Iain Mackie

The role of DNA barcodes in understanding and conservation of mammal diversity in southeast Asia.

Background Southeast Asia is recognized as a region of very high biodiversity, much of which is currently at risk due to habitat loss and other threats. However, many aspects of this diversity, even for relatively well-known groups such as mammals, are poorly known, limiting ability to develop conservation plans. This study examines the value of DNA barcodes, sequences of the mitochondrial COI gene, to enhance understanding of mammalian diversity in the region and hence to aid conservation planning. Methodology and Principal Findings DNA barcodes were obtained from nearly 1900 specimens representing 165 recognized species of bats. All morphologically or acoustically distinct species, based on classical taxonomy, could be discriminated with DNA barcodes except four closely allied species pairs. Many currently recognized species contained multiple barcode lineages, often with deep divergence suggesting unrecognized species. In addition, most widespread species showed substantial genetic differentiation across their distributions. Our results suggest that mammal species richness within the region may be underestimated by at least 50%, and there are higher levels of endemism and greater intra-specific population structure than previously recognized. Conclusions DNA barcodes can aid conservation and research by assisting field workers in identifying species, by helping taxonomists determine species groups needing more detailed analysis, and by facilitating the recognition of the appropriate units and scales for conservation planning.

European bat lyssavirus in Scottish bats.

Daubenton bats may roost infrequently in human dwellings, so risk for human contact is low.

The evolution of sensory divergence in the context of limited gene flow in the bumblebee bat

The sensory drive theory of speciation predicts that populations of the same species inhabiting different environments can differ in sensory traits, and that this sensory difference can ultimately drive speciation. However, even in the best-known examples of sensory ecology driven speciation, it is uncertain whether the variation in sensory traits is the cause or the consequence of a reduction in levels of gene flow. Here we show strong genetic differentiation, no gene flow and large echolocation differences between the allopatric Myanmar and Thai populations of the worlds smallest mammal, Craseonycteris thonglongyai, and suggest that geographic isolation most likely preceded sensory divergence. Within the geographically continuous Thai population, we show that geographic distance has a primary role in limiting gene flow rather than echolocation divergence. In line with sensory-driven speciation models, we suggest that in C. thonglongyai, limited gene flow creates the suitable conditions that favour the evolution of sensory divergence via local adaptation.

Molecular phylogenetics and historical biogeography of Rhinolophus bats.

The phylogenetic relationships within the horseshoe bats (genus Rhinolophus) are poorly resolved, particularly at deeper levels within the tree. We present a better-resolved phylogenetic hypothesis for 30 rhinolophid species based on parsimony and Bayesian analyses of the mitochondrial cytochrome b gene and three nuclear introns (TG, THY and PRKC1). Strong support was found for the existence of two geographic clades within the monophyletic Rhinolophidae: an African group and an Oriental assemblage. The relaxed Bayesian clock method indicated that the two rhinolophid clades diverged approximately 35 million years ago and results from Dispersal Vicariance (DIVA) analysis suggest that the horseshoe bats arose in Asia and subsequently dispersed into Europe and Africa.

Bat diversity in Vietnamese limestone karst areas and the implications of forest degradation

Limestone karst ecosystems in Southeast Asia and Vietnam are important reservoirs for biodiversity and are currently experiencing habitat loss and degradation due to land use changes and increasing pressure from extractive and tourism industries. Recent reviews indicate that their biodiversity is poorly known and raise doubts about the extent to which karst can maintain its biodiversity in the face of ongoing degradation. We investigated this issue by examining the effects of forest degradation on bat species diversity, composition and abundance. Using mist nets and harp traps, we sampled bat assemblages in karst forests of differing integrity for a total of 240 net nights and 180 harp trap nights, capturing 694 bats representing 36 species and five families. Our results confirm that primary forests in Vietnamese karst are exceptionally important for bat diversity, supporting substantial proportions of the national fauna. Disturbed and heavily degraded karst forests also appear capable of supporting relatively high numbers of bat species at low abundances, but their ability to do so in the longer term is in doubt and requires further research. Our findings of bats in relict forests on karst hillsides and ridgetops provide justification for their protection and raise the possibility that these may provide corridors for the movement of forest-dwelling bats within anthropogenic landscapes. Since the majority of Vietnamese karst landscapes remain unprotected however, the future of their biodiversity remains uncertain.

Spatial distribution of mitochondrial and microsatellite DNA variation in Daubenton's bat within Scotland

Daubentons bat (Myotis daubentonii) is a known reservoir for European bat lyssavirus type 2 (EBLV‐2). An appreciation of the potential for epidemiological spread and disease risk requires an understanding of the dispersal of the primary host, and any large‐scale geographical barriers that may impede gene flow. The spatial pattern of microsatellite and mitochondrial DNA variation was examined to infer patterns of dispersal of bats among 35 populations across Scotland. DNA sequence variation at the mitochondrial control region and ND1 genes revealed two distinct phylogeographical clades, with generally nonoverlapping geographical distributions except for a small number of populations where both matrilines were found in sympatry. Such discontinuity suggests that Scotland was recolonised twice following the retreat of the Pleistocene ice sheet with little subsequent matrilineal introgression. However, eight microsatellite loci showed low levels of genetic divergence among populations, even between populations from the two distinct mitochondrial DNA clades. An overall, macrogeographical genetic isolation‐by‐distance pattern was observed, with high levels of gene flow among local populations. Apparently contrasting patterns of mitochondrial and microsatellite divergence at different scales could be explained by sex‐specific differences in gene flow at large scales.

