Herman Goossens

Antibiotic resistance—the need for global solutions

The causes of antibiotic resistance are complex and include human behaviour at many levels of society; the consequences affect everybody in the world. Similarities with climate change are evident. Many efforts have been made to describe the many different facets of antibiotic resistance and the interventions needed to meet the challenge. However, coordinated action is largely absent, especially at the political level, both nationally and internationally. Antibiotics paved the way for unprecedented medical and societal developments, and are today indispensible in all health systems. Achievements in modern medicine, such as major surgery, organ transplantation, treatment of preterm babies, and cancer chemotherapy, which we today take for granted, would not be possible without access to effective treatment for bacterial infections. Within just a few years, we might be faced with dire setbacks, medically, socially, and economically, unless real and unprecedented global coordinated actions are immediately taken. Here, we describe the global situation of antibiotic resistance, its major causes and consequences, and identify key areas in which action is urgently needed.

International Prospective Study of Klebsiella pneumoniae Bacteremia: Implications of Extended-Spectrum β-Lactamase Production in Nosocomial Infections

Context Worldwide prevalence of extended-spectrum -lactamase (ESBL)producing organisms is of great concern because of their broad antibiotic resistance. Contribution Analysis of consecutive cases of Klebsiella pneumoniae bacteremia at 12 hospitals on 6 continents shows that although incidence varies widely among institutions, almost one third of cases of nosocomial bacteremia and almost one half of intensive care unitbased infections were caused by ESBL-producing organisms. Patient-to-patient spread is common, and prevention requires careful attention to routine infection control measures. Cautions Specific antibiotic exposures before K. pneumoniae infection cannot be confirmed as risk factors for ESBL-related infections on the basis of this study. The Editors Since the discovery that resistance of Staphylococcus aureus to penicillin is mediated by a -lactamase, much effort has been made to create -lactam antibiotics that are stable to common -lactamases. Cephalosporin antibiotics containing an oxyimino side-chain represent a major advance in antibiotic development. The merger of the oxyimino chain and a 2-amino-5-thiazolyl nucleus (in such antibiotics as ceftriaxone, cefotaxime, and ceftazidime) resulted in stability to the effects of the common TEM-1 and SHV-1 -lactamases produced by gram-negative bacilli, such as Escherichia coli and Klebsiella pneumoniae. However, within a few years of the commercial release of these antibiotics, gram-negative bacilli (especially K. pneumoniae) that harbored mutated versions of the parent TEM and SHV enzymes were detected. These and other newly detected -lactamases (for example, the functionally similar CTX-M types) hydrolyze -lactam antibiotics containing the oxyimino side-chain. Genes encoding these extended-spectrum -lactamases (ESBLs) were carried on transferable plasmids. These plasmids frequently carried determinants of resistance to other classes of antibiotics, particularly the aminoglycosides (1, 2). Thus, ESBL-producing gram-negative bacilli were found to truly be multiresistant pathogens: The majority of these strains were resistant to all -lactam antibiotics (with the exception of cephamycins and carbapenems), most aminoglycosides, trimethoprimsulfamethoxazole, and sometimes the fluoroquinolones. Although the prevalence of ESBL production among gram-negative bacilli varies geographically (and may even vary from hospital to hospital within a city), widespread recognition of the advent of these -lactamases has been lacking (3). Previous studies of the epidemiology of ESBL-producing organisms have been largely limited to single institutions (4, 5). Because substantial information on the epidemiology of ESBL-producing K. pneumoniae or other gram-negative bacilli is lacking, we established a collaboration of researchers from 7 countries on 6 continents to prospectively enroll consecutive patients with K. pneumoniae bacteremia. Methods Study Design We performed a prospective observational study of 440 consecutive, sequentially encountered patients with K. pneumoniae bacteremia at 12 hospitals in South Africa, Taiwan, Australia, Argentina, the United States, Belgium, and Turkey. No patient was excluded from analysis. Patients were enrolled from 1 January 1996 to 31 December 1997. Patients were older than 16 years of age and had positive blood cultures for K. pneumoniae. The investigators completed a 188-item study form on each episode of K. pneumoniae bacteremia. Patients were followed for 1 month after the onset of bacteremia to assess clinical outcome, including death and infectious complications. The study was observational in that administration of antimicrobial agents and other therapeutic management was controlled by the patients physician rather than the investigators (6). The study was approved by institutional review boards as required by local hospital policy at the time of the study. Definitions All study definitions were established before data analysis. Nosocomial bacteremia was defined as K. pneumoniae bacteremia occurring more than 48 hours after admission to hospital. An episode of bacteremia was defined as the period of 14 days from the time of collection of the first blood culture positive for K. pneumoniae. Severity of acute illness was assessed at the time