Henrique O. Sawakuchi

Species composition and similarities among anuran assemblages of forest sites in southeastern Brazil

Neotropical forests show high anuran species richness, but some Brazilian forest formations, like cerradao, semideciduous forests and restingas, remain poorly known. The composition of anuran species were determined for four forest sites belonging to different biomes in southeastern Brazil, based on two complementary techniques (visual encounter survey and survey on breeding sites), both applied simultaneously. A total of 60 anuran species belonging to eight families was recorded. Species richness and levels of endemism were higher in the Atlantic rainforest site. Sites located in the Cerrado domain were more alike than those located in the Atlantic Forest Domain. Similarity in anuran species composition was negatively correlated to the geographical distance among sites, which explains part of similarities in species composition. Factors affecting these occurrence patterns are discussed. One species (if its identity is confirmed) is considered Data Deficient by IUCN (The World Conservation Union), though it is not included in the Brazilian list of threatened amphibians. The presence of certain species with special habitats and microclimate requirements (bioindicators) suggests well-preserved ecosystems.

The reactivity of plant‐derived organic matter and the potential importance of priming effects along the lower Amazon River

Here we present direct measurements of the biological breakdown of 13C-labeled substrates to CO2 at seven locations along the lower Amazon River, from Obidos to the mouth. Dark incubation experiments were performed at high and low water periods using vanillin, a lignin phenol derived from vascular plants, and at the high water period using four different 13C-labeled plant litter leachates. Leachates derived from oak wood were degraded most slowly with vanillin monomers, macrophyte leaves, macrophyte stems, and whole grass leachates being converted to CO2 1.2, 1.3, 1.7, and 2.3 times faster, respectively, at the upstream boundary, Obidos. Relative to Obidos, the sum degradation rate of all four leachates was 3.3 and 2.6 times faster in the algae-rich Tapajos and Xingu Rivers, respectively. Likewise, the leachates were broken down 3.2 times more quickly at Obidos when algal biomass from the Tapajos River was simultaneously added. Leachate reactivity similarly increased from Obidos to the mouth with leachates breaking down 1.7 times more quickly at Almeirim (midway to the mouth) and 2.8 times more quickly across the river mouth. There was no discernible correlation between in situ nutrient levels and remineralization rates, suggesting that priming effects were an important factor controlling reactivity along the continuum. Further, continuous measurements of CO2, O2, and conductivity along the confluence of the Tapajos and Amazon Rivers and the Xingu and Jaraucu Rivers revealed in situ evidence for enhanced O2 drawdown and CO2 production along the mixing zone of these confluences.

Oxidative mitigation of aquatic methane emissions in large Amazonian rivers

The flux of methane (CH4 ) from inland waters to the atmosphere has a profound impact on global atmospheric greenhouse gas (GHG) levels, and yet, strikingly little is known about the dynamics controlling sources and sinks of CH4 in the aquatic setting. Here, we examine the cycling and flux of CH4 in six large rivers in the Amazon basin, including the Amazon River. Based on stable isotopic mass balances of CH4 , inputs and outputs to the water column were estimated. We determined that ecosystem methane oxidation (MOX) reduced the diffusive flux of CH4 by approximately 28-96% and varied depending on hydrologic regime and general geochemical characteristics of tributaries of the Amazon River. For example, the relative amount of MOX was maximal during high water in black and white water rivers and minimal in clear water rivers during low water. The abundance of genetic markers for methane-oxidizing bacteria (pmoA) was positively correlated with enhanced signals of oxidation, providing independent support for the detected MOX patterns. The results indicate that MOX in large Amazonian rivers can consume from 0.45 to 2.07 Tg CH4 yr(-1) , representing up to 7% of the estimated global soil sink. Nevertheless, climate change and changes in hydrology, for example, due to construction of dams, can alter this balance, influencing CH4 emissions to atmosphere.