Reproductive Phenology of Bat Assemblages in Vietnamese Karst and Its Conservation Implications

Bats constitute a substantial proportion of mammal diversity within the Asian tropics and subtropics and are particularly susceptible to population losses associated with human activities. This poses a conservation concern in Asian karst areas which support high bat species diversity, yet are experiencing habitat loss and degradation and increasing pressure from tourism and extractive industries. As disturbance during crucial reproductive periods (late pregnancy, lactation and weaning) threatens reproductive success, we investigated the reproductive phenology of a bat assemblage at two karst sites in North Vietnam. Our results indicate that the timing of major reproductive events coincides among two cave-dwelling pteropodids, and among 26 cave and foliage dwelling rhinolophids, hipposiderids and vespertilionids. March–July is the primary reproductive period for all insectivorous species sampled, and protection of maternity roosts during this time is critical. Reproduction in cave-dwelling pteropodids spanned a greater period (March–December), due to two birth periods each year. Lactation in the three insectivorous families studied was positively correlated with rainfall and temperature, with weaning occurring during the peak wet season. The strong congruence in reproductive phenologies in our results and climatic homogeneity of North Vietnam (18–23°N) suggests that our study may have wider applicability within the region. Vietnamese caves support high bat diversity which is likely threatened by harvesting for consumption and tourism development nationwide. Studies to investigate and address these threats should be given high priority.

A Review of Rhinolophus (Chiroptera: Rhinolophidae) from Myanmar, Including Three Species New to the Country

Rhinolophus stheno, R. acuminatus and R. macrotis are recorded from Myanmar for the first time based on authenticated voucher material. New data from recent surveys (2000–2003) are included for R. affinis, R. malayanus, R. lepidus, R. marshalli, R. pusillus, R. pearsoni, and R. thomasi. Additional records of R. rouxi and R. sinicus are listed on the basis of museum specimens. The status of R. subbadius, R. yunanensis, R. luctus, R. trifoliatus, R. coelophyllus, and R. shameli are reviewed. This brings the total number of Rhinolophus species known from Myanmar to eighteen and the number of all bat species to ninety-four. The possible reasons for the rich diversity of Rhinolophids are discussed.

A review of the genera Myotis, Ia, Pipistrellus, Hypsugo, and Arielulus (Chiroptera: Vespertilionidae) from Myanmar (Burma), including three species new to the country

ABSTRACT Since 1999, the University of Yangon and the Harrison Institute have conducted a series of bat surveys in Myanmar. During this time, six species of vespertilionid bat have been collected that have not been recorded previously from the country. Two, Myotis horsfieldi and Myotis chinensis were published in 2001 and one, Kerivoula kachinensis, which is a new species to science, in 2004. The remaining three, Myotis mystacinus, Ia io and Pipistrellus pulveratus are included here for the first time. The record of M. mystacinus is the first authenticated one for South-East Asia. Since small vespertilionid bats are difficult to identify and are generally poorly understood, the paper includes a brief review of all 24 species of Myotis, Ia, Pipistrellus, Hypsugo, and Arielulus currently listed for Myanmar. Three of these, Myotis annectans, Pipistrellus pipistrellus and Hypsugo savii are removed from the faunal list for lack of supporting data or because of previous misidentifications. The taxon Pipistrellus peguensis is included in the synonymy of Pipistrellus javanicus. The status of Pipistrellus anthonyi is discussed. Ninety-five species of bat, including forty-three species of vespertilionid, are now recorded from the country.

Roosting habits of Daubenton's bat (Myotis daubentonii) during reproduction differs between adjacent river valleys

The use of different roost types by Daubentons bats (Myotis daubentonii) during reproduction was investigated in two adjacent river valleys in northeastern Scotland. Forty-six individuals from six colonies were radiotracked during the summers of 2004–2006. The frequency of roost switching varied with reproductive status, and was lowest in lactating females and highest in non-reproductive females, which changed roosts on average once every 5.0 and 1.5 days, respectively. Although Daubentons bats regularly switched roosts, strong faithfulness to the roosting area was apparent regardless of whether they formed maternity colonies in trees or buildings. Although most roosts found at both study areas were in trees, lactating females and juveniles in one valley roosted only in trees whereas in the other they roosted exclusively in buildings, in which ambient temperatures were significantly higher. The implications of roosting habits for the transmission of European bat lyssavirus are discussed.