Humma Shahid
University of Cambridge
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Featured researches published by Humma Shahid.
British Journal of Ophthalmology | 2006
Jane C. Khan; D A Thurlby; Humma Shahid; David G. Clayton; John R.W. Yates; M Bradley; Anthony T. Moore; Ac Bird
Background/aims: There is evidence that smoking is a risk factor for age related macular degeneration (AMD). However, not all studies have demonstrated this association and several key questions about the role of smoking in AMD have still to be determined. The aim of this study was to further investigate this relation for both choroidal neovascularisation (CNV) and geographic atrophy (GA). Methods: To investigate the relation between smoking and the risk of developing age related macular degeneration (AMD) in white people, 435 cases with end stage AMD were compared with 280 controls. All subjects had graded stereoscopic colour fundus photography and AMD was defined as the presence of GA or CNV. Smoking history was assessed using multiple parameters in a detailed questionnaire. Results: Comparison of current and former smokers with non-smokers was consistent with smoking being a risk factor for AMD but did not reach statistical significance. There was a strong association between AMD and pack years of cigarette smoking (p = 0.002), the odds ratio increasing with the amount smoked; for subjects with more than 40 pack years of smoking the odds ratio was 2.75 (95% CI 1.22 to 6.20) compared with non-smokers. Both types of AMD showed a similar relation; smoking more than 40 pack years of cigarettes was associated with an odds ratio of 3.43 (95% CI 1.28 to 9.20) for GA and 2.49 (95% CI 1.06 to 5.82) for CNV. Stopping smoking was associated with reduced odds of AMD and the risk in those who had not smoked for over 20 years was comparable to non-smokers. The risk profile was similar for males and females. Passive smoking exposure was associated with an increased risk of AMD (OR 1.87; 95% CI 1.03 to 3.40) in non-smokers. Conclusions: The authors have demonstrated a strong association between the risk of both GA and CNV and pack years of cigarette smoking. This provides support for a causal relation between smoking and AMD. They also show an increased risk for AMD in non-smokers exposed to passive smoking. Stopping smoking appears to reduce the risk of developing AMD.
Nature Genetics | 2013
Xiaowei Zhan; David E. Larson; Chaolong Wang; Daniel C. Koboldt; Yuri V. Sergeev; Robert S. Fulton; Lucinda Fulton; Catrina C. Fronick; Kari Branham; Jennifer L. Bragg-Gresham; Goo Jun; Youna Hu; Hyun Min Kang; Dajiang J. Liu; Mohammad Othman; Matthew Brooks; Rinki Ratnapriya; Alexis Boleda; Felix Grassmann; Claudia N. von Strachwitz; Lana M. Olson; Gabriëlle H.S. Buitendijk; Albert Hofman; Cornelia M. van Duijn; Valentina Cipriani; Anthony T. Moore; Humma Shahid; Yingda Jiang; Yvette P. Conley; Denise J. Morgan
Macular degeneration is a common cause of blindness in the elderly. To identify rare coding variants associated with a large increase in risk of age-related macular degeneration (AMD), we sequenced 2,335 cases and 789 controls in 10 candidate loci (57 genes). To increase power, we augmented our control set with ancestry-matched exome-sequenced controls. An analysis of coding variation in 2,268 AMD cases and 2,268 ancestry-matched controls identified 2 large-effect rare variants: previously described p.Arg1210Cys encoded in the CFH gene (case frequency (fcase) = 0.51%; control frequency (fcontrol) = 0.02%; odds ratio (OR) = 23.11) and newly identified p.Lys155Gln encoded in the C3 gene (fcase = 1.06%; fcontrol = 0.39%; OR = 2.68). The variants suggest decreased inhibition of C3 by complement factor H, resulting in increased activation of the alternative complement pathway, as a key component of disease biology.
