Holger K. Schulz

Can hair traps sample wild boar (Sus scrofa) randomly for the purpose of non-invasive population estimation?

Reliable estimation of population size remains a major challenge in wildlife ecology and management. Lately, genotyping of non-invasively obtained tissue samples integrated in a modified capture–recapture approach provides new perspectives. Faeces, moulted feathers, or hairs can be easily sampled in the field. However, an important assumption is homogeneity of sampling across the population. In this pilot study, we tested the suitability of baited barbed wire hair sampling stations (‘hair traps’) for homogeneous genetic sampling for population estimation. A video system based on a new network internet protocol was used to observe the behaviour of wild boar visiting baited hair traps for gaining information about potential heterogeneities in the individual sampling probability. Within 92 monitoring nights at two sampling stations, 216 wild boar visits were recorded and 142 hair samples containing 2,124 single hairs were collected. Video analysis revealed distinct differences in the behaviour of wild boar with respect to the sampling station which are most likely to result in heterogeneous individual sampling probabilities. Adult and subadult animals differed in their behaviour dependent on their group status. This result indicates that hair sampling with baited hair traps is not suitable for representative non-invasive sampling of free ranging wild boar populations.

Two distinct evolutionary lineages of the Astacus leptodactylus species-complex (Decapoda : Astacidae) inferred by phylogenetic analyses

Abstract. Narrow-clawed crayfish (Astacus leptodactylus Eschscholtz, 1823 species-complex) is one of five European freshwater crayfish species. Even though widely distributed, it hasn’t been frequently studied and its taxonomy and systematics are unresolved. The results of a recent comparative morphometric character study revealed that morphometry of Asian and European populations differ significantly. In this research, for the first time, mitochondrial molecular markers (16S rRNA and COI) were used with the aim of elucidating the phylogenetic relationship between European and Asian populations of the narrow-clawed crayfish. Analyses included crayfish from Croatia, Bulgaria, Armenia, Russia, Poland and Turkey, and three different optimality criteria were applied. Phylogenetic relationships were reconstructed using the COI dataset, as well as the concatenated one (COI + 16S rRNA). For both datasets, congruent topologies were obtained and trees were characterised by the existence of two well supported phylogroups, one that included European populations, and the other Asian. Results indicate the presence of distinct evolutionary lineages within the A. leptodactylus species-complex, and corroborate previous results obtained using morphometric analyses.

Determination of the minimum number of microsatellite markers for individual genotyping in wild boar (Sus scrofa) using a test with close relatives

In the context of developing a noninvasive, practicable method for population size estimation in wild boar, we present a stepwise procedure to reduce the number of required microsatellite markers for individual genotyping. Step1: an initial marker set of 12 microsatellite loci was tested for species specificity with nontarget DNA and resulted in an exclusion of two markers. Step 2: a variability test regarding heterozygosity and deviations from Hardy–Weinberg equilibrium led to the rejection of two further markers. Step 3: the remaining eight markers were tested for transferability across populations with three separate wild boar sample sets. Step 4: on the basis of probability of identity values, a reduction from eight to five markers was possible. Step 5: a novel test using tissue samples from female wild boars and their embryos provided evidence that four variable microsatellite markers and one sex marker are sufficient for individual identification of close relatives. Step 6: feces samples were finally used to estimate PCR (PS) and genotyping success (GS). In conclusion, we recommend a specific four-marker combination with both PS and GS >50% for a reliable individual identification in noninvasive population size estimation of wild boar.

Evaluation of Fecal Storage and DNA Extraction Methods in Wild Boar (Sus scrofa

The wild boar (Sus scrofa) is one of the most common and widely distributed ungulates in Europe. Population sizes have been growing rapidly in recent years, leading to agricultural damage and farmer compensation costs (Toigo et al. 2008). Furthermore, wild boars play an important role in the transmission of diseases (Fickel and Hohmann 2005). Reliable information on absolute population sizes is of crucial importance for effective wildlife management; however, conventional methods based on hunting harvests, direct sightings, or fecal drop counts yield only relative estimates or predictions about population trends. A useful alternative, with great potential as a feasible census method, may be noninvasive genetic sampling without the need of individual capture (Sloane et al. 2000; Fickel and Hohmann 2005). Feces as a DNA source are attractive because of easy sampling and the possibility for an almost equal capture probability (Wehausen et al. 2004). Fecal genotyping, however, has some pitfalls, including low amplification and genotyping