Bacterial Biogeography across the Amazon River-Ocean Continuum

Spatial and temporal patterns in microbial biodiversity across the Amazon river-ocean continuum were investigated along ∼675 km of the lower Amazon River mainstem, in the Tapajós River tributary, and in the plume and coastal ocean during low and high river discharge using amplicon sequencing of 16S rRNA genes in whole water and size-fractionated samples (0.2–2.0 μm and >2.0 μm). River communities varied among tributaries, but mainstem communities were spatially homogeneous and tracked seasonal changes in river discharge and co-varying factors. Co-occurrence network analysis identified strongly interconnected river assemblages during high (May) and low (December) discharge periods, and weakly interconnected transitional assemblages in September, suggesting that this system supports two seasonal microbial communities linked to river discharge. In contrast, plume communities showed little seasonal differences and instead varied spatially tracking salinity. However, salinity explained only a small fraction of community variability, and plume communities in blooms of diatom-diazotroph assemblages were strikingly different than those in other high salinity plume samples. This suggests that while salinity physically structures plumes through buoyancy and mixing, the composition of plume-specific communities is controlled by other factors including nutrients, phytoplankton community composition, and dissolved organic matter chemistry. Co-occurrence networks identified interconnected assemblages associated with the highly productive low salinity near-shore region, diatom-diazotroph blooms, and the plume edge region, and weakly interconnected assemblages in high salinity regions. This suggests that the plume supports a transitional community influenced by immigration of ocean bacteria from the plume edge, and by species sorting as these communities adapt to local environmental conditions. Few studies have explored patterns of microbial diversity in tropical rivers and coastal oceans. Comparison of Amazon continuum microbial communities to those from temperate and arctic systems suggest that river discharge and salinity are master variables structuring a range of environmental conditions that control bacterial communities across the river-ocean continuum.

Landscape changes in a neotropical forest-savanna ecotone zone in central Brazil: The role of protected areas in the maintenance of native vegetation.

In the Amazon-savanna ecotone in northwest Brazil, the understudied Araguaia River Basin contains high biodiversity and seasonal wetlands. The region is representative of tropical humid-dry ecotone zones, which have experienced intense land use and land cover (LULC) conversions. Here we assessed the LULC changes for the last four decades in the central portion of the Araguaia River Basin to understand the temporal changes in the landscape composition and configuration outside and inside protected areas. We conducted these analyzes by LULC mapping and landscape metrics based on patch classes. During this period, native vegetation was reduced by 26%. Forests were the most threatened physiognomy, with significant areal reduction and fragmentation. Native vegetation cover was mainly replaced by croplands and pastures. Such replacement followed spatial and temporal trends related to the implementation of protected areas and increases in population cattle herds. The creation of most protected areas took place between 1996 and 2007, the same period during which the conversion of the landscape matrix from natural vegetation to agriculture occurred. We observed that protected areas mitigate fragmentation, but their roles differ according to their location and level of protection. Still, we argue that landscape characteristics, such as suitability for agriculture, also influence landscape conversions and should be considered when establishing protected areas. The information provided in this study can guide new research on species conservation and landscape planning, as well as improve the understanding of the impacts of landscape composition and configuration changes.

The Fate of Carbon in Sediments of the Xingu and Tapajós Clearwater Rivers, Eastern Amazon

The Xingu and Tapajos rivers in the eastern Amazon are the largest clearwater systems of the Amazon basin. Both rivers have “fluvial rias” (i.e., lake-like channels) in their downstream reaches as they are naturally impounded by the Amazon mainstem. Fluvial rias are widespread in the Amazon landscape and most of the sedimentary load from the major clearwater and blackwater rivers is deposited in these channels. So far, little is known about the role of Amazon rias as a trap and reactor for organic sediments. In this study, we used organic and inorganic geochemistry, magnetic susceptibility, diatom, and pollen analyses in sediments (suspended, riverbed, and downcore) of the Xingu and Tapajos rias to investigate the effects of hydrologic variations on the carbon budget in these clearwater rivers over the Holocene. Ages of sediment deposition (~100 to 5,500 years) were constrained by optically stimulated luminescence and radiocarbon. Major elements geochemistry and concentration of total organic carbon (TOC) indicate that seasonal hydrologic variations exert a strong influence on riverine productivity and on the input and preservation of organic matter in sediments. Stable carbon isotope data (δ13C from -31.04 to -27.49‰) and pollen analysis indicate that most of the carbon buried in rias is derived from forests. In the Xingu River, diatom analysis in bottom sediments revealed 65 infrageneric taxa that are mostly well-adapted to slack oligotrophic and acidic waters. TOC values in sediment cores are similar to values measured in riverbed sediments and indicate suitable conditions for organic matter preservation in sediments of the Xingu and Tapajos rias at least since the mid-Holocene, with carbon burial rates varying from about 84 g m-2 yr-1 to 169 g m-2 yr-1. However, redox-sensitive elements in sediment core indicate alternation between anoxic/dysoxic and oxic conditions in the water-sediment interface that may be linked to abrupt changes in precipitation. The variation between anoxic/dysoxic and oxic conditions in the water-sediment interface controls organic matter mineralization and methanogenesis. Thus, such changes promoted by hydrological variations significantly affect the capacity of Amazon rias to act either as sources or sinks of carbon.

