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Dive into the research topics where Isabelle Auby is active.

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Featured researches published by Isabelle Auby.


Ecological Modelling | 2003

Modelling seasonal dynamics of biomasses and nitrogen contents in a seagrass meadow (Zostera noltii Hornem.): application to the Thau lagoon (French Mediterranean coast)

Martin Plus; Annie Chapelle; Alain Menesguen; Jean-Marc Deslous-Paoli; Isabelle Auby

Abstract Anumerical deterministic model for a seagrass ecosystem (Zostera noltii meadows) has been developed for the Thau lagoon. It involves both above- and belowground seagrass biomasses, nitrogen quotas and epiphytes. Driving variables are light intensity, wind speed, rain data and water temperature. This seagrass model has been coupled to another biological model in order to simulate the relative contributions of each primary producer to: (i) the total ecosystem production, (ii) the impact on inorganic nitrogen and (iii) the fluxes towards the detritus compartment. As a first step in the modelling of seagrass beds in the Thau lagoon, the model has a vertical structure based on four boxes (a water box on top of three sediment boxes) and the horizontal variability is neglected until now. This simple box structure is nevertheless representative for the shallow depth Z. noltii meadows, spread over large areas at the lagoon periphery. After calibration, simulation results have been compared with in situ measurements and have shown that the model is able to reproduce the general pattern of biomasses and nitrogen contents seasonal dynamics. Moreover, results show that, in such shallow ecosystems, seagrasses remain the most productive compartment when compared with epiphytes or phytoplankton productions, and that seagrasses, probably due to their ability in taking nutrients in the sediment, have a lower impact on nutrient concentration in the water column than the phytoplankton. Furthermore, in spite of active mechanisms of internal nitrogen redistribution and reclamation, the occurrence of a nitrogen limitation of the seagrass growth during summer, already mentioned in the literature, have also been pointed out by the model. Finally, simulations seems to point out that epiphytes and phytoplankton could compete for nitrogen in the water column, while a competition for light resources seems to be more likely between epiphytes and seagrasses.


Journal of Experimental Marine Biology and Ecology | 2001

Factors influencing primary production of seagrass beds (Zostera noltii Hornem.) in the Thau lagoon (French Mediterranean coast)

Martin Plus; Jean-Marc Deslous-Paoli; Isabelle Auby; Françoise Dagault

The primary production and the respiration of Zostera noltii beds in the Thau lagoon were studied by means of the benthic bell jar technique. Concurrently, environmental data (temperature, light and nutrients) as well as morphological data of seagrass meadows (leaf width and height, density of shoots, above/below-ground biomass ratio) were collected with the purpose of explaining most of the observed variations in metabolism. Seagrass plus epiphyte respiration rates were influenced mainly by the water temperature, showing a typical exponential response to an increase in temperature. Surprisingly, measurements of production rates were not related to incoming light intensities recorded at the seagrass canopy level. An equation frequently used for terrestrial standing crops, involving the leaf area index (LAI) and the characteristics of the canopy architecture (parameter K, depending on leaves optical and geometrical properties), was applied to the seagrass ecosystem in order to estimate the light energy actually available for the plants, i.e. the light intercepted by the seagrass canopy (Q(abs)). Linear relationships were then validated between gross production rates and calculated Q(abs) for Z. noltii beds, and the best fits were obtained with K values nearing 0.6, confirming the similarities between terrestrial graminaceae and seagrasses. A linear regression model for primary production is proposed, involving the calculated Q(abs), the water temperature and the leaf nutrient content.


