Hiromitsu Furuya

Complete nucleotide sequence of the genomic RNA of Aconitum latent virus (genus Carlavirus) isolated from Delphinium sp.

Summary. We determined the complete nucleotide sequence of Aconitum latent virus (AcLV-D) isolated from Delphinium sp. The genomic RNA of AcLV-D is 8,657 nucleotides in length, excluding the poly (A) tail. Based on computer analysis, six open reading frames (ORFs) were identified as for other carlaviruses. Although each ORF differs from those of previously reported carlaviruses, the coat protein of AcLV and Potato virus M (PVM) shows a high level of identity. The results suggest that AcLV is a distinct carlavirus species but closely related to PVM.

Complete nucleotide sequence of the new potexvirus Alstroemeria virus X

Summary.A flexuous virus was isolated in Japan from an alstroemeria plant showing mosaic symptoms. The virus had a broad host range but had systemically latent infectivity in alstroemeria. The virus was assigned to the genus Potexvirus based on morphology and physical properties and on an analysis of the complete nucleotide sequence. The genomic RNA of the virus was 7,009 nucleotides in length, excluding the 3′-terminal poly (A) tail. It contained five open reading frames (ORFs), which was consistent with other members of the genus Potexvirus. Although nucleotide sequences of the ORFs differ from previously reported potexviruses, a phylogenetic analysis placed it phylogenetically close to Narcissus mosaic virus and Scallion virus X. Therefore, we propose that this virus should be designated as Alstroemeria virus X (AlsVX).

Suppression of Fusarium solani f. sp. phaseoli on bean by aluminum in acid soils

ABSTRACT The severity of bean root rot caused by Fusarium solani f. sp. phaseoli in vitro was studied with regard to exchangeable soil aluminum for 25 soil samples collected from northeastern Honshyu island, Japan. Of these, 24 were Andosols, typically acidic and of volcanic ash origin. Disease severity was assessed based on the number of lesions produced by the pathogen on a 6-cm section of bean stem buried and incubated for 8 days at 25 degrees C in artificially infested soil samples. The number of lesions differed considerably among soil samples. In all soils in which disease incidence was very low, macroconidial germination was strongly inhibited. The inhibition was observed in all soil samples with exchangeable aluminum contents of at least 0.4 meq/100 g of soil, although it is unclear if this concentration is the lowest limit for inhibition. When soil pH was 5.6 or lower, higher amounts of exchangeable aluminum were detected from soils in which the major clay mineralogy was chloritized 2:1 minerals, while no or limited amounts of aluminum were detected from soils in which the major clay mineralogy was allophane/imogolite. Macroconidial germination and disease incidence are thus closely related to clay mineralogy, which regulates the behavior of exchangeable aluminum.

Nucleotide sequence of the coat protein genes of alstroemeria mosaic virus and amazon lily mosaic virus, a tentative species of genus potyvirus.

Summary.The nucleotide sequences of the 3′ terminal region of the genomes of Alstroemeria mosaic virus (AlsMV) and the Amazon lily mosaic virus (ALiMV) have been determined. These sequences contain the complete coding region of the viral coat protein (CP) gene followed by a 3′-untranslated region (3′-UTR). AlsMV and ALiMV share 74.9% identity in the amino acid sequence of the CP, and 55.6% identity in the nucleotide sequence of the 3′-UTR. Phylogenetic analysis of these CP genes and 3′-UTRs in relation to those of 79 potyvirus species revealed that AlsMV and ALiMV should be assigned to the Potato virus Y (PVY) subgroup. AlsMV and ALiMV were concluded to have arisen independently within the PVY subgroup.

Nucleotide sequences of the coat protein gene of potyviruses infecting Ornithogalum thyrsoides

Summary. Species of three viral genera infecting Ornithogalum thyrsoides plants showing mosaic symptoms were identified using RT-PCR and degenerate universal primers for each viral genus. The DNA fragments obtained encoded the coat protein (CP) gene and were sequenced. The plants were found to be infected with one or other of three potyvirus species, one of them was Ornithogalum mosaic virus (OrMV). The other two viruses were previously unrecorded and were named Ornithogalum virus 2 (OV-2) and 3 (OV-3). Direct comparison and phylogenetic analysis with published OrMV isolates revealed that the CP of the three OrMV-like clones were more similar to Pterostylis virus Y (PtVY) than to OrMV. No carlavirus or potexvirus was isolated.

