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Dive into the research topics where Irina Dulubova is active.

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Featured researches published by Irina Dulubova.


The EMBO Journal | 1999

A conformational switch in syntaxin during exocytosis: role of munc18

Irina Dulubova; Shuzo Sugita; Sandra Hill; Masahiro Hosaka; Imma Fernandez; Thomas C. Südhof; Josep Rizo

Syntaxin 1, an essential protein in synaptic membrane fusion, contains a helical autonomously folded N‐terminal domain, a C‐terminal SNARE motif and a transmembrane region. The SNARE motif binds to synaptobrevin and SNAP‐25 to assemble the core complex, whereas almost the entire cytoplasmic sequence participates in a complex with munc18‐1, a neuronal Sec1 homolog. We now demonstrate by NMR spectroscopy that, in isolation, syntaxin adopts a ‘closed’ conformation. This default conformation of syntaxin is incompatible with core complex assembly which requires an ‘open’ syntaxin conformation. Using site‐directed mutagenesis, we find that disruption of the closed conformation abolishes the ability of syntaxin to bind to munc18‐1 and to inhibit secretion in PC12 cells. These results indicate that syntaxin binds to munc18‐1 in a closed conformation and suggest that this conformation represents an essential intermediate in exocytosis. Our data suggest a model whereby, during exocytosis, syntaxin undergoes a large conformational switch that mediates the transition between the syntaxin–munc18‐1 complex and the core complex.


Cell | 2011

RIM proteins tether Ca2+-channels to presynaptic active zones via a direct PDZ-domain interaction

Pascal S. Kaeser; Lunbin Deng; Yun Wang; Irina Dulubova; Xinran Liu; Josep Rizo; Thomas C. Südhof

At a synapse, fast synchronous neurotransmitter release requires localization of Ca(2+) channels to presynaptic active zones. How Ca(2+) channels are recruited to active zones, however, remains unknown. Using unbiased yeast two-hybrid screens, we here identify a direct interaction of the central PDZ domain of the active-zone protein RIM with the C termini of presynaptic N- and P/Q-type Ca(2+) channels but not L-type Ca(2+) channels. To test the physiological significance of this interaction, we generated conditional knockout mice lacking all multidomain RIM isoforms. Deletion of RIM proteins ablated most neurotransmitter release by simultaneously impairing the priming of synaptic vesicles and by decreasing the presynaptic localization of Ca(2+) channels. Strikingly, rescue of the decreased Ca(2+)-channel localization required the RIM PDZ domain, whereas rescue of vesicle priming required the RIM N terminus. We propose that RIMs tether N- and P/Q-type Ca(2+) channels to presynaptic active zones via a direct PDZ-domain-mediated interaction, thereby enabling fast, synchronous triggering of neurotransmitter release at a synapse.


Cell | 1998

Three-Dimensional Structure of an Evolutionarily Conserved N-Terminal Domain of Syntaxin 1A

Imma Fernandez; Josep Ubach; Irina Dulubova; Xiangyang Zhang; Thomas C. Südhof; Josep Rizo

Syntaxin 1A plays a central role in neurotransmitter release through multiple protein-protein interactions. We have used NMR spectroscopy to identify an autonomously folded N-terminal domain in syntaxin 1A and to elucidate its three-dimensional structure. This 120-residue N-terminal domain is conserved in plasma membrane syntaxins but not in other syntaxins, indicating a specific role in exocytosis. The domain contains three long alpha helices that form an up-and-down bundle with a left-handed twist. A striking residue conservation is observed throughout a long groove that is likely to provide a specific surface for protein-protein interactions. A highly acidic region binds to the C2A domain of synaptotagmin I in a Ca2+-dependent interaction that may serve as an electrostatic switch in neurotransmitter release.


Proceedings of the National Academy of Sciences of the United States of America | 2007

Munc18-1 binds directly to the neuronal SNARE complex.