Biogeochemistry | 2012

Nutrient export to an Eastern Atlantic coastal zone: first modeling and nitrogen mass balance

Mathieu Canton; Pierre Anschutz; Alexandra Coynel; Pierre Polsenaere; Isabelle Auby; Dominique Poirier

We have studied 15 catchments supplying freshwater to a French Atlantic coastal lagoon, where increase in nitrogen loads due to agriculture is supposed to have destabilized the ecosystem in the last decades. The catchment is a lowland composed of Pleistocene sands with an average slope of 0.25%. To study the nutrient export in relation to land-use surface waters were sampled bi-weekly between October 2006 and January 2009 and land-use was established by plane photographs and Geographic Information System (GIS). Cultivated pine forests represent more than 80% of the total surface and 7% of the catchment area has been deforested recently. Significant areas of some catchments are used for maize crop. Housing is confined to the coastal zone. Maize and forest crop give a robust signature in terms of nitrate export. In view of modeling the nutrient fluxes, we have established the mean export rate for every land-use: forested parcels, deforested parcels, cultivated surfaces, and housing areas export 45, 93, 2850, and 61xa0kg N-nitrate km−2xa0year−1, respectively. Exports of ammonium, dissolved organic N (DON), and dissolved inorganic P (DIP) could not be related to land use. The mean export is 13, 100, and 0.57xa0kgxa0km−2xa0year−1 for N-ammonium, DON, and DIP, respectively. The modeling of nitrogen flux is in good agreement with our measures for the largest catchment, which supplies about 90% of the total continental DIN flux. However, small catchments are more dynamic due to hydrological conditions and the model is less accurate. This work has permitted to complete and unify scattered studies about nutrient cycling in this area. Thus we have established and compared the nitrogen budget of cornfields and cultivated pine forest. We have emphasized that (i) fertilizer use should be reduced in cornfields because they stock between 200 and 6400xa0kg DIN km−2 year−1, and (ii) the nitrogen budget in pine forest mostly depends on tree harvesting and symbiotic N-fixation, which is poorly constrained. Export of N by rivers represents a small contribution to the N budget of soils.


Frontiers in Plant Science | 2018

Latitudinal Patterns in European Seagrass Carbon Reserves: Influence of Seasonal Fluctuations versus Short-Term Stress and Disturbance Events

Laura M. Soissons; Eeke P. Haanstra; Marieke M. van Katwijk; Ragnhild Asmus; Isabelle Auby; Laurent Barillé; Fernando G. Brun; P.G. Cardoso; Nicolas Desroy; Jérôme Fournier; Florian Ganthy; Joxe-Mikel Garmendia; Laurent Godet; Tiago F. Grilo; Petra Kadel; Bárbara Ondiviela; G. Peralta; Araceli Puente; María Recio; Loic Rigouin; Mireia Valle; Peter M. J. Herman; Tjeerd J. Bouma

Seagrass meadows form highly productive and valuable ecosystems in the marine environment. Throughout the year, seagrass meadows are exposed to abiotic and biotic variations linked to (i) seasonal fluctuations, (ii) short-term stress events such as, e.g., local nutrient enrichment, and (iii) small-scale disturbances such as, e.g., biomass removal by grazing. We hypothesized that short-term stress events and small-scale disturbances may affect seagrass chance for survival in temperate latitudes. To test this hypothesis we focused on seagrass carbon reserves in the form of starch stored seasonally in rhizomes, as these have been defined as a good indicator for winter survival. Twelve Zostera noltei meadows were monitored along a latitudinal gradient in Western Europe to firstly assess the seasonal change of their rhizomal starch content. Secondly, we tested the effects of nutrient enrichment and/or biomass removal on the corresponding starch content by using a short-term manipulative field experiment at a single latitude in the Netherlands. At the end of the growing season, we observed a weak but significant linear increase of starch content along the latitudinal gradient from south to north. This agrees with the contention that such reserves are essential for regrowth after winter, which is more severe in the north. In addition, we also observed a weak but significant positive relationship between starch content at the beginning of the growing season and past winter temperatures. This implies a lower regrowth potential after severe winters, due to diminished starch content at the beginning of the growing season. Short-term stress and disturbances may intensify these patterns, because our manipulative experiments show that when nutrient enrichment and biomass loss co-occurred at the end of the growing season, Z. noltei starch content declined. In temperate zones, the capacity of seagrasses to accumulate carbon reserves is expected to determine carbon-based regrowth after winter. Therefore, processes affecting those reserves might affect seagrass resilience. With increasing human pressure on coastal systems, short- and small-scale stress events are expected to become more frequent, threatening the resilience of seagrass ecosystems, particularly at higher latitudes, where populations tend to have an annual cycle highly dependent on their storage capacity.


