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Dive into the research topics where Igor Poberaj is active.

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Featured researches published by Igor Poberaj.


Proceedings of the National Academy of Sciences of the United States of America | 2010

Self-assembled artificial cilia

Mojca Vilfan; Anton Potočnik; Blaž Kavčič; Natan Osterman; Igor Poberaj; Andrej Vilfan; Dušan Babič

Due to their small dimensions, microfluidic devices operate in the low Reynolds number regime. In this case, the hydrodynamics is governed by the viscosity rather than inertia and special elements have to be introduced into the system for mixing and pumping of fluids. Here we report on the realization of an effective pumping device that mimics a ciliated surface and imitates its motion to generate fluid flow. The artificial biomimetic cilia are constructed as long chains of spherical superparamagnetic particles, which self-assemble in an external magnetic field. Magnetic field is also used to actuate the cilia in a simple nonreciprocal manner, resulting in a fluid flow. We prove the concept by measuring the velocity of a cilia-pumped fluid as a function of height above the ciliated surface and investigate the influence of the beating asymmetry on the pumping performance. A numerical simulation was carried out that successfully reproduced the experimentally obtained data.


The FASEB Journal | 2004

Slow spontaneous secretion from single large dense-core vesicles monitored in neuroendocrine cells

Matjaž Stenovec; Marko Kreft; Igor Poberaj; William J. Betz; Robert Zorec

Hormones are released from cells by passing through an exocytotic pore that forms after vesicle and plasma membrane fusion. In stimulated exocytosis vesicle content is discharged swiftly. Although rapid vesicle discharge has also been proposed to mediate basal secretion, this has not been studied directly. We investigated basal hormone release by preloading fluorescent peptides into single vesicles. The hormone discharge, monitored with confocal microscopy, was compared with the simultaneous loading of vesicle by FM styryl dye. In stimulated vesicles FM 4‐64 (4 μM), loading and hormone discharge occurs within seconds. In contrast, in ~50% of spontaneously releasing vesicles, the vesicle content discharge and the FM 4‐64 loading were slow (~3 min). These results show that in peptide secreting neuroendocrine cells the elementary vesicle content discharge differs in basal and in stimulated exocytosis. It is proposed that the view dating back for some decades, which is that, at rest, the vesicle discharge of hormones and neurotransmitters is similar to that occurring after stimulation, needs to be extended. In addition to the classical paradigm that secretory capacity of a cell is determined by controlling the probability of occurrence of elementary exocytotic events, one will have to consider activity modulation of elementary exocytotic events as well.


Physical Review Letters | 2007

Observation of condensed phases of quasiplanar core-softened colloids.

Natan Osterman; Dušan Babič; Igor Poberaj; Jure Dobnikar; P. Ziherl

We experimentally study the condensed phases of repelling core-softened spheres in two dimensions. The dipolar pair repulsion between superparamagnetic spheres trapped in a thin cell is induced by a transverse magnetic field and softened by suitably adjusting the cell thickness. We scan a broad density range and we materialize a large part of the theoretically predicted phases in systems of core-softened particles, including expanded and close-packed hexagonal, square, chainlike, stripe or labyrinthine, and honeycomb phase. Further insight into their structure is provided by Monte Carlo simulations.


Review of Scientific Instruments | 2001

Fiber optic catalytic probe for weakly ionized oxygen plasma characterization

Dušan Babič; Igor Poberaj; M. Mozetič

Construction and operation of a novel fiber optic catalytic probe is presented. The probe is intended for measurements of atomic oxygen density in plasma postglows. The operation of the probe is based on a catalytic recombination of oxygen atoms and remote temperature sensing via optical fiber. Compared to the classical catalytic probes, the new approach results in smaller dimensions, better sensitivity, and higher immunity to the electromagnetic interference. Comparative measurements of atomic oxygen density performed simultaneously with both types of probes demonstrated a superior performance of the novel probes.


Journal of Vacuum Science and Technology | 2002

Comparison of fiber optics and standard nickel catalytic probes for determination of neutral oxygen atoms concentration

Igor Poberaj; Miran Mozetič; Dušan Babič

The density of neutral oxygen atoms in a plasma postglow chamber was measured with a standard Ni catalytic probe and a fiber optical catalytic probe. A highly dissociated oxygen plasma was created in the discharge chamber with an inductively coupled rf generator with a frequency of 27.12 MHz and output power of 200 W. The measurements were performed in the postglow chamber where a movable recombinator for oxygen atoms was placed. The recombinator enabled the adjustment of O density independently of discharge parameters. The density of neutral oxygen atoms was determined at different pressures and different positions of the recombinator. The O density was between 5×1020 and 2×1021 m−3. The fiber probe expressed excellent repeatability as compared to the standard probe. As long as the temperature of the catalyst was above 100 °C both probes gave similar results. At a lower temperature of the standard probe, however, the optical fiber probe gave more reasonable results. The discrepancy was attributed to the ...