Irina Dulubova; Mikhail Khvotchev; Siqi Liu; Iryna Huryeva; Thomas C. Südhof; Josep Rizo

Both SM proteins (for Sec1/Munc18-like proteins) and SNARE proteins (for soluble NSF-attachment protein receptors) are essential for intracellular membrane fusion, but the general mechanism of coupling between their functions is unclear, in part because diverse SM protein/SNARE binding modes have been described. During synaptic vesicle exocytosis, the SM protein Munc18-1 is known to bind tightly to the SNARE protein syntaxin-1, but only when syntaxin-1 is in a closed conformation that is incompatible with SNARE complex formation. We now show that Munc18-1 also binds tightly to assembled SNARE complexes containing syntaxin-1. The newly discovered Munc18-1/SNARE complex interaction involves contacts of Munc18-1 with the N-terminal Habc domain of syntaxin-1 and the four-helical bundle of the assembled SNARE complex. Together with earlier studies, our results suggest that binding of Munc18-1 to closed syntaxin-1 is a specialization that evolved to meet the strict regulatory requirements of neuronal exocytosis, whereas binding of Munc18-1 to assembled SNARE complexes reflects a general function of SM proteins involved in executing membrane fusion.


Science | 2008

Conformational switch of syntaxin-1 controls synaptic vesicle fusion.

Stefan H. Gerber; Jong Cheol Rah; Sang Won Min; Xinran Liu; Heidi de Wit; Irina Dulubova; Alexander C. Meyer; Josep Rizo; Marife Arancillo; Robert E. Hammer; Matthijs Verhage; Christian Rosenmund; Thomas C. Südhof

During synaptic vesicle fusion, the soluble N-ethylmaleimide-sensitive factor–attachment protein receptor (SNARE) protein syntaxin-1 exhibits two conformations that both bind to Munc18-1: a “closed” conformation outside the SNARE complex and an “open” conformation in the SNARE complex. Although SNARE complexes containing open syntaxin-1 and Munc18-1 are essential for exocytosis, the function of closed syntaxin-1 is unknown. We generated knockin/knockout mice that expressed only open syntaxin-1B. Syntaxin-1BOpen mice were viable but succumbed to generalized seizures at 2 to 3 months of age. Binding of Munc18-1 to syntaxin-1 was impaired in syntaxin-1BOpen synapses, and the size of the readily releasable vesicle pool was decreased; however, the rate of synaptic vesicle fusion was dramatically enhanced. Thus, the closed conformation of syntaxin-1 gates the initiation of the synaptic vesicle fusion reaction, which is then mediated by SNARE-complex/Munc18-1 assemblies.


The EMBO Journal | 2005

A Munc13/RIM/Rab3 tripartite complex: from priming to plasticity?

Irina Dulubova; Xuelin Lou; Jun Lu; Iryna Huryeva; Amer Alam; Ralf Schneggenburger; Thomas C. Südhof; Josep Rizo

α‐RIMs and Munc13s are active zone proteins that control priming of synaptic vesicles to a readily releasable state, and interact with each other via their N‐terminal sequences. The α‐RIM N‐terminal sequence also binds to Rab3s (small synaptic vesicle GTPases), an interaction that regulates presynaptic plasticity. We now demonstrate that α‐RIMs contain adjacent but separate Munc13‐ and Rab3‐binding sites, allowing formation of a tripartite Rab3/RIM/Munc13 complex. Munc13 binding is mediated by the α‐RIM zinc‐finger domain. Elucidation of the three‐dimensional structure of this domain by NMR spectroscopy facilitated the design of a mutation that abolishes α‐RIM/Munc13 binding. Selective disruption of this interaction in the calyx of Held synapse decreased the size of the readily releasable vesicle pool. Our data suggest that the ternary Rab3/RIM/Munc13 interaction approximates synaptic vesicles to the priming machinery, providing a substrate for presynaptic plasticity. The modular architecture of α‐RIMs, with nested binding sites for Rab3 and other targets, may be a general feature of Rab effectors that share homology with the α‐RIM N‐terminal sequence.


Developmental Cell | 2002

Sly1 binds to Golgi and ER syntaxins via a conserved N-terminal peptide motif

Tomohiro Yamaguchi; Irina Dulubova; Sang Won Min; Xiaocheng Chen; Josep Rizo; Thomas C. Südhof

Sec1/munc18-like proteins (SM proteins) and SNARE complexes are probably universally required for membrane fusion. However, the molecular mechanism by which they interact has only been defined for synaptic vesicle fusion where munc18 binds to syntaxin in a closed conformation that is incompatible with SNARE complex assembly. We now show that Sly1, an SM protein involved in Golgi and ER fusion, binds to a short, evolutionarily conserved N-terminal peptide of Sed5p and Ufe1p in yeast and of syntaxins 5 and 18 in vertebrates. In these syntaxins, the Sly1 binding peptide is upstream of a separate, autonomously folded N-terminal domain. These data suggest a potentially general mechanism by which SM proteins could interact with peptides in target proteins independent of core complex assembly and suggest that munc18 binding to syntaxin is an exception.