British Journal of Ophthalmology | 2006
Jane C. Khan; Humma Shahid; D A Thurlby; M Bradley; David G. Clayton; Anthony T. Moore; Ac Bird; John R.W. Yates
Background/aim: It has been suggested that sun exposure may be a risk factor for age related macular degeneration (AMD) and that skin sensitivity to sunlight and iris colour could be confounding factors. The aim was to investigate this further in the white population. Methods: 446 cases with end stage AMD were compared with 283 spouse controls. Data on sun exposure, places of residence, iris colour, subjective assessment of change in iris colour, hair colour at age 20, and skin sensitivity were obtained using a questionnaire. Iris colour was graded clinically by comparison with standard photographs. AMD was graded using stereoscopic colour fundus photographs as well as clinical examination and was defined as the presence of geographic atrophy or choroidal neovascularisation. All variables were included in a multiple logistic regression model including age, sex, and smoking. Results: There was no association between AMD and sun exposure or related factors except for the suggestion of an association between sunburn prone skin type and geographic atrophy which reached borderline significance. Conclusions: No significant association between AMD and sun exposure, iris colour, change in iris colour, or hair colour was demonstrated.
Human Molecular Genetics | 2012
Valentina Cipriani; Hin-Tak Leung; Vincent Plagnol; Catey Bunce; Jane C. Khan; Humma Shahid; Anthony T. Moore; Simon P. Harding; Paul N. Bishop; Caroline Hayward; Susan Campbell; Ana Maria Armbrecht; Baljean Dhillon; Ian J. Deary; Harry Campbell; Malcolm G. Dunlop; Anna F. Dominiczak; Samantha Mann; Sharon Jenkins; Andrew R. Webster; Alan C. Bird; Mark Lathrop; Diana Zelenika; Eric H. Souied; José-Alain Sahel; Thierry Léveillard; French Amd Investigators; Angela J. Cree; Jane Gibson; Sarah Ennis
Age-related macular degeneration (AMD) is a leading cause of visual loss in Western populations. Susceptibility is influenced by age, environmental and genetic factors. Known genetic risk loci do not account for all the heritability. We therefore carried out a genome-wide association study of AMD in the UK population with 893 cases of advanced AMD and 2199 controls. This showed an association with the well-established AMD risk loci ARMS2 (age-related maculopathy susceptibility 2)-HTRA1 (HtrA serine peptidase 1) (P =2.7 × 10(-72)), CFH (complement factor H) (P =2.3 × 10(-47)), C2 (complement component 2)-CFB (complement factor B) (P =5.2 × 10(-9)), C3 (complement component 3) (P =2.2 × 10(-3)) and CFI (P =3.6 × 10(-3)) and with more recently reported risk loci at VEGFA (P =1.2 × 10(-3)) and LIPC (hepatic lipase) (P =0.04). Using a replication sample of 1411 advanced AMD cases and 1431 examined controls, we confirmed a novel association between AMD and single-nucleotide polymorphisms on chromosome 6p21.3 at TNXB (tenascin XB)-FKBPL (FK506 binding protein like) [rs12153855/rs9391734; discovery P =4.3 × 10(-7), replication P =3.0 × 10(-4), combined P =1.3 × 10(-9), odds ratio (OR) = 1.4, 95% confidence interval (CI) = 1.3-1.6] and the neighbouring gene NOTCH4 (Notch 4) (rs2071277; discovery P =3.2 × 10(-8), replication P =3.8 × 10(-5), combined P =2.0 × 10(-11), OR = 1.3, 95% CI = 1.2-1.4). These associations remained significant in conditional analyses which included the adjacent C2-CFB locus. TNXB, FKBPL and NOTCH4 are all plausible AMD susceptibility genes, but further research will be needed to identify the causal variants and determine whether any of these genes are involved in the pathogenesis of AMD.