Journal of Vacuum Science and Technology | 2003

Comparison of NO titration and fiber optics catalytic probes for determination of neutral oxygen atom concentration in plasmas and postglows

Miran Mozetič; A. Ricard; Dušan Babič; Igor Poberaj; Jacque Levaton; Virginie Monna; Uros Cvelbar

A comparative study of two different absolute methods NO titration and fiber optics catalytic probe (FOCP) for determination of neutral oxygen atom density is presented. Both methods were simultaneously applied for measurements of O density in a postglow of an Ar/O2 plasma created by a surfatron microwave generator with the frequency of 2.45 GHz an adjustable output power between 30 and 160 W. It was found that the two methods gave similar results. The advantages of FOCP were found to be as follows: it is a nondestructive method, it enables real time measuring of the O density, it does not require any toxic gas, and it is much faster than NO titration. The advantage of NO titration was found to be the ability to measure O density in a large range of dissociation of oxygen molecules.


Journal of Applied Physics | 2005

A diagnostic method for real-time measurements of the density of nitrogen atoms in the postglow of an Ar–N2 discharge using a catalytic probe

Miran Mozetič; Uros Cvelbar; Alenka Vesel; A. Ricard; Dušan Babič; Igor Poberaj

We determined the density of neutral nitrogen atoms in an Ar–N2 postglow using a fiber-optics catalytic probe. The probe, which had a catalyst made of nitrided iron, was calibrated with a NO titration. The recombination coefficient for the heterogeneous recombination of N atoms on the nitrided iron surface was determined by comparing the probe signal with the NO titration. Within the limits of experimental error the coefficient was found to be independent of the catalyst temperature between 400 and 650K and had a value of 0.21±0.04. Real-time measurements of the N-atom density were performed at a nitrogen flow of 600SCCM (standard cubic centimeter per minute) for several discharge powers between 80 and 300W, and for argon flow rates between 200 and 3000SCCM. With increasing discharge power the N-atom density increased monotonously; with increasing Ar flow the N-atom density at first increased, reaching a broad maximum at about 1.8×1021m−3 for an Ar flow of 2000SCCM, after which the N-atom density decrease...


Applied Physics Letters | 2009

Magnetically actuated microrotors with individual pumping speed and direction control

B. Kavčič; Dušan Babič; Natan Osterman; B. Podobnik; Igor Poberaj

We demonstrate an experimental realization of a microscale pump self-assembled from superparamagnetic colloidal spheres and driven by an external magnetic field, where a system of microelectrodes controls the pump rotor by dielectrophoretic force. Whereas an external magnetic field is used to assemble and drive the rotor, which allows parallel fabrication and actuation of many such devices, the microelectrodes enable control of an individual rotor and thus regulate pumping speed and direction of any single pump in the microfluidic device. Dielectrophoretically controlled micropumps can be fabricated with existing microfabrication techniques and can be easily integrated into complex microfluidic devices.


European Physical Journal E | 2008

Electrically tunable diffraction of light from 2D nematic colloidal crystals

M. Humar; Miha Škarabot; Miha Ravnik; Slobodan Žumer; Igor Poberaj; Dušan Babič; Igor Muševič

We show that diffraction of visible light from 2D dipolar nematic colloidal crystals can be tuned electrically. When the external electric field of ∼ 1V/μm is applied in a direction perpendicular to the plane of the 2D colloidal crystal, the induced strain is highly anisotropic, and the inter-colloidal spacing changes by as much as 20% along one direction and ∼ 2% along the perpendicular one. Although the speed of response is in the range of several seconds, this novel mechanism could provide interesting photonic applications.


Biomicrofluidics | 2011

Measurement of fluid flow generated by artificial cilia

Gašper Kokot; Mojca Vilfan; Natan Osterman; Andrej Vilfan; Blaž Kavčič; Igor Poberaj; Dušan Babič

We observed and measured the fluid flow that was generated by an artificial cilium. The cilium was composed of superparamagnetic microspheres, in which magnetic dipole moments were induced by an external magnetic field. The interaction between the dipole moments resulted in formation of long chains-cilia, and the same external magnetic field was also used to drive the cilia in a periodic manner. Asymmetric periodic motion of the cilium resulted in generation of fluid flow and net pumping of the surrounding fluid. The flow and pumping performance were closely monitored by introducing small fluorescent tracer particles into the system. By detecting their motion, the fluid flow around an individual cilium was mapped and the flow velocities measured. We confirm that symmetric periodic beating of one cilium results in vortical motion only, whereas asymmetry is required for additional translational motion. We determine the effect of asymmetry on the pumping performance of a cilium, verify the theoretically predicted optimal pumping conditions, and determine the fluid behaviour around a linear array of three neighbouring cilia. In this case, the contributions of neighbouring cilia enhance the maximal flow velocity compared with a single cilium and contribute to a more uniform translational flow above the surface.

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Igor Muševič

Radboud University Nijmegen

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Miha Ravnik

University of Ljubljana

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Marko Kreft

University of Ljubljana

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Robert Zorec

University of Ljubljana

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