Isaac Bekele

Patterns of Morphological Variation in a Sample of Cacao (Theobroma Cacao L.) Germplasm from the International Cocoa Genebank, Trinidad

The International Cocoa Genebank, Trinidad (ICG,T) contains 2300 accessions representing a broad range of diversity and geographic origins. This study was undertaken to examine the phenotypic relationships in a diverse sample of 600 cacao accessions from the Genebank. The major objectives were to test the applicability of the accepted nomenclature, viz., the definition of classes, as well as to elucidate the relationships between wild and cultivated germplasm and among accession groups. This will facilitate efficient utilisation, management and improvement of cacao genetic resources through the identification of potentially heterotic groups. In addition, information on morphological variation may be considered along with allelic richness or gene frequencies in selecting core collections, and when formulating strategies for future collections in the wild. Considerable phenotypic variation (high coefficients of variation and Shannon Weaver Diversity Index values) in the germplasm studied was found, and the main groups of cacao were clearly separated. Wild cacao was differentiated from cultivated types by all of the quantitative descriptors except pod length. Recognised genetic groups (Trinitario and Forastero) were discriminated by several quantitative traits including sepal length, cotyledon weight, length and width, and pod index. Principal Component Analysis differentiated among 14 accession groups according to geographic origin and genetic grouping. Cotyledon weight, length and number, pedicel column colour, mature pod ridge colour, sepal length, pod basal constriction and surface texture, and ovule number accounted for most of the variation recorded. The observed improvement in the cultivated germplasm, in terms of agronomic traits such as seed weight and pod index, attests to the success of past selection activities. This apparent improvement (particularly among Refractario germplasm) appears to be accompanied by increased style length, a finding that warrants further study. The reduced diversity in sepal length, ligue width, ovule number, and cotyledon length in the cultivated compared to the wild germplasm is consistent with the narrowing of the genetic base in the former. These results have significance for cacao breeding programmes, conservation and future collecting strategies.

Health burden of co-morbid asthma and allergic rhinitis in West Indian children

BACKGROUND Co-morbid allergic rhinitis (AR) and asthma has not been studied in Caribbean countries where there is a high prevalence of childhood asthma. METHODS Using the International Primary Care Airways Group (IPAG) guidelines to determine AR, care-givers of 393 (response rate=100%) children attending asthma clinics in selected public sector health facilities in Trinidad, West Indies, were interviewed. RESULTS Children (393) were between 2-17 years and included 239 (60.8%) boys and 154 (39.2%) girls. As many as 53.9% of children sampled (95% CI 45.9-55.8) suffered from AR. Children exposed to household smoking were nearly twice as likely to have AR (p<0.0041, OR=1.9, CI 1.22-2.88). Significantly (p<0.01) more asthmatics with AR (154, 58.6%) visited Accident and Emergency (A&E) in the past 12 months. The odds of visiting A&E at least once in the past 12 months for asthmatics with AR were 1.75 (95% CI 1.15-2.68). The average frequency of A&E visits was higher in children who also suffered from AR (1.75 vs 1.36, p<0.04). Age was negatively correlated (-0.21, p<0.005) with exacerbation frequency for asthmatics without AR suggesting A&E visits are independent of age in co-morbid disease. More children with AR (>60%) suffer day and night symptoms (p<0.001), and miss school (59.8%) (p<0.03) at least once a week (p<0.002) than asthmatics without AR (OR=1.5, 95% CI=1.03-2.30). CONCLUSIONS AR is prevalent in 53.9% of Trinidadian children with asthma. The burden of co-morbid disease in asthmatic children is associated with increased likelihood of asthma-related A&E visits, day and night symptoms and absence from school.

Relations of microbiome characteristics to edaphic properties of tropical soils from Trinidad

Understanding how community structure of Bacteria, Archaea, and Fungi varies as a function of edaphic characteristics is key to elucidating associations between soil ecosystem function and the microbiome that sustains it. In this study, non-managed tropical soils were examined that represented a range of edaphic characteristics, and a comprehensive soil microbiome analysis was done by Illumina sequencing of amplicon libraries that targeted Bacteria (universal prokaryotic 16S rRNA gene primers), Archaea (primers selective for archaeal 16S rRNA genes), or Fungi (internal transcribed spacer region). Microbiome diversity decreased in the order: Bacteria > Archaea > Fungi. Bacterial community composition had a strong relationship to edaphic factors while that of Archaea and Fungi was comparatively weak. Bacterial communities were 70–80% alike, while communities of Fungi and Archaea had 40–50% similarity. While each of the three component communities differed in species turnover patterns, soils having relatively similar bacterial communities also housed similar archaeal communities. In contrast, the composition of fungal communities had no correlation to bacterial or archaeal communities. Bacterial and archaeal diversity had significant (negative) correlations to pH, whereas fungal diversity was not correlated to pH. Edaphic characteristics that best explained variation between soils in bacterial community structure were: total carbon, sodium, magnesium, and zinc. For fungi, the best variables were: sodium, magnesium, phosphorus, boron, and C/N. Archaeal communities had two sets of edaphic factors of equal strength, one contained sulfur, sodium, and ammonium-N and the other was composed of clay, potassium, ammonium-N, and nitrate-N. Collectively, the data indicate that Bacteria, Archaea, and Fungi did not closely parallel one another in community structure development, and thus microbiomes in each soil acquired unique identities. This divergence could in part reflect the finding that unknown factor(s) were stronger than edaphic characteristics in shaping fungal and archaeal communities.