Environmental Pollution | 2017

Toxicity effects of an environmental realistic herbicide mixture on the seagrass Zostera noltei

Noël J. Diepens; Evelyne Buffan-Dubau; Hélène Budzinski; Jean Kallerhoff; Georges Merlina; Jérôme Silvestre; Isabelle Auby; Nathalie Tapie; Arnaud Elger

Worldwide seagrass declines have been observed due to multiple stressors. One of them is the mixture of pesticides used in intensive agriculture and boat antifouling paints in coastal areas. Effects of mixture toxicity are complex and poorly understood. However, consideration of mixture toxicity is more realistic and ecologically relevant for environmental risk assessment (ERA). The first aim of this study was to determine short-term effects of realistic herbicide mixture exposure on physiological endpoints of Zostera noltei. The second aim was to assess the environmental risks of this mixture, by comparing the results to previously published data. Z.xa0noltei was exposed to a mixture of four herbicides: atrazine, diuron, irgarol and S-metolachlor, simulating the composition of typical cocktail of contaminants in the Arcachon bay (Atlantic coast, France). Three stress biomarkers were measured: enzymatic activity of glutathione reductase, effective quantum yield (EQY) and photosynthetic pigment composition after 6, 24 and 96xa0h. Short term exposure to realistic herbicide mixtures affected EQY, with almost 100% inhibition for the two highest concentrations, and photosynthetic pigments. Effect on pigment composition was detected after 6xa0h with a no observed effect concentration (NOEC) of 1xa0μg/L total mixture concentration. The lowest EQY effect concentration at 10% (EC10) (2xa0μg/L) and pigment composition NOEC with an assessment factor of 10 were above the maximal field concentrations along the French Atlantic coast, suggesting that there are no potential short term adverse effects of this particular mixture on Z.xa0noltei. However, chronic effects on photosynthesis may lead to reduced energy reserves, which could thus lead to effects at whole plant and population level. Understanding the consequences of chemical mixtures could help to improve ERA and enhance management strategies to prevent further declines of seagrass meadows worldwide.


Oecologia | 2016

Pollen limitation may be a common Allee effect in marine hydrophilous plants: implications for decline and recovery in seagrasses

B.I. van Tussenbroek; Laura M. Soissons; Tjeerd J. Bouma; Ragnhild Asmus; Isabelle Auby; Fernando G. Brun; P.G. Cardoso; Nicolas Desroy; Jérôme Fournier; Florian Ganthy; Joxe Mikel Garmendia; Laurent Godet; Tiago F. Grilo; Petra Kadel; Bárbara Ondiviela; G. Peralta; María Recio; Mireia Valle; T. van der Heide; M.M. van Katwijk

Pollen limitation may be an important factor in accelerated decline of sparse or fragmented populations. Little is known whether hydrophilous plants (pollen transport by water) suffer from an Allee effect due to pollen limitation or not. Hydrophilous pollination is a typical trait of marine angiosperms or seagrasses. Although seagrass flowers usually have high pollen production, floral densities are highly variable. We evaluated pollen limitation for intertidal populations of the seagrass Zostera noltei in The Netherlands and found a significant positive relation between flowering spathe density and fruit-set, which was suboptimal at <1200 flowering spathes m−2 (corresponding to <600 reproductive shoots m−2). A fragmented population had ≈35xa0% lower fruit-set at similar reproductive density than a continuous population. 75xa0% of all European populations studied over a large latitudinal gradient had flowering spathe densities below that required for optimal fruit-set, particularly in Southern countries. Literature review of the reproductive output of hydrophilous pollinated plants revealed that seed- or fruit-set of marine hydrophilous plants is generally low, as compared to hydrophilous freshwater and wind-pollinated plants. We conclude that pollen limitation as found in Z. noltei may be a common Allee effect for seagrasses, potentially accelerating decline and impairing recovery even after environmental conditions have improved substantially.