Ophthalmic Epidemiology | 2008
Jane C. Khan; Humma Shahid; Deborah A. Thurlby; John R.W. Yates; Anthony T. Moore
Introduction: The term Charles Bonnet syndrome (CBS) is used to describe visual hallucinations resulting from ocular pathology. As part of a larger case-control study we assessed factors which may predispose to this phenomenon in Age-related macular degeneration (AMD). Methods: Three-hundred and sixty cases of late AMD underwent a detailed questionnaire about visual symptoms experienced. Potential ocular and environmental risk factors were compared in two groups; those experiencing symptoms of CBS (n = 97) and those not experiencing CBS symptoms (n = 263). Results: Twenty-seven percent experienced CBS. Poor visual acuity was the only factor associated with the development of these images in AMD with an odds ratio of 3.50 (95% CI 1.64–7.48, p = 0.001) for those with best binocular visual acuity worse than 6/36. In those who experienced CBS, the images tended to be straight ahead (84.5%), colored (72.2%), have moving parts (62.9%), and occur on average once per day (34%). The most common visual image was of people (19.6%) followed by geometric patterns (15.8%). The majority (71.1%) felt the experience to be neither pleasant nor unpleasant. In 41% images were present throughout the course of their disease. There was no association between visual acuity and complexity of images. Conclusion: The prevalence of CBS in late AMD is high, the main risk factor being poor better eye visual acuity. The most commonly experienced hallucinations were of people. Although most patients were unperturbed by the images, reassurance of their benign nature was welcomed. Practitioners should be aware that resolution of symptoms over time does not always occur.
Human Molecular Genetics | 2013
Morad Ansari; Paul McKeigue; Christine Skerka; Caroline Hayward; Igor Rudan; Veronique Vitart; Ozren Polasek; Ana-Maria Armbrecht; John R.W. Yates; Zoran Vatavuk; Goran Benčić; Ivana Kolcic; Ben A. Oostra; Cornelia M. van Duijn; Susan Campbell; Chloe M. Stanton; Jennifer E. Huffman; Xinhua Shu; Jane C. Khan; Humma Shahid; Simon P. Harding; Paul N. Bishop; Ian J. Deary; Anthony T. Moore; Baljean Dhillon; Pavao Rudan; Peter F. Zipfel; Robert B. Sim; Nicholas D. Hastie; Harry Campbell
It is a longstanding puzzle why non-coding variants in the complement factor H (CFH) gene are more strongly associated with age-related macular degeneration (AMD) than functional coding variants that directly influence the alternative complement pathway. The situation is complicated by tight genetic associations across the region, including the adjacent CFH-related genes CFHR3 and CFHR1, which may themselves influence the alternative complement pathway and are contained within a common deletion (CNP147) which is associated with protection against AMD. It is unclear whether this association is mediated through a protective effect of low plasma CFHR1 concentrations, high plasma CFH or both. We examined the triangular relationships of CFH/CFHR3/CFHR1 genotype, plasma CFH or CFHR1 concentrations and AMD susceptibility in combined case–control (1256 cases, 1020 controls) and cross-sectional population (n = 1004) studies and carried out genome-wide association studies of plasma CFH and CFHR1 concentrations. A non-coding CFH SNP (rs6677604) and the CNP147 deletion were strongly correlated both with each other and with plasma CFH and CFHR1 concentrations. The plasma CFH-raising rs6677604 allele and raised plasma CFH concentration were each associated with AMD protection. In contrast, the protective association of the CNP147 deletion with AMD was not mediated by low plasma CFHR1, since AMD-free controls showed increased plasma CFHR1 compared with cases, but it may be mediated by the association of CNP147 with raised plasma CFH concentration. The results are most consistent with a regulatory locus within a 32 kb region of the CFH gene, with a major effect on plasma CFH concentration and AMD susceptibility.
