Hyunwoo Noh

50 nm DNA Nanoarrays Generated from Uniform Oligonucleotide Films

One of the most challenging but potentially rewarding goals in nanoscience is the ability to direct the assembly of nanoscale materials into functional architectures with high yields, minimal steps, and inexpensive procedures. Despite their unique physical properties, the inherent difficulties of engineering wafer-level arrays of useful devices from nanoscale materials in a cost-effective manner have provided serious roadblocks toward technological impact. To address nanoscale features while still maintaining low fabrication costs, we demonstrate here an inexpensive printing method that enables repeated patterning of large-area arrays of nanoscale materials. DNA strands were patterned over 4 mm areas with 50 nm resolution by a soft-lithographic subtraction printing process, and DNA hybridization was used to direct the assembly of sub-20 nm materials to create highly ordered two-dimensional nanoparticle arrays. The entire printing and assembly process was accomplished in as few as three fabrication steps and required only a single lithographically templated silicon master that could be used repeatedly. The low-cost procedures developed to generate nanoscale DNA patterns can be easily extended toward roll-to-roll assembly of nanoscale materials with sub-50 nm resolution and fidelity.

Switchable nanodumbbell probes for analyte detection.

Nanodumbbell gold nanoparticle (AuNP) dimers connected by DNA show significant change in interparticle distance in the presence of a specific analyte, ATP. The nanodumbbell begins in an extended state, but after the addition of the analyte, the DNA connecting the AuNPs forms a stable hairpin, which causes a large decrease in the interparticle distance.

Site-Specific Patterning of Highly Ordered Nanocrystal Superlattices through Biomolecular Surface Confinement

With the increasing demand in recent years for high-performance devices for both energy and health applications, there has been extensive research to direct the assembly of nanoparticles into meso- or macroscale single two- and three-dimensional crystals of arbitrary configuration or orientation. Inorganic nanoparticle arrays can have intriguing physical properties that differ from either individual nanoparticles or bulk materials. For most device applications, it is necessary to fabricate two-dimensional nanoparticle superlattices at programmed sites on a surface. However, it has remained a significant challenge to generate patterned arrays with long-range positional order because most highly ordered close-packed nanocrystal arrays are typically obtained by kinetically driven evaporation processes. In this report, we demonstrate a method to generate patterned nanocrystal superlattices by confining nanoparticles to geometrically defined 2-D DNA sites on a surface and using associative biomolecular interparticle interactions to produce thermodynamically stable arrays of hexagonally packed nanocrystals with significant long-range order observed over 1-2 μm. We also demonstrate the role of chemical and geometrical confinement on particle packing and obtaining long-range order. Finally, we also demonstrate that the formation of DNA-mediated nanocrystal superlattices requires both interparticle DNA hybridization and solvent-less thermal annealing.

High-Yielding and Photolabile Approaches to the Covalent Attachment of Biomolecules to Surfaces via Hydrazone Chemistry

The development of strategies to couple biomolecules covalently to surfaces is necessary for constructing sensing arrays for biological and biomedical applications. One attractive conjugation reaction is hydrazone formation--the reaction of a hydrazine with an aldehyde or ketone--as both hydrazines and aldehydes/ketones are largely bioorthogonal, which makes this particular reaction suitable for conjugating biomolecules to a variety of substrates. We show that the mild reaction conditions afforded by hydrazone conjugation enable the conjugation of DNA and proteins to the substrate surface in significantly higher yields than can be achieved with traditional bioconjugation techniques, such as maleimide chemistry. Next, we designed and synthesized a photocaged aryl ketone that can be conjugated to a surface and photochemically activated to provide a suitable partner for subsequent hydrazone formation between the surface-anchored ketone and DNA- or protein-hydrazines. Finally, we exploit the latent functionality of the photocaged ketone and pattern multiple biomolecules on the same substrate, effectively demonstrating a strategy for designing substrates with well-defined domains of different biomolecules. We expect that this approach can be extended to the production of multiplexed assays by using an appropriate mask with sequential photoexposure and biomolecule conjugation steps.

Direct conjugation of DNA to quantum dots for scalable assembly of photoactive thin films

For many thin film applications, it is critical to not only control the organization of the materials on surfaces but to also use scalable processes that are time and material efficient. This is especially the case when using nanomaterials, including metal or semiconductor nanocrystals, as building blocks from which to engineer devices. In this work, we demonstrate a method to directly conjugate DNA to cadmium based quantum dots (QD) to create thin film arrays on surfaces for potential optoelectronic devices. These DNA-conjugated QDs showed uniform coatings, were oxidation-stable, and remained stable in high ionic strength environments. In previously published work, we discovered that high salt, in particular magnesium, is critical for fabricating nanoparticle assemblies on substrates through DNA interactions. The QD thin films were produced by means of interparticle DNA hybridization in a few steps with no loss of material and with good control over film thickness and roughness. By directly conjugating the DNA to the QDs, it also became possible to study DNAs role in mediating charge transport in the QD films. For this, DNA-conjugated CdTe nanocrystals were assembled onto TiO2 films to fabricate photovoltaic prototypes. Current–Voltage measurements from the DNA–QD devices showed the promise of using DNA not only as an assembler but also as mediator of charge separation and transport.

Charge transport through exciton shelves in cadmium chalcogenide quantum dot-DNA nano-bioelectronic thin films

Quantum dot (QD), or semiconductor nanocrystal, thin films are being explored for making solution-processable devices due to their size- and shape-tunable bandgap and discrete higher energy electronic states. While DNA has been extensively used for the self-assembly of nanocrystals, it has not been investigated for the simultaneous conduction of multiple energy charges or excitons via exciton shelves (ES) formed in QD-DNA nano-bioelectronic thin films. Here, we present studies on charge conduction through exciton shelves, which are formed via chemically coupled QDs and DNA, between electronic states of the QDs and the HOMO-LUMO levels in the complementary DNA nucleobases. While several challenges need to be addressed in optimizing the formation of devices using QD-DNA thin films, a higher charge collection efficiency for hot-carriers and our detailed investigations of charge transport mechanism in these thin films highlight their potential for applications in nano-bioelectronic devices and biological transducers.