Hiroya Asami

Microhydration of the guanine-guanine and guanine-cytosine base pairs.

Monohydration structures of the guanine-guanine and guanine-cytosine base pairs have been elucidated by IR-UV double resonance spectroscopy combined with ab initio calculations. The systems studied consist of the homodimer of 9-methylguanine and the heterodimer of 9-methylguanine and 1-methylcytosine in which the methyl group is introduced to mimic the presence of the sugar-phosphate backbone and to block specific tautomerization. The monohydrate of the homodimer is identified as that of the most stable symmetric structure formed by the keto tautomers of guanine, which demonstrates that the base pair structure is not influenced by the hydration. It is also shown that at least two structural isomers, one of which retains the Watson-Crick GC pair structure, contribute the monohydrated cluster of the heterodimer. Although stacked base pairs are suggested to be significantly stabilized by the addition of water, the result shows no clear indication for the presence of stacked monohydrates in either homodimer or heterodimer case.

Multiple Hydrogen-Bonding Interactions of Uric Acid/9-Methyluric Acid with Melamine Identified by Infrared Spectroscopy

Hydrogen-bonded complexes of uric acid/9-methyluric acid (UA/9MUA) with melamine (MEL) are prepared by the combined technique of laser desorption and supersonic-jet expansion, and their stable structures are investigated by infrared spectroscopy and theoretical calculations. It is shown that the 1:1 complex formed between UA and MEL is of nonplanar type, in which the two chromophore planes are significantly folded and thus allow for triple hydrogen-bonding interactions. An anomalously broad IR band is observed in the low-frequency range 2500-2800 cm(-1), which is taken as evidence for the formation of a strong hydrogen bond between one of the NH sites of UA and MEL. In the case of 9MUA, in which hydrogen bonding to the N9H site of UA is blocked by the methyl group, two planar pairs formed of 9MUA and MEL are found to coexist. The nature of the multiple hydrogen-bonding interactions in these complexes is discussed based on the natural bond orbital analysis and compared with those of the guanine-cytosine base pair. The results are expected to provide important information on the structural characterization of urinary stones developed in infants after ingesting MEL-contaminated formula.

Evaporation and Subsequent Adsorption of Alcohol Molecules at Aqueous Droplet Surface Observed by Cavity-Enhanced Raman Spectroscopy

Mass transfer toward and across liquid surfaces is important for the interpretation of various interfacial phenomena, such as evaporation, adsorption, and mass accommodation, which have been investigated by the use of various methods. These studies, however, have focused on only one of the mass-transfer processes occurring at the surface. We investigate the surface concentration of alcohol molecules at aqueous droplet surfaces on the several-millisecond time scale using cavity-enhanced droplet Raman spectroscopy. A decrease and subsequent increase of the alcohol concentration are observed in a set of measurements, which arise from an evaporation and subsequent adsorption of the alcohol molecules at the surface. This facilitates an understanding of the surface kinetics of molecules at the liquid surfaces.

Effective Strategy for Conformer-Selective Detection of Short-Lived Excited State Species: Application to the IR Spectroscopy of the N1H Keto Tautomer of Guanine

The ultrafast deactivation processes in the excited state of biomolecules, such as the most stable tautomers of guanine, forbid any state-of-the-art gas phase spectroscopic studies on these species with nanosecond lasers. This drawback can be overcome by grafting a chromophore having a long-lived excited state to the molecule of interest, allowing thus a mass-selective detection by nanosecond R2PI and therefore double resonance IR/UV conformer-selective spectroscopic studies. The principle is presently demonstrated on the keto form of a modified 9-methylguanine, for which the IR/UV double resonance spectrum in the C═O stretch region, reported for the first time, provides evidence for extensive vibrational couplings within the guanine moiety. Such a successful strategy opens up a route to mass-selective IR/UV spectroscopic investigations on molecules exhibiting natural chromophores having ultrashort-lived excited states, such as DNA bases, their complexes as well as peptides containing short-lived aromatic residues.