Hiroyuki Shimono

Food security and climate change: on the potential to adapt global crop production by active selection to rising atmospheric carbon dioxide

Agricultural production is under increasing pressure by global anthropogenic changes, including rising population, diversion of cereals to biofuels, increased protein demands and climatic extremes. Because of the immediate and dynamic nature of these changes, adaptation measures are urgently needed to ensure both the stability and continued increase of the global food supply. Although potential adaption options often consider regional or sectoral variations of existing risk management (e.g. earlier planting dates, choice of crop), there may be a global-centric strategy for increasing productivity. In spite of the recognition that atmospheric carbon dioxide (CO2) is an essential plant resource that has increased globally by approximately 25 per cent since 1959, efforts to increase the biological conversion of atmospheric CO2 to stimulate seed yield through crop selection is not generally recognized as an effective adaptation measure. In this review, we challenge that viewpoint through an assessment of existing studies on CO2 and intraspecific variability to illustrate the potential biological basis for differential plant response among crop lines and demonstrate that while technical hurdles remain, active selection and breeding for CO2 responsiveness among cereal varieties may provide one of the simplest and direct strategies for increasing global yields and maintaining food security with anthropogenic change.

Genotypic variation in rice yield enhancement by elevated CO2 relates to growth before heading, and not to maturity group

Maturity group (based on the number of days to maturity) is an important growth trait for determining crop productivity, but there has been no attempt to examine the effects of elevated [CO2] on yield enhancement of rice cultivars with different maturity groups. Since early-maturing cultivars generally show higher plant N concentration than late-maturing cultivars, it is hypothesized that [CO2]-induced yield enhancement might be larger for early-maturing cultivars than late-maturing cultivars. To test this hypothesis, the effects of elevated [CO2] on yield components, biomass, N uptake, and leaf photosynthesis of cultivars with different maturity groups were examined for 2 years using a free-air CO2 enrichment (FACE). Elevated [CO2] significantly increased grain yield and the magnitude significantly differed among the cultivars as detected by a significant [CO2]×cultivar interaction. Two cultivars (one with early and one with late maturity) responded more strongly to elevated [CO2] than those with intermediate maturity, resulting mainly from increases in spikelet density. Biomass and N uptake at the heading stage were closely correlated with grain yield and spikelet density over [CO2] and cultivars. Our 2 year field trial rejected the hypothesis that earlier cultivars would respond more to elevated [CO2] than later cultivars, but it is revealed that the magnitude of the growth enhancement before heading is a useful criterion for selecting rice cultivars capable of adapting to elevated [CO2].

Acclimation of nitrogen uptake capacity of rice to elevated atmospheric CO2 concentration

BACKGROUND AND AIMS Nitrogen (N) is a major factor affecting yield gain of crops under elevated atmospheric carbon dioxide concentrations [CO(2)]. It is well established that elevated [CO(2)] increases root mass, but there are inconsistent reports on the effects on N uptake capacity per root mass. In the present study, it was hypothesized that the responses of N uptake capacity would change with the duration of exposure to elevated [CO(2)]. METHODS The hypothesis was tested by measuring N uptake capacity in rice plants exposed to long-term and short-term [CO(2)] treatments at different growth stages in plants grown under non-limiting N conditions in hydroponic culture. Seasonal changes in photosynthesis rate and transpiration rate were also measured. KEY RESULTS In the long-term [CO(2)] study, leaf photosynthetic responses to intercellular CO(2) concentration (Ci) were not affected by elevated [CO(2)] before the heading stage, but the initial slope in this response was decreased by elevated [CO(2)] at the grain-filling stage. Nitrate and ammonium uptake capacities per root dry weight were not affected by elevated [CO(2)] at panicle initiation, but thereafter they were reduced by elevated [CO(2)] by 31-41 % at the full heading and mid-ripening growth stages. In the short-term study (24 h exposures), elevated [CO(2)] enhanced nitrate and ammonium uptake capacities at the early vegetative growth stage, but elevated [CO(2)] decreased the uptake capacities at the mid-reproductive stage. CONCLUSIONS This study showed that N uptake capacity was downregulated under long-term exposure to elevated [CO(2)] and its response to elevated [CO(2)] varied greatly with growth stage.

