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Featured researches published by Ichiro Yamato.


Journal of Biological Chemistry | 2001

ATP-dependent Affinity Change of Na+-binding Sites of V-ATPase

Takeshi Murata; Yoshimi Kakinuma; Ichiro Yamato

V-type Na+-ATPase ofEnterococcus hirae binds about six (6 ± 1) Na+ ions/enzyme molecule with a high affinity (Murata, T., Igarashi, K., Kakinuma, Y., and Yamato, I. (2000) J. Biol. Chem. 275, 13415–13419). After the addition of 5 mm ATP, the binding capacity dropped to about 2 (1.8 ± 0.3) Na+ ions/enzyme molecule, returning to the initial value concomitant with the decrease of ATP hydrolysis rate. These findings suggest that the affinity of four of six Na+-binding sites of the enzyme changes (lowers) in enzyme reaction. The ATP analogs (adenosine 5′-O-(3-thiotriphosphate) or 5′-adenylylimido-diphosphate), ADP, or aluminum fluoride that is postulated to trap ATPases at their transition state did not inhibit the Na+ binding capacity significantly. Therefore, the affinity decrease of Na+-binding sites was unlikely to be due to ATP binding alone or at the transition state of ATP hydrolysis. In the presence of 5 mm ATP, the ATPase showed strong negative cooperativity (n H = 0.16 ± 0.03) for Na+stimulation of ATPase activity. The Hill coefficient (n H) increased to 1 in parallel to the decrease of ATP concentration in the reaction mixture. Thus, the ATP-dependent affinity change cooperatively occurs in continuous enzyme reaction.


Journal of Biological Chemistry | 2002

Arginine Residue at Position 573 in Enterococcus hirae Vacuolar-type ATPase NtpI Subunit Plays a Crucial Role in Na+ Translocation

Miyuki Kawano; Kazuei Igarashi; Ichiro Yamato; Yoshimi Kakinuma


Archive | 2017

Energy flow in biological system: Bioenergy transduction of V1-ATPase molecular rotary motor from E. hirae

Ichiro Yamato; Takeshi Murata; Andrei Khrennikov


生物物理 | 2013

1P172 腸内連鎖球菌V-ATPaseの大腸菌発現系(11.分子モーター,ポスター,日本生物物理学会年会第51回(2013年度))

Shohei Matsudo; Suhaila Rahman; Shinya Saijo; Misaki Yamamoto; Yoshimi Kakinuma; Kenji Mizutani; Takeshi Murata; Ichiro Yamato


生物物理 | 2013

1P173 腸内連鎖球菌V型ATPaseのAサブユニットの精製と結晶化(11.分子モーター,ポスター,日本生物物理学会年会第51回(2013年度))

Aki Saito; Yasuko Saito; Shinya Saijo; Misaki Yamamoto; Yoshimi Kakinuma; Kenji Mizutani; Takeshi Murata; Ichiro Yamato


生物物理 | 2013

3P224 支持体を持つ人工細胞の開発(13D.生体膜・人工膜:輸送,ポスター,日本生物物理学会年会第51回(2013年度))

Yasuto Sasaki; Misaki Yamamoto; Ichiro Yamato


生物物理 | 2013

3P264 FCANAL(構造を基にしたタンパク質機能御予測法)の様々なタンパク質への適用(22B.生命情報科学:機能ゲノミクス,ポスター,日本生物物理学会年会第51回(2013年度))

Hiroko Sagisaka; Misaki Yamamoto; Ichiro Yamato


生物物理 | 2013

3P165 腸球菌由来V_1ATPaseの軸強制回転シミュレーションによる回転機構の解明(11.分子モーター,ポスター,日本生物物理学会年会第51回(2013年度))

Yuta Isaka; Ichiro Yamato; Takeshi Murata; Mitsunori Ikeguchi


生物物理 | 2009

3P-134 腸内連鎖球菌V型ATPaseの膜内在性サブユニット(NtpI)の発現と精製(分子モーター,第47回日本生物物理学会年会)

Misaki Yamamoto; Kenji Mizutani; Yoshimi Kakinuma; Ichiro Yamato; So Iwata; Takeshi Murata


生物物理 | 2009

1P-192 OmpFポリンの陽イオン透過シミュレーション(生体膜・人工膜-興奮・チャネル,第47回日本生物物理学会年会)

Yasuhiro Matsuura; Atsushi Suenaga; Tadashi Ando; Ichiro Yamato

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Kenji Mizutani

Yokohama City University

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Shinya Saijo

Tokyo University of Science

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Tadashi Ando

Tokyo University of Science

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Atsushi Suenaga

Tokyo University of Science

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Kazuei Igarashi

Muroran Institute of Technology

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