The EMBO Journal | 2002

How Tlg2p/syntaxin 16 'snares’ Vps45

Irina Dulubova; Tomohiro Yamaguchi; Yan Gao; Sang Won Min; Iryna Huryeva; Thomas C. Südhof; Josep Rizo

Soluble N‐ethylmaleimide sensitive factor‐attachment protein receptors (SNAREs) and Sec1p/Munc18‐homologs (SM proteins) play key roles in intracellular membrane fusion. The SNAREs form tight four‐helix bundles (core complexes) that bring the membranes together, but it is unclear how this activity is coupled to SM protein function. Studies of the yeast trans‐Golgi network (TGN)/endosomal SNARE complex, which includes the syntaxin‐like SNARE Tlg2p, have suggested that its assembly requires activation by binding of the SM protein Vps45p to the cytoplasmic region of Tlg2p folded into a closed conformation. Nuclear magnetic resonance and biochemical experiments now show that Tlg2p and Pep12p, a late‐ endosomal syntaxin that interacts functionally but not directly with Vps45p, have a domain structure characteristic of syntaxins but do not adopt a closed conformation. Tlg2p binds tightly to Vps45p via a short N‐terminal peptide motif that is absent in Pep12p. The Tlg2p/Vps45p binding mode is shared by the mammalian syntaxin 16, confirming that it is a Tlg2p homolog, and resembles the mode of interaction between the SM protein Sly1p and the syntaxins Ufe1p and Sed5p. Thus, this mechanism represents the most widespread mode of coupling between syntaxins and SM proteins.


Nature Structural & Molecular Biology | 2005

A minimal domain responsible for Munc13 activity

Jayeeta Basu; Nan Shen; Irina Dulubova; Jun Lu; Rong Guan; Oleg L. Guryev; Nick V. Grishin; Christian Rosenmund; Josep Rizo

Munc13 proteins are essential in neurotransmitter release, controlling the priming of synaptic vesicles to a release-ready state. The sequences responsible for this priming activity are unknown. Here we identify a large α-helical domain of mammalian Munc13-1 that is autonomously folded and is sufficient to rescue the total arrest in neurotransmitter release observed in hippocampal neurons lacking Munc13s.


Journal of Cell Biology | 2009

Munc18-1 binding to the neuronal SNARE complex controls synaptic vesicle priming

Ferenc Deák; Yi Xu; Wen-Pin Chang; Irina Dulubova; Mikhail Khvotchev; Xinran Liu; Thomas C. Südhof; Josep Rizo

Munc18-1 and soluble NSF attachment protein receptors (SNAREs) are critical for synaptic vesicle fusion. Munc18-1 binds to the SNARE syntaxin-1 folded into a closed conformation and to SNARE complexes containing open syntaxin-1. Understanding which steps in fusion depend on the latter interaction and whether Munc18-1 competes with other factors such as complexins for SNARE complex binding is critical to elucidate the mechanisms involved. In this study, we show that lentiviral expression of Munc18-1 rescues abrogation of release in Munc18-1 knockout mice. We describe point mutations in Munc18-1 that preserve tight binding to closed syntaxin-1 but markedly disrupt Munc18-1 binding to SNARE complexes containing open syntaxin-1. Lentiviral rescue experiments reveal that such disruption selectively impairs synaptic vesicle priming but not Ca2+-triggered fusion of primed vesicles. We also find that Munc18-1 and complexin-1 bind simultaneously to SNARE complexes. These results suggest that Munc18-1 binding to SNARE complexes mediates synaptic vesicle priming and that the resulting primed state involves a Munc18-1–SNARE–complexin macromolecular assembly that is poised for Ca2+ triggering of fusion.

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Josep Rizo

University of Texas Southwestern Medical Center

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Iryna Huryeva

University of Texas Southwestern Medical Center

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Jun Lu

University of Texas Southwestern Medical Center

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Diana R. Tomchick

University of Texas Southwestern Medical Center

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Han Dai

University of Texas Southwestern Medical Center

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Sang Won Min

University of Texas Southwestern Medical Center

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Tomohiro Yamaguchi

University of Texas Southwestern Medical Center

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