Lead pollution in East Trinidad resulting from lead recycling and smelting activities.

Several problems of acute lead poisoning in children have been identified over the past three years in Trinidad. In all cases investigated so far, continual exposure to lead from battery recycling or from lead-smelter wastes have been found responsible. In East Trinidad, illicit dumping of lead wastes from such sources has resulted in several sites becoming heavily contaminated. Some of these sites are in environmentally sensitive areas, including rivers and wetlands, and require urgent remedial action. Results of monitoring studies at several of these sites show lead levels as high as 75% by weight. The potential for surface and ground water contamination exists, as evidenced by leaching of lead into surrounding areas.

Farmers' Attitude towards a Participatory Research Method Used to Evaluate Weed Management Strategies in Bananas.

Abstract In this study, farmers were engaged in a participatory research project and their attitudes evaluated. The purpose was to identify the characteristics of farmers who are favourably predisposed towards meaningful participation in the process. Several cover crops were tested for possible use in the management of watergrass (Commelina diffusa), a noxious weed in banana cultivation. Small, limited-resource farmers were exposed to the essentials of systematic research through a process of experiential learning using participatory techniques. Thirty-six farmers evaluated three cover crops against the current weed control practice of farmers, which served as the control. Farmers and researchers collaborated on the experimental design, treatment allocation, data to be collected and the form of the analysis. Summary data were subjected by the farmers to the Overlap Test to evaluate differences among the treatments. Results indicated that one cover crop, Desmodium heterocarpon, was better than the others in controlling watergrass. These results were confirmed by ANOVA. A Likert-type scale, used to assess farmers’ attitude, showed that overall, farmers were generally favourable towards the process. Differences in responses to attitudinal statements were based mainly on farmers’ differing education levels. Some level of attrition was experienced in this process, mainly by the older and more experienced farmers. The younger, less experienced farmers completed the trials to a large extent. The results provide useful information for the selection of farmers to be involved in future participatory technology development initiatives.

Microbial Community Structure and Function of Soil Following Ecosystem Conversion from Native Forests to Teak Plantation Forests

Soil microbial communities can form links between forest trees and functioning of forest soils, yet the impacts of converting diverse native forests to monoculture plantations on soil microbial communities are limited. This study tested the hypothesis that conversion from a diverse native to monoculture ecosystem would be paralleled by a reduction in the diversity of the soil microbial communities. Soils from Teak (Tectona grandis) plantations and adjacent native forest were examined at two locations in Trinidad. Microbial community structure was determined via Illumina sequencing of bacterial 16S rRNA genes and fungal internal transcribed spacer (ITS) regions, and by phospholipid fatty acid (PLFA) analysis. Functional characteristics of microbial communities were assessed by extracellular enzyme activity (EEA). Conversion to Teak plantation had no effect on species richness or evenness of bacterial or fungal communities, and no significant effect on EEA. However, multivariate analyses (nested and two-way crossed analysis of similarity) revealed significant effects (p < 0.05) of forest type (Teak vs. native) upon the composition of the microbial communities as reflected in all three assays of community structure. Univariate analysis of variance identified two bacterial phyla that were significantly more abundant in the native forest soils than in Teak soils (Cyanobacteria, p = 0.0180; Nitrospirae, p = 0.0100) and two more abundant in Teak soils than in native forest (candidate phyla TM7, p = 0.0004; WS6, p = 0.044). Abundance of an unidentified class of arbuscular mycorrhizal fungi (AMF) was significantly greater in Teak soils, notable because Teak is colonized by AMF rather than by ectomycorrihzal fungi that are symbionts of the native forest tree species. In conclusion, microbial diversity indices were not affected in the conversion of native forest to teak plantation, but examination of specific bacterial taxa showed that there were significant differences in community composition.