of the positive blood cultures by using the Pitt bacteremia score, a previously validated scoring system that is based on mental status, vital signs, requirement for mechanical ventilation, and recent cardiac arrest (Table 1) (7, 8). Severity of illness in patients in an intensive care unit at the time of onset of bacteremia was assessed by using the Acute Physiology and Chronic Health Evaluation-3 score (9). Site of infection was determined to be pneumonia, urinary tract infection, meningitis, incisional wound infection, other soft-tissue infection, intra-abdominal infection, or primary bloodstream infection according to Centers for Disease Control and Prevention definitions (10). Previous antibiotic therapy was defined as antibiotics given for at least 2 days within the 14 days before an episode of K. pneumoniae bacteremia (11). Antibiotic therapy for the episode of K. pneumoniae bacteremia was the receipt of antibiotics that are active in vitro against the blood culture isolate (that is, susceptible according to 1999 NCCLS breakpoints [12], given for at least 2 days within the first 5 days of collection of the first positive blood culture. Mortality was death from any cause within 14 days from the date of the first positive blood culture for K. pneumoniae. Table 1. The Pitt Bacteremia Score* Microbiological Analysis Production of ESBL was phenotypically determined by broth dilution using the NCCLS performance standards current as of January 1999 (12). A 3 twofold decrease in the minimal inhibitory concentration (MIC) for cefotaxime or ceftazidime tested in combination with clavulanic acid compared with its MIC when tested alone was considered phenotypic confirmation of ESBL production. For example, an isolate with a ceftazidime MIC of 8 g/mL and a ceftazidimeclavulanic acid MIC of 1 g/mL fulfills this definition of an ESBL-producing organism (12). The MICs of antibiotics commonly used in the treatment of gram-negative sepsis were determined for the ESBL-producing isolates by using the gradient diffusion method (Etest, AB Biodisk, Solna, Sweden). Pulsed-field gel electrophoresis was used to establish the genotypic relationships of ESBL-producing isolates from each hospital (11). Statistical Analysis All statistical comparisons were made by using PROPHET Statistics software, version 6.0 (ABTech-BBN Corp., Charlottesville, Virginia) or Stata software, version 7.0 (Stata Corp., College Station, Texas). For bivariate comparisons, the chi-square or Fisher exact test was used to compare categorical variables. Continuous variables were compared by using the t-test or the MannWhitney test. Length of stay before positive blood culture was missing for 10 (4%) patients, all of whom had been readmitted within 1 week of discharge. Length of stay for these 10 patients was therefore estimated by using a predictive model that assumed missing at random. Because previous receipt of antibiotics was not random, a propensity score model was used to further evaluate the effect of receipt of antibiotics containing an oxyimino group as a risk for ESBL production. The score was calculated by using a logistic model in which receipt of -lactam antibiotics containing an oxyimino group (cefuroxime, ceftriaxone, cefotaxime, ceftazidime, or aztreonam) was the dependent variable (scored as yes or no) and predictors were all available factors hypothesized to influence the receipt of antibiotic therapy (underlying patient conditions), with adjustment for center by using the indicator variables for site. Factors included in the calculation of this score were age, sex, admission from nursing home, underlying diseases (cancer, HIV infection, diabetes, or renal and liver disease), previous surgery, use of corticosteroids, presence of a central line, mechanical ventilatory support, presence of a nasogastric tube, and the indicator variables for site. A logistic model clustered on the patient that used receipt of antibiotics containing an oxyimino group and the quintile stratified score was then used to evaluate the risk for ESBL production. Role of the Funding Source Merck and Company provided support for laboratory studies but played no role in study design, conduct of the study, interpretation of the results, or approval of the study before publication. Results During the study period, 455 episodes of K. pneumoniae bacteremia occurred in 440 patients; of these, 202 (44.4%) episodes in 196 patients were community acquired and 253 (55.6%) episodes in 244 patients were nosocomially acquired. Table 2 shows the characteristics of the participants. Table 2. Characteristics of 244 Patients with Nosocomial Klebsiella pneumoniae Bacteremia Of the episodes of K. pneumoniae bacteremia, 18.7% (85 of 455) were due to ESBL-producing organisms and 81.1% (369 of 455) were due to nonESBL-producing organisms. One additional episode involved an isolate that showed a markedly elevated MIC for the oxyimino -lactam antibiotics but no decrease in MIC with the addition of clavulanic acid. This isolate had an MIC for cephamycin antibiotics in the resistant range and may have possessed an AmpC-like enzyme. This episode was excluded from further analysis. Seventy-eight of 253 (30.8%) episodes of nosocomial bacteremia were due to ESBL-producing organisms. Table 3 shows the sites of infection associated with nosocomial ESBL-producing K. pneumoniae bacteremia. Fewer episodes of community-acquired K. pneumoniae bacteremia (3.5% [7 of 202]) were due to ESBL-producing organisms (P <0.001) (risk ratio, 8.9 [95% CI, 4.2 to 18.8]). Of the 253 episodes of nosocomial bacteremia, 69 were acquired in the intensive care unit. Of these 69 episodes, 30 (43.5%) episodes o