Diurnal and seasonal variations in stomatal conductance of rice at elevated atmospheric CO2 under fully open-air conditions

Understanding of leaf stomatal responses to the atmospheric CO(2) concentration, [CO(2)], is essential for accurate prediction of plant water use under future climates. However, limited information is available for the diurnal and seasonal changes in stomatal conductance (g(s)) under elevated [CO(2)]. We examined the factors responsible for variations in g(s) under elevated [CO(2)] with three rice cultivars grown in an open-field environment under flooded conditions during two growing seasons (a total of 2140 individual measurements). Conductance of all cultivars was generally higher in the morning and around noon than in the afternoon, and elevated [CO(2)] decreased g(s) by up to 64% over the 2 years (significantly on 26 out of 38 measurement days), with a mean g(s) decrease of 23%. We plotted the g(s) variations against three parameters from the Ball-Berry model and two revised versions of the model, and all parameters explained the g(s) variations well at each [CO(2)] in the morning and around noon (R(2) > 0.68), but could not explain these variations in the afternoon (R(2) < 0.33). The present results provide an important basis for modelling future water use in rice production.

Genome-wide association mapping for phenotypic plasticity in rice

Phenotypic plasticity of plants in response to environmental changes is important for adapting to changing climate. Less attention has been paid to exploring the advantages of phenotypic plasticity in resource-rich environments to enhance the productivity of agricultural crops. Here, we examined genetic variation for phenotypic plasticity in indica rice (Oryza sativa L.) across two diverse panels: (1) a Phenomics of Rice Adaptation and Yield (PRAY) population comprising 301 accessions; and (2) a Multi-parent Advanced Generation Inter-Cross (MAGIC) indica population comprising 151 accessions. Altered planting density was used as a proxy for elevated atmospheric CO2 response. Low planting density significantly increased panicle weight per plant compared with normal density, and the magnitude of the increase ranged from 1.10 to 2.78 times among accessions for the PRAY population and from 1.05 to 2.45 times for the MAGIC population. Genome-wide-association studies validate three Environmental Responsiveness (ER) candidate alleles (qER1-3) that were associated with relative response of panicle weight to low density. Two of these alleles were tested in 13 genotypes to clarify their biomass responses during vegetative growth under elevated CO2 in Japan. Our study provides evidence for polymorphisms that control rice phenotypic plasticity in environments that are rich in resources such as light and CO2 .

Cooling water before panicle initiation increases chilling-induced male sterility and disables chilling-induced expression of genes encoding OsFKBP65 and heat shock proteins in rice spikelets.

In rice (Oryza sativa L.), chilling-induced male sterility increased when plants experienced low water temperature (Tw , 18 °C for 14 d) before panicle initiation. The number of mature pollen grains after chilling at the booting stage (12 °C for 5 d) was only 45% of total pollen grains in low-Tw plants, whereas it was 71% in normal-Tw plants (Tw not controlled; approximately 23 °C under air temperature of 26 °C/21 °C, day/night). Microarray and quantitative PCR analyses showed that many stress-responsive genes (including OsFKBP65 and genes encoding the large heat shock protein OsHSP90.1, heat-stress transcription factors and many small heat shock proteins) were strongly up-regulated by chilling in normal-Tw spikelets, but were unaffected or even down-regulated by chilling in low-Tw spikelets. OsAPX2 and genes encoding some other antioxidant enzymes were also significantly down-regulated by low Tw in chilled spikelets. The levels of lipid peroxidation products (malondialdehyde equivalents) were significantly increased in low-Tw spikelets by chilling. Ascorbate peroxidase activity in chilled spikelets was significantly lower in low-Tw plants than in normal-Tw plants. Our data suggest that an OsFKBP65-related chilling response, which protects proteins from oxidative damage, is indispensable for chilling tolerance but is lost in low-Tw spikelets.

Interactive Effects of Elevated Atmospheric CO2 and Waterlogging on Vegetative Growth of Soybean (Glycine max (L.) Merr.)

Abstract Waterlogging is a major predicted agricultural problem for crop production in some areas under current climate change, but no studies are available on the interactive effects of waterlogging and elevated atmospheric CO2 concentration ([CO2]). We hypothesized that elevated [CO2] could alleviate the damage caused by waterlogging, and tested the hypothesis using vegetative growth of soybean (Glycine max) in 10 experiments (different sowing time and different soil type) conducted at Morioka and Tsukuba for three years. The 2-week-old plants grown under elevated and ambient [CO2] were exposed to waterlogging for 2 weeks. Total dry weight at the end of the treatment was higher under elevated [CO2] than under ambient [CO2], and it was significantly reduced by waterlogging under both levels of [CO2], without significant [CO2]×waterlogging interactions, at both locations. The negative effects of the waterlogging were greater in root dry weight than in top dry weight, and the root exudation per unit root dry weight was also reduced by waterlogging, without a [CO2] ×waterlogging interaction. Therefore, the hypothesis of a [CO2]×waterlogging interaction can be rejected, and provide an important basis for predicting future damage caused by waterlogging under elevated [CO2] conditions.