Modelling response patterns of physico-chemical indicators during high-rate composting of green waste for suppression of Pythium ultimum

High-rate composting studies on green waste, i.e. banana leaves (BL) and lawn clippings (LC), were conducted in 0.25-m3 rotary barrel composters to evaluate and model changes in key physico-chemical parameters during composting. Time to compost maturity and antagonistic effects and relationships of composts against Pythium ultimum were also investigated. Higher temperatures were achieved in LC compost (LCC), which did not translate to higher total organic carbon (TOC) loss but resulted in lower carbon to nitrogen ratio (C:N) and a more mature compost. With the exception of electrical conductivity (EC), net decreases were observed in pH, TOC and C:N across compost types. Total Kjeldahl nitrogen (TKN) showed a net increase in LCC and a net decrease in BLC. With the exception of TOC and pH, the results showed that compost type and time had a significant effect on the respective TKN, EC and C:N models. Compost temperature and TOC were best described by the critical exponential and rectangular hyperbola functions, respectively. Whereas TKN, C:N and pH were described using double Fourier functions and EC using Fourier functions. Composts achieved maturity within 19 days and significantly inhibited the growth of P. ultimum. Bacterial population was positively related to growth inhibition (GI) across compost types, whereas total microbial population had a positive relationship with GI in LCC. Evidence suggests that multiple groups of microorganisms contributed to GI through antibiosis and competition for resources. Composts were determined to be suitable for use as components of plant growth substrates based on compost maturity indices.

Prediction of Soil Cadmium Bioavailability to Cacao (Theobroma cacao L.) using Single-Step Extraction Procedures

In this study, complexation extractants ammonium bicarbonate diethylene triamine pentaacetic acid (AB-DTPA), diethylene triamine pentaacetic acid (DTPA), and ethylene diamine tetraacetic acid (EDTA) and mild cation-exchange extractants calcium chloride (CaCl2) and ammonium nitrate (NH4NO3) were used to evaluate the bioavailability of soil cadmium (Cd) to cacao in the field. Among the five extractants, the extractable Cd generally followed the order EDTA > DTPA > AB-DTPA > CaCl2 > NH4NO3. Correlation analysis was done between the extractable Cd in soil and total Cd content of cacao tissues (nibs, shells, leaves, and pods). The Cd extracted by CaCl2 and NH4NO3 was significantly (P < 0.05) correlated with some of the tissues but their Pearson correlation coefficients were weak. In contrast, extractants AB-DTPA, DTPA, and EDTA showed stronger, significant correlations to the Cd concentration in all four tissues. Overall, regression analysis demonstrated that AB-DTPA, DTPA, or EDTA can be used to predict bioavailable Cd in soils for cacao. Of these, AB-DTPA and DTPA both showed the strongest correlations compared to EDTA. However, the ease of preparation and the superior shelf-life of DTPA over AB-DPTA make it the preferred reagent for Cd bioavailability extractions from cacao soils and is currently being used to develop cost-effective soil treatments to reduce bioavailable Cd to cacao plants.

Clinical features of a paediatric asthma population in Trinidad.

Clinical features and management of paediatric asthma, highly prevalent in the Caribbean, was explored in Trinidadian children.

Achado de bactérias selecionadas em crianças de Trinidad com doença amigdaliana crônica

Faringoamigdalite na populacao pediatrica e largamente tratada com antibioticos. OBJETIVO: Estudar a microflora presente na superficie e no nucleo de amigdalas apos adenoamigdalectomia eletiva em criancas. METODO: Amigdalas de 102 criancas de Trinidad foram prospectivamente estudadas por meio de culturas e identificacoes bacteriologicas feitas a partir de amostras das superficies e nucleos de suas amigdalas entre 2005-2006. RESULTADOS: A partir de 360 amigdalas, foram isolados Streptococcus spp. (51,3%), Staphylococcus spp. (42,3%) e Gram-Negativos (6,4%). A identificacao de estafilococos e estreptococos tanto na superficie quanto no nucleo foi semelhante (p>0,05). Encontramos mais (p<0,001) Streptococcus spp. nas superficies (82,2%) do que nos nucleos (63,3%); a prevalencia de estreptococos alfa-hemoliticos foi maior (p<0,001) do que aquela de estreptococos beta-hemoliticos nas superficies (74,4% vs. 18,6%) do que nos nucleos (58,9% vs. 13,7%). Nao houve concordância entre superficies e nucleos com relacao a estreptococos (p<0,0004) e estreptococos alfa-hemoliticos (p<0,007). Estreptococos beta-hemoliticos foram mais identificados (p<0,05) em criancas dentre 6-16 anos do que naquelas entre 1-5 anos de idade (31% e 23,8% vs 12,5% e 8%). A prevalencia de S. pyogenes na superficie e no nucleo foi de (84,6% vs 70%) e (50,0% vs 25,0%) em criancas de maior faixa etaria e criancas mais novas, respectivamente. Klebsiella spp. (6,6%, 2,2%), Proteus (4,4%, 4,4%) e Pseudomonas (4,4 %, 1,1%) cresceram nas superficies e nucleos, respectivamente. CONCLUSAO: As superficies amigdalianas tinham mais estreptococos e estreptococos hemoliticos do que seus nucleos. Criancas mais velhas tiveram mais estreptococos beta-hemoliticos, e sao altamente colonizadoras de S. pyogenes. Sugerimos estudos que investiguem os mecanismos de aderencia estreptococica em criancas de Trinidad.