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Featured researches published by Hiroshi Masuya.


Developmental Dynamics | 1997

Ascidian tyrosinase gene: its unique structure and expression in the developing brain.

Shigeru Sato; Hiroshi Masuya; Takaharu Numakunai; Noriyuki Satoh; Kazuho Ikeo; Takashi Gojobori; Koji Tamura; Hiroyuki Ide; Takuji Takeuchi; Hiroaki Yamamoto

Tadpole larvae of ascidians have two sensory pigment cells in the brain. One is the otolith cell that functions as a gravity receptor, the other pigment cell is part of a primitive photosensory structure termed the ocellus. These sensory cells, like vertebrate pigment cells, contain membrane‐bounded melanin granules and are considered to reflect a crucial position in the evolutionary process of this cell type. To investigate the molecular changes accompanying the evolution of pigment cells, we have isolated from Halocynthia roretzi a gene encoding tyrosinase, a key enzyme in melanin biosynthesis. The cDNA has an open reading frame (ORF) of 596 amino acids, which is 36–39% identical in amino acid sequence to vertebrate tyrosinases. In addition, the sequence analysis of both cDNA and genomic clones reveals an unusual organization of the tyrosinase gene, an extraordinary 3′ untranslated region of the transcripts with significant homology to the coding sequence, and a single short intron in the sequence encoding a cytoplasmic domain. Expression of the gene is detected first in two pigment precursor cells positioned in the neural plate of early neurulae, and later in two melanin‐containing pigment cells within the brain of late tailbud embryos. Its expression pattern correlates well with the appearance of tyrosinase enzyme activity in the developing brain. These results provide the first description of pigment cell differentiation at the molecular level in the ascidian embryo, and also will contribute to a better understanding of the evolution of chordate pigment cells. Dev. Dyn. 208:363–374, 1997.


Mammalian Genome | 1998

A new mutation Rim3 resembling Re(den) is mapped close to retinoic acid receptor alpha (Rara) gene on mouse chromosome 11.

Hajime Sato; Tsuyoshi Koide; Hiroshi Masuya; Shigeharu Wakana; Tomoko Sagai; Akihiro Umezawa; Sei-ichi Ishiguro; Makoto Tama; Toshihiko Shiroishi

A new mouse mutation, recombination-induced mutation 3 (Rim3), arose spontaneously in our mouse facility. This mutation exhibits corneal opacity as well as abnormal skin and hair development resembling rex denuded (Reden) and bareskin (Bsk). Large-scale linkage analysis with two kinds of intersubspecific backcrosses revealed that Rim3 is mapped to the distal portion of Chromosome (Chr) 11, in which Reden and Bsk have been located, and is very close to the retinoic acid receptor, alpha (Rara). The genes, keratin gene complex-1, acidic, gene 10, 12 (Krt1–10, 12), granulin (Grn), junctional plakoglobin (Jup) and Rara, all of which regulate growth and differentiation of epithelial cells, are genetically excluded as candidate genes for Rim3, but are clustered in the short segment on mouse Chr 11.


Bioinformatics | 2010

SDOP-DB

Nobuhiko Tanaka; Kazunori Waki; Hideki Kaneda; Tomohiro Suzuki; Ikuko Yamada; Tamio Furuse; Kimio Kobayashi; Hiromi Motegi; Hideaki Toki; Maki Inoue; Osamu Minowa; Tetsuo Noda; Keizo Takao; Tsuyoshi Miyakawa; Aki Takahashi; Tsuyoshi Koide; Shigeharu Wakana; Hiroshi Masuya

Summary: This article reports the development of SDOP-DB, which can provide definite, detailed and easy comparison of experimental protocols used in mouse phenotypic analyses among institutes or laboratories. Because SDOP-DB is fully compliant with international standards, it can act as a practical foundation for international sharing and integration of mouse phenotypic information. Availability: SDOP-DB (http://www.brc.riken.jp/lab/bpmp/SDOP/) Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics online.


Developmental Biology | 1997

Multigenic Control of the Localization of the Zone of Polarizing Activity in Limb Morphogenesis in the Mouse

Hiroshi Masuya; Tomoko Sagai; Kazuo Moriwaki; Toshihiko Shiroishi


SWAT4LS | 2017

LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences.

Atsuko Yamaguchi; Kouji Kozaki; Yasunori Yamamoto; Hiroshi Masuya; Norio Kobayashi


SWAT4LS | 2017

Metadata-driven Interdisciplinary Research Projects Using RIKEN MetaDatabase.

Norio Kobayashi; Satoshi Kume; Hiroshi Masuya


SWAT4LS | 2016

SPARQL Query Construction with Monitoring Service for Endpoints.

Atsuko Yamaguchi; Yasunori Yamamoto; Kouji Kozaki; Kai Lenz; Hiroshi Masuya; Norio Kobayashi


SWAT4LS | 2015

RIKEN Meta Database: A Life-science Metadata Database Based on the Semantic Web.

Norio Kobayashi; Kai Lenz; Hiroshi Masuya


SWAT4LS | 2013

PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web.

Norio Kobayashi; Yuko Makita; Manabu Ishii; Akihiro Matsushima; Yoshiki Mochizuki; Koji Doi; Koro Nishikata; David Gifford; Terue Takatsuki; Hiroshi Masuya; Tetsuro Toyoda


Archive | 2011

Investigation of the fundamental strategy for interoperability of description of biological measurements

Hiroshi Masuya; Georgios V. Gkoutos; Nobuhiko Tanaka; Kazunori Waki; Yoshihiro Okuda; Tatsuya Kushida; Norio Kobayashi; Koji Doi; Kouji Kozaki; Robert Hoehndorf; Shigeharu Wakana; Tetsuro Toyoda; Riichiro Mizoguchi

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Norio Kobayashi

RIKEN Brain Science Institute

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Shigeharu Wakana

National Institute of Genetics

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Nobuhiko Tanaka

National Institute of Genetics

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Tomoko Sagai

National Institute of Genetics

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Toshihiko Shiroishi

National Institute of Genetics

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Tsuyoshi Koide

National Institute of Genetics

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