Modeling Infection of Spring Onion by Puccinia allii in Response to Temperature and Leaf Wetness

The influence of temperature and leaf wetness duration on infection of spring onion (Japanese bunching onion) leaves by Puccinia allii was examined in controlled-environment experiments. Leaves of potted spring onion plants (Allium fistulosum cv. Yoshikura) were inoculated with urediniospores and exposed to 6.5, 10, 15, 22, or 27 h of wetness at 5, 10, 15, 20, or 25 degrees C. The lesion that developed increased in density with increasing wetness duration. Relative infection was modeled as a function of both temperature and wetness duration using the modified version of Weibulls cumulative distribution function (R(2) = 0.9369). Infection occurred between 6.5 and 27 h of leaf wetness duration at 10, 15, 20, and 25 degrees C and between 10 and 27 h at 5 degrees C, and increased rapidly between 6.5 and 15 h of wetness at 10, 15, and 20 degrees C. At 25 degrees C, few uredinia developed regardless of the wetness duration. Parameter H, one of eight parameters used in the equation and which controls the asymmetry in the response curve, varied markedly according to the temperature, so that the model could be improved by representing H as a function of wetness duration (R(2) = 0.9501).

Deleterious effects of fungi isolated from paddy soils on seminal root of rice

Soil samples were collected from rice paddies at 22 locations in northeastern Honshu, Japan. In 20 of the samples, seedling growth of rice was improved by soil pasteurization (aerated steaming at 60°C for 30 min), although no typical disease symptoms were observed in the seedlings grown in the untreated soil samples. In most locations, rice seedlings grew better in a potting medium containing root material from plants grown in the pasteurized portion of a soil sample than in a medium with root material from plants grown in the unpasteurized portion of the same sample. The results suggest that microorganisms that restrained rice seedling growth may be common in the soils of rice paddies. Approximately 800 isolates were obtained from seedling roots grown in unpasteurized soils and grouped by cultural and microscopic morphologies. The deleterious effects of 79 isolates from 21 major groups, most of which were soil-dwelling taxa, were examined after direct inoculation of the seminal roots. Isolates of Curvularia sp., Cirrenalia sp., Eppicoccum nigrum, Fusarium graminearum, F. oxysporum, Gliocladium virens, Humicola sp., Penicillium sp., Rhizoctonia oryzae-sativae, Sclerotium hydrophilum, Trichoderma aureoviride, and T. harzianum inhibited root growth, suggesting that deleterious root-infecting fungi were more common in paddy soil than previously thought. These fungi may be involved in the restraint of rice seedling growth.

Inconspicuous restraint of rice seedling growth by root-infecting fungi in soil of a rice paddy field

Abstract Rice seedling growth, estimated by plant height and root development and discoloration, was better in pasteurized soil than in unpasteurized soil obtained from a flooded rice field. Rice seedlings also grew better in sterilized soil modified by adding roots harvested from the pasteurized soil than in soil modified by adding roots harvested from the unpasteurized soil. The results demonstrate that seedling growth in the rice field soil was inhibited by soil microorganisms, even though no typical symptoms such as seedling blight or damping-off appeared. Pythium aristosporum is suggested to be involved in the inhibition. Thus, it appears that inconspicuous restraint of rice seedling growth could occur in soils of rice paddy fields.

Characterization of a new potyvirus isolated from Chinese artichoke in Japan

Summary A filamentous virus was isolated in Japan from virus-infected Chinese artichoke showing mosaic symptoms. This virus was assigned to the genus Potyvirus, based on particle morphology and serological properties. The virus could be transmitted to several test plants but not to Perilla frutesence, the host plant of Perilla mottle virus. cDNA corresponding to the 3′-terminal 1675 nucleotides of the viral RNA, excluding the poly (A) tail, was cloned and sequenced. The amino acid sequence of the coat protein was different from those of 74 distinct potyviruses. Therefore, we propose that the new potyvirus should be designated as Chinese artichoke mosaic virus (ChAMV).

Incidence of viruses in Alstroemeria plants cultivated in Japan and characterization of Broad bean wilt virus-2, Cucumber mosaic virus and Youcai mosaic virus

Alstroemeria plants were surveyed for viruses in Japan from 2002 to 2004. Seventy-two Alstroemeria plants were collected from Aichi, Nagano, and Hokkaido prefectures and 54.2% were infected with some species of virus. The predominant virus was Alstroemeria mosaic virus, followed by Tomato spotted wilt virus, Youcai mosaic virus (YoMV), Cucumber mosaic virus (CMV), Alstroemeria virus X and Broad bean wilt virus-2 (BBWV-2). On the basis of nucleotide sequence of the coat protein genes, all four CMV isolates belong to subgroup IA. CMV isolates induced mosaic and/or necrosis on Alstroemeria. YoMV and BBWV-2 were newly identified by traits such as host range, particle morphology, and nucleotide sequence as viruses infecting Alstroemeria. A BBWV-2 isolate also induced mosaic symptoms on Alstroemeria seedlings.