Planting geometry as a pre-screening technique for identifying CO2 responsive rice genotypes: a case study of panicle number

Identifying CO(2) responsive genotypes is a major target for enhancing crop productivity under future global elevated atmospheric CO(2) concentration ([CO(2)]). However, [CO(2)]-fumigation facilities are extremely expensive and are not easily accessible, and are limited in space for large-scale screening. Hence, reliable donors for initiating [CO(2)]-responsive breeding programs are not in place for crops, including rice. We propose a simple and novel phenotyping method for identifying [CO(2)]-responsive genotypes, and quantify the responsiveness to low planting density over 4-year trials across both temperate and tropical conditions. Panicle number per plant is the key determinant of grain yield and hence was the focus trait across all our trials. In temperate climate, a 3-season field screening using 127 diverse rice genotypes and employing two planting densities (normal and low density) was conducted. Two japonica genotypes were selected based on their higher responsiveness to low planting density as candidates for validating the proposed phenotyping protocol as a pre-screen for [CO(2)]-responsiveness. The approach using the two selected candidates and three standard genotypes was confirmed using a free-air CO(2) enrichment facility and temperature gradient chambers under elevated [CO(2)]. In tropical climate, we grew three rice cultivars, previously identified for their [CO(2)]-responsiveness, at two planting densities. The experiments provided confirmation that responsiveness to low planting density was correlated with that of [CO(2)]-responsiveness across both the temperate and tropical conditions. The planting density would be useful pre-screening method for testing large panels of diverse germplasm at low cost complemented by available CO(2) -control facilities for final validation of candidates from the pre-screens.

Effects of elevated CO2 concentration on growth and photosynthesis of Chinese yam under different temperature regimes

Abstract Chinese yam (‘yam’) was grown at different carbon dioxide concentrations ([CO2]), namely, ambient and elevated (ambient + 200 μmol mol−1), under low- and high-temperature regimes in summer and autumn, separately. For comparison, rice was also grown under these conditions. Mean air temperatures in the low- and high-temperatures were respectively 24.1 and 29.1 °C in summer experiment and 20.2 and 24.9 °C in autumn experiment. In summer experiment, yam vine length, leaf area, leaf dry weight (DW), and total DW were significantly higher under elevated [CO2] than ambient [CO2] in both temperature regimes. Additionally, number of leaves, vine DW, and root DW were significantly higher under elevated [CO2] than under ambient [CO2] in the low-temperature regime. In autumn experiment, tuber DW was significantly higher under elevated [CO2] than under ambient [CO2] in the high-temperature regime. These results demonstrate that yam shows positive growth responses to elevated [CO2]. Analysis of variance revealed that significant effect of [CO2] × air temperature interaction on yam total DW was not detected. Elevated-to-ambient [CO2] ratios of all growth parameters in summer experiment were higher in yam than in rice. The results suggest that the contribution of elevated [CO2] is higher in yam than in rice under summer. Yam net photosynthetic rate was significantly higher under elevated [CO2] than under ambient [CO2] in both temperature regimes in summer. Elevated [CO2] significantly affected on the rate in yam but not in rice in both experiments. These findings indicate that photosynthesis responds more readily to elevated [CO2] in yam than in rice.

Does Regional Temperature Difference before the Panicle Initiation Affect the Tolerance for Low Temperature-Induced Sterility in Rice?

Low temperature-induced sterility has been a major determinant for rice production in cool climates (Hayase et al., 1969; Satake, 1976; Shimono et al., 2007a; 2007b; 2007c). In the northern parts of Japan, one of the coolest rice growing areas in the world, yield loss caused by cool spell has been frequently observed at five-year intervals (Kanno, 2004). In 1993 of a severe cool year, for example, rice yield was seriously decreased to a half that of normal year in Tohoku region, mainly due to sterility. Sensit ive organ for steri l i ty induced by low temperature is known to be the developing anther and pollen (Hayase et al., 1969; Satake, 1976). The sensitive stage is the reproductive growth period from the panicle initiation to flowering; the sensitivity is very high at the booting stage (young microspore stage) and becomes lower at the stage away from the booting stage (Hayase et al., 1969; Satake, 1976). A low temperature before the panicle initiation alone does not induce sterility. Based on this understanding, previous studies have analyzed variations in sterility observed in cool summer years only from the temperatures after the panicle initiation until flowering, but they could not fully explain the variations in sterility (Uchijima, 1976; Shimono et al., 2005; Shimono et al., 2007a; 2007b; Kanda et al., 2007). Recently, Shimono et al. (2007c) found that a low temperature especially low irrigation water temperature before the panicle initiation weakened the tolerance for sterility from a 2-yr pot study. Their finding suggests that temperature before the panicle initiation can affect variations in sterility in cool summer years through influencing the tolerance. To test this hypothesis, we grew rice under two different field conditions before the panicle initiation and evaluated their tolerance for the sterility. Materials and Methods