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Dive into the research topics where I. Demirkan is active.

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Featured researches published by I. Demirkan.


Veterinary Microbiology | 2008

Three unique groups of spirochetes isolated from digital dermatitis lesions in UK cattle

Nicholas J. Evans; Jennifer M. Brown; I. Demirkan; R. D. Murray; W. Daan Vink; Roger Blowey; C. Anthony Hart; S. D. Carter

Bovine digital dermatitis (BDD) is a severe infectious cause of lameness which has spread through dairy cattle populations worldwide, causing serious welfare and agricultural problems. Spirochetes are the main organisms implicated and have previously proven difficult to isolate. This study aimed to isolate and characterise the range of spirochetes associated with BDD in the UK. Twenty-three spirochete isolates were obtained from 30 BDD lesions, which by 16S rRNA gene and flaB2 gene analysis clustered within the genus Treponema as three phylogroups; groups 1 (Treponema medium/Treponema vincentii-like), 2 (Treponema phagedenis-like) and 3 (Treponema denticola/Treponema putidum-like). The treponemes displayed large genotypic and phenotypic diversity between phylogroups and differed from named treponeme species. A previously isolated contagious ovine digital dermatitis spirochete was located within one of the three phylogroups, group 3, and could also be identified within this group on the basis of phenotype testing, suggesting BDD and contagious ovine digital dermatitis may share the same aetiological agent. A strain isolated from a bovine interdigital dermatitis lesion, could be identified as part of BDD isolate group 2, suggesting bovine interdigital dermatitis and BDD may have the same causative agent. Two common enzyme activities, C4 esterase and C8 esterase lipase, were identified in all BDD associated treponemes suggesting common metabolic pathways for sharing this novel niche or even common virulence traits. Further studies are required to determine whether the three groups of novel treponemes are representative of new treponeme taxa and to delineate how they interact with bovine tissues to cause disease.


Journal of Clinical Microbiology | 2009

Association of Unique, Isolated Treponemes with Bovine Digital Dermatitis Lesions

Nicholas J. Evans; Jennifer M. Brown; I. Demirkan; Prem Singh; Brian Getty; Dorina Timofte; W. Daan Vink; R. D. Murray; Roger Blowey; Richard J. Birtles; C. Anthony Hart; S. D. Carter

This study used a PCR-based approach targeting 16S rRNA gene fragments to determine the occurrence and association of the three bovine digital dermatitis (BDD) treponeme phylogroups within lesions found in cattle from the United Kingdom. Examination of 51 BDD lesions collected from infected cattle across the United Kingdom revealed that BDD treponeme group 1 (Treponema medium/Treponema vincentii-like), group 2 (Treponema phagedenis-like), and group 3 (Treponema putidum/Treponema denticola-like) were present in 96.1%, 98%, and 76.5% of BDD lesions, respectively. The three phylogroups were present together in 74.5% of lesions. The PCR assays enabled the isolation of further treponeme strains from previously mixed primary BDD lesion cultures. Here a representative from each of the three distinct treponeme phylogroups was isolated from a single BDD lesion for the first time. These data highlight the extent to which this disease is polytreponemal. Immunohistochemistry and electron microscopy were used to investigate lesional hoof tissues, resulting in treponemes being identified copiously in hair follicles and sebaceous glands, suggesting a potential route of exit and/or entry for these pathogens. This study gives further evidence for the importance of the three treponeme groups in BDD pathogenesis and reiterates the value of molecular genetic approaches for isolating and identifying fastidious anaerobes.


Veterinary Microbiology | 1998

The frequent detection of a treponeme in bovine digital dermatitis by immunocytochemistry and polymerase chain reaction

I. Demirkan; S. D. Carter; R. D. Murray; Roger Blowey; Martin J. Woodward

A study was carried out to determine whether spirochaetes are frequently associated with digital dermatitis in United Kingdom (UK) dairy cattle. Histopathological examination of lesions using a silver stain showed a large number of unidentified spirochaete-like organisms present in digital dermatitis hoof skin tissue in all examined biopsies. Immunocytochemical staining demonstrated that spirochaetes in skin lesions were identified by polyclonal antisera to Borrelia burgdorferi, Treponema denticola and Treponema vincentii (again all biopsies were positively stained), whereas monoclonal antibodies to B. burgdorferi and any Treponema pallidum did not stain any organisms in all biopsies. A PCR of 16S rRNA, previously shown to be specific for a new treponeme, was employed and produced positive results from 82.4% of digital dermatitis tissues. It is concluded that this spirochaete (or related spirochaetes), which is similar to human oral treponemes, is frequently associated with, and may be responsible for, pathological changes in digital dermatitis.