Antibiotic Therapy for Klebsiella pneumoniae Bacteremia: Implications of Production of Extended-Spectrum β-Lactamases

The prevalence of extended-spectrum beta -lactamase (ESBL) production by Klebsiella pneumonia approaches 50% in some countries, with particularly high rates in eastern Europe and Latin America. No randomized trials have ever been performed on treatment of bacteremia due to ESBL-producing organisms; existing data comes only from retrospective, single-institution studies. In a prospective study of 455 consecutive episodes of Klebsiella pneumoniae bacteremia in 12 hospitals in 7 countries, 85 episodes were due to an ESBL-producing organism. Failure to use an antibiotic active against ESBL-producing K. pneumoniae was associated with extremely high mortality. Use of a carbapenem (primarily imipenem) was associated with a significantly lower 14-day mortality than was use of other antibiotics active in vitro. Multivariate analysis including other predictors of mortality showed that use of a carbapenem during the 5-day period after onset of bacteremia due to an ESBL-producing organism was independently associated with lower mortality. Antibiotic choice is particularly important in seriously ill patients with infections due to ESBL-producing K. pneumoniae.

Helicobacter pylori resistance to antibiotics in Europe and its relationship to antibiotic consumption

Objective Resistance to antibiotics is the major cause of treatment failure of Helicobacter pylori infection. A study was conducted to assess prospectively the antibacterial resistance rates of H pylori in Europe and to study the link between outpatient antibiotic use and resistance levels in different countries. Design Primary antibiotic resistance rates of H pylori were determined from April 2008 to June 2009 in 18 European countries. Data on yearly and cumulative use over several years of systemic antibacterial agents in ambulatory care for the period 2001–8 were expressed in Defined Daily Doses (DDD) per 1000 inhabitants per day. The fit of models and the degree of ecological association between antibiotic use and resistance data were assessed using generalised linear mixed models. Results Of 2204 patients included, H pylori resistance rates for adults were 17.5% for clarithromycin, 14.1% for levofloxacin and 34.9% for metronidazole, and were significantly higher for clarithromycin and levofloxacin in Western/Central and Southern Europe (>20%) than in Northern European countries (<10%). Model fit improved for each additional year of antibiotic use accumulated, but the best fit was obtained for 2005. A significant association was found between outpatient quinolone use and the proportion of levofloxacin resistance (p=0.0013) and between the use of long-acting macrolides only and clarithromycin resistance (p=0.036). Conclusion In many countries the high rate of clarithromycin resistance no longer allows its empirical use in standard anti-H pylori regimens. The knowledge of outpatient antibiotic consumption may provide a simple tool to predict the susceptibility of H pylori to quinolones and to macrolides and to adapt the treatment strategies.

Epidemiology of Ciprofloxacin Resistance and Its Relationship to Extended-Spectrum β-Lactamase Production in Klebsiella pneumoniae Isolates Causing Bacteremia

A prospective study of Klebsiella pneumoniae bacteremia was performed in 12 hospitals in 7 countries. Of 452 episodes of bacteremia, 25 (5.5%) were caused by K. pneumoniae that was resistant in vitro to ciprofloxacin. Extended-spectrum beta-lactamase (ESBL) production was detected in 15 (60%) of 25 ciprofloxacin-resistant isolates, compared with 68 (16%) of 427 ciprofloxacin-susceptible strains (P=.0001). Multivariate analysis revealed that risk factors for ciprofloxacin resistance in K. pneumoniae included prior receipt of a quinolone (P=.0065) and an ESBL-producing strain (P=.012). In all, 18% of ESBL-producing isolates were also ciprofloxacin-resistant. Pulsed-field gel electrophoresis showed that 11 of the 15 ciprofloxacin-resistant ESBL-producing strains belonged to just 4 genotypes, suggesting that patient-to-patient transmission of such strains occurred. The close relationship between ESBL production and ciprofloxacin resistance is particularly worrisome because the first reported instance of plasmid-mediated ciprofloxacin resistance has been in an isolate of K. pneumoniae also possessing an ESBL.

