudosymmetry, information about the ordering of the acetonitrile molecules within the HQ cavities is present only in almost extinct, very weak diffraction data, which cannot be measured with sufficient accuracy even by using the brightest X-ray and neutron sources available, and the CD model of the guest molecule was ultimately based on theoretical calculations. On the other hand, the CD of the HQ host structure is well determined by the experimental data. The neutron diffraction data provide hydrogen anisotropic thermal parameters and positions, which are important to obtain a reliable CD for this light-atom-only crystal. Atomic displacement parameters obtained independently from the X-ray and neutron diffraction data show excellent agreement with a |ΔU| value of 0.00058 Å(2) indicating outstanding data quality. The CD and especially the derived electrostatic properties clearly reveal increased polarization of the HQ molecules in the host-guest complex compared with the HQ molecules in the empty HQ apohost crystal structure. It was found that the origin of the increased polarization is inclusion of the acetonitrile molecule, whereas the change in geometry of the HQ host structure following inclusion of the guest has very little effect on the electrostatic potential. The fact that guest inclusion has a profound effect on the electrostatic potential suggests that nonpolarizable force fields may be unsuitable for molecular dynamics simulations of host-guest interaction (e.g., in protein-drug complexes), at least for polar molecules.