International Journal of Systematic and Evolutionary Microbiology | 2009

Treponema pedis sp. nov., a spirochaete isolated from bovine digital dermatitis lesions

Nicholas J. Evans; Jennifer M. Brown; I. Demirkan; R. D. Murray; Richard J. Birtles; C. A. Hart; S. D. Carter

Bovine digital dermatitis (BDD) is a debilitating infection that is being increasingly recognized in livestock worldwide. Several treponeme phylotypes have been identified in BDD lesions, although only a single BDD-associated treponeme taxon (Treponema brennaborense) has been proposed thus far. In a previous study, we observed that four BDD-associated spirochaete isolates formed a distinct phylogenetic cluster on the basis of 16S rRNA gene sequence analysis and shared less than 97 % sequence similarity with recognized treponeme species. Further characterization of these isolates on the basis of growth characteristics, flaB2 gene sequences, enzyme profiles and cell morphology confirmed that they formed a coherent taxonomic group displaying marked genotypic and phenotypic differences with respect to recognized treponeme species. The four novel isolates displayed a novel 3 : 6 : 3 flagellar pattern rather than the 2 : 4 : 2 pattern shown by their closest relatives and exhibited esterase C4, esterase lipase C8, trypsin and chymotrypsin enzyme activities. Therefore these four new isolates represent a novel species of the genus Treponema, for which the name Treponema pedis sp. nov. is proposed. The type strain is T3552B(T) (=DSM 18691(T)=NCTC 13403(T)).


Journal of Medical Microbiology | 2001

Isolation and characterisation of a novel spirochaete from severe virulent ovine foot rot.

I. Demirkan; S. D. Carter; Craig Winstanley; Kenneth D. Bruce; McNair Nm; Woodside M; C. A. Hart

A novel spirochaete was isolated from a case of severe virulent ovine foot rot (SVOFR) by immunomagnetic separation with beads coated with polyclonal anti-treponemal antisera and prolonged anaerobic broth culture. The as yet unnamed treponeme differs considerably from the only other spirochaete isolated from ovine foot rot as regards morphology, enzymic profile and 16S rDNA sequence. On the basis of 16S rDNA, it was most closely related to another unnamed spirochaete isolated from cases of bovine digital dermatitis in the USA, raising the possibility of cross-species transmission. Further information is required to establish this novel ovine spirochaete as the cause of SVOFR.


Journal of Applied Microbiology | 2006

Characterization of a spirochaete isolated from a case of bovine digital dermatitis

I. Demirkan; H.F. Williams; A. Dhawi; S. D. Carter; Craig Winstanley; Kenneth D. Bruce; C. A. Hart

Aims:  The aim of the study was to characterize a spirochaete isolated from the lesions of a cow with digital dermatitis (DD).


Veterinary Microbiology | 2009

In vitro susceptibility of bovine digital dermatitis associated spirochaetes to antimicrobial agents.

Nicholas J. Evans; Jennifer M. Brown; I. Demirkan; Richard J. Birtles; C. Anthony Hart; S. D. Carter

Bovine digital dermatitis (BDD) is an infectious lameness in cattle, which has a large global impact in terms of animal welfare and cost. The majority of evidence suggests that spirochaetes are the aetiological agent of this disease. The aim of this study was to identify the susceptibility of BDD associated spirochaetes to a range of antimicrobial agents with a view to potential usage in vivo to treat this widespread cattle disease. A microdilution method was adapted to determine the in vitro susceptibilities of 19 UK digital dermatitis spirochaetes (6 Treponema medium/Treponema vincentii-like, 8 Treponema phagedenis-like and 5 Treponema denticola/Treponema putidum-like) to eight relevant antimicrobials. The BDD spirochaetes exhibited the highest susceptibility to penicillin and erythromycin and this information may now be used to aid development of efficacious treatments. This study has also identified that BDD spirochaete T167 is spectinomycin resistant and that the likely biological basis is a point mutation in the 16S rRNA gene. Interestingly, nearly all Brachyspira isolate 16S rRNA gene sequences in Genbank have this substitution, suggesting it may be responsible for the characteristic spectinomycin resistance reported for the Brachyspira genus.


Veterinary Journal | 1999

Serological Evidence of Spirochaetal Infections Associated with Digital Dermatitis in Dairy Cattle

I. Demirkan; R.L Walker; R. D. Murray; Roger Blowey; S. D. Carter


Veterinary Journal | 2005

Bovine digital dermatitis and severe virulent ovine foot rot: a common spirochaetal pathogenesis.

A. Dhawi; C. A. Hart; I. Demirkan; I.H. Davies; S. D. Carter


Veterinary Record | 1999

Isolation and cultivation of a spirochaete from bovine digital dermatitis.

I. Demirkan; S. D. Carter; C. A. Hart; Martin J. Woodward

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S. D. Carter

University of Liverpool

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R. D. Murray

University of Liverpool

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Roger Blowey

University of Liverpool

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C. A. Hart

University of Liverpool

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W. Daan Vink

University of Liverpool

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A. Dhawi

University of Liverpool

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