British Journal of Ophthalmology | 2012
Humma Shahid; Jane C. Khan; Valentina Cipriani; Tiina Sepp; Baljinder K. Matharu; Catey Bunce; Simon P. Harding; David G. Clayton; Anthony T. Moore; John R.W. Yates
Background Family history is considered a risk factor for age-related macular degeneration (AMD). With the advent of effective therapy for the disease, the importance of family history merits further investigation. This study quantifies the risk associated with family history, first, by a case–control study of reported family history and, second, by examining the siblings of AMD cases. Methods The authors recruited cases with advanced AMD, spouses and siblings. All subjects were carefully phenotyped. Clinical findings in the siblings were compared with spouses. Information about family history was collected. The ORs for reported family history of AMD were calculated. Analyses were adjusted for age, smoking and genotype. Results 495 AMD cases, 259 spouses and 171 siblings were recruited. The OR for AMD was 27.8 (CI 3.8 to 203.0; p=0.001) with a reported family history of an affected parent and 12.0 (CI 3.7 to 38.6; p<0.0001) with a history of an affected sibling. ORs adjusted for age and smoking were higher. Examination of siblings confirmed their increased risk with 23% affected by AMD and an OR of 10.8 (4.5 to 25.8; p<0.0001). Adjusting for age increased the OR to 16.1 (6.2 to 41.8). Conclusion The risk of AMD is greatly increased by having an affected first-degree relative. Those at risk need to be made aware of this and AMD patients should advise siblings and children to seek prompt ophthalmological advice if they develop visual symptoms of distortion or reduced vision.
European Journal of Human Genetics | 2012
Valentina Cipriani; Baljinder K. Matharu; Jane C. Khan; Humma Shahid; Caroline Hayward; Alan F. Wright; Ana Maria Armbrecht; Baljean Dhillon; Simon P. Harding; Paul N. Bishop; Catey Bunce; David G. Clayton; Anthony T. Moore; John R.W. Yates
In 2008, an association between age-related macular degeneration (AMD) and single nucleotide polymorphisms (SNPs) on chromosome 4q25 was reported in this journal by Fagerness et al1 studying a large US-based sample of around 1200 cases with advanced AMD and 800 controls. The association signal extended over a region of about 175 kb, the most associated variant (P<10−7) being the SNP rs10033900 near the complement factor I (CFI) gene. Two replication studies2, 3 published also in this journal provided some additional support for an AMD susceptibility locus in this region. In the course of candidate gene studies of AMD, we had previously investigated SNPs spanning CFI including rs10033900 in a UK case–control sample, which shows the expected associations with the well-established AMD-susceptibility loci CFH, ARMS2, CFB and C3. No evidence of association with the CFI variants was observed. Following publication of the reports cited above we have typed rs10033900 in additional cases and controls in two independent samples from England and Scotland to investigate this further.
Immunobiology | 2012
Valentina Cipriani; Baljinder K. Matharu; Jane C. Khan; Humma Shahid; Chloe M. Stanton; Caroline Hayward; Alan F. Wright; Catey Bunce; David G. Clayton; Anthony T. Moore; John R.W. Yates
Objectives Age-related macular degeneration (AMD) is the commonest cause of blindness in Western populations. Risk is influenced by age, genetic and environmental factors. Complement activation appears to be important in the pathogenesis and associations have been found between AMD and genetic variations in complement regulators such as complement factor H. We therefore investigated other complement regulators for association with AMD. Methods We carried out a case–control study to test for association between AMD and single nucleotide polymorphisms (SNPs) spanning the genes encoding complement factor P (CFP, properdin), CD46 (membrane cofactor protein, MCP), CD55 (decay accelerating factor, DAF) and CD59 (protectin). All cases and controls were examined by an ophthalmologist and had independent grading of fundus photographs to confirm their disease status. Results 20 SNPs were genotyped in 446 cases and 262 controls. For two SNPs with p-values approaching significance additional subjects were genotyped to increase the numbers to 622 cases and 359 controls. There was no evidence of association between AMD and any of the SNPs typed in CFP, CD46, CD55 or CD59. Conclusions In a case–control sample that has shown the well established associations between AMD and variants in CFH, CFB and C3 there was absence of association with SNPs in CFP, CD46, CD55 and CD59. This suggests that these are not important susceptibility genes for AMD.
Clinical and Experimental Ophthalmology | 2015
Jonathan Keenan; Humma Shahid; Rupert Bourne; Andrew White; Keith R. Martin
With a higher life expectancy, there is an increased demand for hospital glaucoma services in the United Kingdom.