Marine Pollution Bulletin | 2017

Can pesticides, copper and seasonal water temperature explain the seagrass Zostera noltei decline in the Arcachon bay?

Perrine Gamain; Agnès Feurtet-Mazel; Régine Maury-Brachet; Isabelle Auby; Fabien Pierron; Angel Belles; Hélène Budzinski; Guillemine Daffe; Patrice Gonzalez

Dwarf eelgrasses (Zostera noltei) populations have decreased since 2005 in Arcachon Bay (southwest France). Various stressors have been pointed out, however the role of xenobiotics like pesticides or copper (Cu) and of parameters like water temperature warming have not yet been explored. To determine their impact, Z. noltei individuals were collected in a pollution-free site and transferred to the laboratory in seawater microcosms. This dwarf eelgrass was exposed to a pesticide cocktail and copper, alone or simultaneously, at temperatures (10°C, 20°C, 28°C) representative of different seasons. After a two-week contamination, leaf growth, leaf bioaccumulation of Cu, and differential expression of target genes were studied. Eelgrasses bioaccumulated Cu regardless of the temperature, with reduced efficiency in the presence of the Cu and pesticide cocktail at the two higher temperatures. High temperature also exacerbated the effect of contaminants, leading to growth inhibition and differential gene expression. Mitochondrial activity was strongly impacted and higher mortality rates occurred. Experimental results have been confirmed during field survey. This is the first report on the impacts on Z. noltei of pesticides and Cu associate to temperature.


bioRxiv | 2017

Weak interactions between groups and physical drivers of community dynamics in coastal phytoplankton

Frédéric Barraquand; Coralie Picoche; Daniele Maurer; Laure Carassou; Isabelle Auby

Phytoplanktonic communities maintain a high diversity in a seemingly homogeneous environment, competing for the same set of resources. Many theories have been proposed to explain this coexistence despite likely competition, such as contrasted responses to temporal environmental variation. However, theory has developed at a faster pace than its empirical evaluation using field data, that requires to infer biotic and abiotic drivers of community dynamics from observational time series. Here, we combine autoregressive models with a data set spanning more than 20 years of biweekly plankton counts and abiotic variables, including nutrients and physical variables. By comparing models dominated by nutrients or physical variables (hydrodynamics and climate), we first explore which abiotic factors contribute more to phytoplankton growth and decline. We find that physical drivers - such as irradiance, wind, and salinity - explain some of the variability in abundances unexplained by biotic interactions. In contrast, responses to nutrients explain less of phytoplankton variability. Concerning biotic drivers of community dynamics, multivariate autoregressive models reveal that competition between different groups (at the genus level for most) has a much weaker effect on population growth rates than competition within a group. In fact, the few biotic interactions between genera that are detected are frequently positive. Hence, our system is unlikely to be best represented as a set of competitors whose differing responses to fluctuating environments allow coexistence, as in “paradox of the plankton” models with a storage effect or a relative nonlinearity of competition. Coexistence is more likely to result from stabilizing niche differences, manifested through high intragroup density-dependence. Competition between planktonic groups and nutrients are often invoked as drivers of phytoplankton dynamics; our findings suggest instead that more attention should be given to the physical structure of the environment and natural enemies, for coastal phytoplankton at least.


Science of The Total Environment | 2007

In situ growth potential of the subtidal part of green tide forming Ulva spp. stocks

Michel Merceron; Virginie Antoine; Isabelle Auby; Philippe Morand


Marine Chemistry | 2008

Role of tidal pumping on nutrient cycling in a temperate lagoon (Arcachon Bay, France)

Jonathan Deborde; Pierre Anschutz; Isabelle Auby; Corine Glé; Marc-Vincent Commarieu; Daniele Maurer; Pascal Lecroart; Gwenaël Abril

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Jérôme Fournier

Centre national de la recherche scientifique

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