Methane and Carbon Dioxide Dynamics in the Paraguay River Floodplain (Pantanal) in Episodic Anoxia Events

Worldwide wetlands contribute to the global carbon cycle by emitting about a third of the global methane (CH4) emissions. However, CH4 and carbon dioxide (CO2) dynamics remain poorly understood in the largest tropical wetland on Earth, the Pantanal. In this chapter, we aim to characterize the CH4 and CO2 biogeochemistry in the floodplain of the Paraguay River, near Corumba, during the course of annual anoxia phenomena locally known as dequada. The strong anoxia is associated to the flooding of terrestrial habitats that enhances respiration, dissolved oxygen (DO) consumption, and methanogenesis. The extremely low DO also leads to high fish mortality in the region. CH4 and CO2 concentration in surface waters and diffusive water–air fluxes were measured in the oxbow Tuiuiu Lake and in the Paraguay River main stem in order to identify temporal and spatial patterns. The whole dataset shows that, for instance, dissolved CH4 and diffusive CH4 fluxes increased dramatically during the dequada. In the study area, CH4 emissions can reach 9–85 mg CH4 m−2 h−1 during dequada climax. Riverine anoxic waters steadily penetrate the oxbow Tuiuiu Lake, indicating water inflow from the river main stem, whereas small reminiscent patches of oxbow waters not mixing with anoxic river waters may function as survival refuges to the aquatic wildlife. Clearly, the DO distribution during several dequadas in major rivers of the Pantanal highlights the importance of geomorphology on the biogeochemistry in the riverine floodplains of the Pantanal wetland.

Using CDOM optical properties for estimating DOC concentrations and pCO 2 in the Lower Amazon River

Coloured dissolved organic matter (CDOM) is one of the major contributors to the absorption budget of most freshwaters and can be used as a proxy to assess non-optical carbon fractions such as dissolved organic carbon (DOC) and the partial pressure of carbon dioxide (pCO2). Nevertheless, riverine studies that explore the former relationships are still relatively scarce, especially within tropical regions. Here we document the spatial-seasonal variability of CDOM, DOC and pCO2, and assess the potential of CDOM absorption coefficient (aCDOM(412)) for estimating DOC concentration and pCO2 along the Lower Amazon River. Our results revealed differences in the dissolved organic matter (DOM) quality between clearwater (CW) tributaries and the Amazon River mainstream. A linear relationship between DOC and CDOM was observed when tributaries and mainstream are evaluated separately (Amazon River: N = 42, R2 = 0.74, p<0.05; CW: N = 13, R2 = 0.57, p<0.05). However, this linear relationship was not observed during periods of higher rainfall and river discharge, requiring a specific model for these time periods to be developed (N = 25, R2 = 0.58, p<0.05). A strong linear positive relation was found between aCDOM(412) and pCO2(N = 69, R2 = 0.65, p<0.05) along the lower river. pCO2 was less affected by the optical difference between tributaries and mainstream waters or by the discharge conditions when compared to CDOM to DOC relationships. Including the river water temperature in the model improves our ability to estimate pCO2 (N = 69; R2 = 0.80, p<0.05). The ability to assess both DOC and pCO2 from CDOM optical properties opens further perspectives on the use of ocean colour remote sensing data for monitoring carbon dynamics in large running water systems worldwide.