Community-Acquired Klebsiella pneumoniae Bacteremia: Global Differences in Clinical Patterns

We initiated a worldwide collaborative study, including 455 episodes of bacteremia, to elucidate the clinical patterns of Klebsiella pneumoniae. Historically, community-acquired pneumonia has been consistently associated with K. pneumoniae. Only four cases of community-acquired bacteremic K. pneumoniae pneumonia were seen in the 2-year study period in the United States, Argentina, Europe, or Australia; none were in alcoholics. In contrast, 53 cases of bacteremic K. pneumoniae pneumonia were observed in South Africa and Taiwan, where an association with alcoholism persisted (p=0.007). Twenty-five cases of a distinctive syndrome consisting of K. pneumoniae bacteremia in conjunction with community-acquired liver abscess, meningitis, or endophthalmitis were observed. A distinctive form of K. pneumoniae infection, often causing liver abscess, was identified, almost exclusively in Taiwan.

Development of a Multiplex PCR for the Detection of asa1, gelE, cylA, esp, and hyl Genes in Enterococci and Survey for Virulence Determinants among European Hospital Isolates of Enterococcus faecium

ABSTRACT A multiplex PCR for the simultaneous detection of five virulence genes (asa1, gelE, cylA, esp, and hyl) in enterococci was developed. The presence of these genes was investigated in 153 clinical and 118 fecal Enterococcus faecium isolates from inpatients at an increased risk of developing infections (such as patients in intensive care units and hematology wards) from 13 hospitals in eight European countries. Of the 271 E. faecium isolates, 135 were vancomycin resistant E. faecium (VREF) isolates and 136 were vancomycin susceptible E. faecium (VSEF) isolates. Susceptibilities to ampicillin, gentamicin, streptomycin, vancomycin, teicoplanin, ramoplanin, quinupristin-dalfopristin, and linezolid were tested by the microdilution method. Overall, the prevalence of esp was significantly higher (P = 0.03) in clinical VREF isolates (92%) than in fecal VREF isolates (73%). In Italy, the prevalence of esp was significantly higher (P = 0.02) in VREF isolates (91%) than in VSEF isolates (68%), whereas in the United Kingdom, hyl was significantly more prevalent (P = 0.01) in VREF isolates (71%) than in VSEF isolates (29%). No significant differences were found for the other countries. Pulsed-field gel electrophoresis was used to check the clonality among the strains tested and showed the spread of two center-specific (esp-positive) VREF clones in Italy and one center-specific (hyl-positive) clone in the United Kingdom. These clones were resistant to ampicillin, gentamicin, and streptomycin. The multiplex PCR reported in this study is a convenient and rapid method for the simultaneous detection of the virulence genes asa1, gelE, cylA, esp, and hyl in enterococci. Molecular analysis showed the intrahospital spread of esp-positive VREF clones (in Italy) and hyl-positive VREF clones (in the United Kingdom); the role of hyl remains to be elucidated.

Antimicrobial Drug Use and Resistance in Europe

Routine surveillance data indicate a relation between use and resistance and support interventions designed to reduce antimicrobial consumption at a national level in Europe.

Characteristics and outcomes of public campaigns aimed at improving the use of antibiotics in outpatients in high-income countries

The worldwide increase in resistance to antimicrobial drugs has made reducing the unnecessary use of antibiotics a public health priority. There have been campaigns in many countries to educate the public about appropriate use of antibiotics in outpatients. By use of a comprehensive search strategy and structured interviews, we were able to identify and review the characteristics and outcomes of 22 campaigns done at a national or regional level in high-income countries between 1990 and 2007. The intensity of the campaigns varied widely, from simple internet to expensive mass-media campaigns. All but one campaign targeted the public and physicians simultaneously. Most campaigns that were formally evaluated seemed to reduce antibiotic use. The effect on resistance to antimicrobial drugs cannot be assessed accurately at present. Although the most effective interventions and potential adverse outcomes remain unclear, public campaigns can probably contribute to more careful use of antibiotics in outpatients, at least in high-prescribing countries.

Identification of a novel plasmid-mediated colistin-resistance gene, mcr-2, in Escherichia coli, Belgium, June 2016

We identified a novel plasmid-mediated colistin-resistance gene in porcine and bovine colistin-resistant Escherichia coli that did not contain mcr-1. The gene, termed mcr-2, a 1,617 bp phosphoethanolamine transferase harboured on an IncX4 plasmid, has 76.7% nucleotide identity to mcr-1. Prevalence of mcr-2 in porcine colistin-resistant E. coli (11/53) in Belgium was higher than that of mcr-1 (7/53). These data call for an immediate introduction of mcr-2 screening in ongoing molecular epidemiological surveillance of colistin-resistant Gram-negative pathogens.