Isao Nishiumi

Abundance of birds in Fukushima as judged from Chernobyl

The effects of radiation on abundance of common birds in Fukushima can be assessed from the effects of radiation in Chernobyl. Abundance of birds was negatively related to radiation, with a significant difference between Fukushima and Chernobyl. Analysis of 14 species common to the two areas revealed a negative effect of radiation on abundance, differing between areas and species. The relationship between abundance and radiation was more strongly negative in Fukushima than in Chernobyl for the same 14 species, demonstrating a negative consequence of radiation for birds immediately after the accident on 11 March 2011 during the main breeding season in March-July, when individuals work close to their maximum sustainable level.

Host-Feeding Habits of Culex pipiens and Aedes albopictus (Diptera: Culicidae) Collected at the Urban and Suburban Residential Areas of Japan

ABSTRACT To evaluate the vectorial capacity of mosquitoes for viruses in Japan, the host-feeding habits of the mosquitoes were analyzed by sequencing polymerase chain reaction-amplified fragments of the cytochrome b and 16S ribosomal RNA regions of the mitochondrial DNA of 516 mosquitoes of 15 species from seven genera that were collected from residential areas during 2003–2006. Culex pipiens L. and Aedes albopictus Skuse were the most commonly collected species in urban and suburban residential areas. Anautogenous Culex pipiens pallens Coquillett was distinguished from the autogenous Cx. pipiens form molestus Forskal using a polymerase chain reaction-based identification method. Both Cx. p. pollens and Cx. p. form molestus exhibited similar host-feeding habits, broadly preferring avian (50.0 and 42.5% of avian, respectively) and mammalian (38.6 and 45.0% of avian, respectively) hosts, such as tree sparrows, ducks, and humans. Conversely, Ae. albopictus exhibited a highly mammalophilic and anthropophilic feeding pattern, with 84.2% feeding on mammalian hosts and 68.5% of these on humans. We concluded that in Japan, Cx. pipiens might play a significant role in the avian-to-mammal transmission of viruses, such as West Nile virus, whereas Ae. albopictus might play a role in the human-human transmission of dengue and Chikungunya viruses.

Old divergences in a boreal bird supports long-term survival through the Ice Ages

BackgroundUnlike northern Europe and most of northern North America, the Eastern Palearctic and the northwesternmost tip of North America are believed to have been almost unglaciated during the Quarternary glacial periods. This could have facilitated long-term survival of many organisms in that area. To evaluate this, we studied the phylogeography in east Asia and Alaska of a boreal migratory passerine bird, the Arctic Warbler Phylloscopus borealis, and compared our results with published data on especially North American species.ResultsIn a sample of 113 individuals from 18 populations we identified 42 haplotypes of the mitochondrial cytochrome b gene, which separated into three clades: A - Alaska and mainland Eurasia (except Kamchatka); B - Kamchatka, Sakhalin and Hokkaido; and C - Honshu, Shikoku and Kyushu (i.e. Japan except Hokkaido). The oldest split among these clades, between A/B and C, is estimated to have taken place sometime between the mid Pliocene and early Pleistocene, and the second divergence, between clades A and B, in the early to mid Pleistocene. Within all of the three main clades, there are signs of population expansion.ConclusionsThe Arctic Warbler separated into three main clades in close succession around the Pliocene/Pleistocene border, with the two northern clades diverging last. All three clades probably experienced population bottlenecks during the Pleistocene as a result of range shifts and contractions, but nevertheless survived and maintained their integrities. Several other clades of Northeastern Palearctic birds are noted to have diversified during the Pliocene. In contrast, avian species or phylogroups presently occupying formerly glaciated North American ground are generally younger. The differences between these regions could be due to slower speciation rates in the Eastern Palearctic due to less fragmentation of forest habitats during glacial periods, or to longer survival of Eastern Palearctic clades as a result of less severe conditions in that region compared to northern North America. Several other Palearctic organisms show concordant biogeographical patterns to that of the Arctic Warbler, indicating common causes of their diversifications.

DNA barcoding reveals 24 distinct lineages as cryptic bird species candidates in and around the Japanese Archipelago

DNA barcoding using a partial region (648 bp) of the cytochrome c oxidase I (COI) gene is a powerful tool for species identification and has revealed many cryptic species in various animal taxa. In birds, cryptic species are likely to occur in insular regions like the Japanese Archipelago due to the prevention of gene flow by sea barriers. Using COI sequences of 234 of the 251 Japanese‐breeding bird species, we established a DNA barcoding library for species identification and estimated the number of cryptic species candidates. A total of 226 species (96.6%) had unique COI sequences with large genetic divergence among the closest species based on neighbour‐joining clusters, genetic distance criterion and diagnostic substitutions. Eleven cryptic species candidates were detected, with distinct intraspecific deep genetic divergences, nine lineages of which were geographically separated by islands and straits within the Japanese Archipelago. To identify Japan‐specific cryptic species from trans‐Paleartic birds, we investigated the genetic structure of 142 shared species over an extended region covering Japan and Eurasia; 19 of these species formed two or more clades with high bootstrap values. Excluding six duplicated species from the total of 11 species within the Japanese Archipelago and 19 trans‐Paleartic species, we identified 24 species that were cryptic species candidates within and surrounding the Japanese Archipelago. Repeated sea level changes during the glacial and interglacial periods may be responsible for the deep genetic divergences of Japanese birds in this insular region, which has led to inconsistencies in traditional taxonomies based on morphology.

Ecological differences in response of bird species to radioactivity from Chernobyl and Fukushima

Organisms differ in their susceptibility to ionizing radiation, although the ecological basis for such differences remain poorly understood. We hypothesized that ecological characteristics such as body size, diet, migration and pigments of plumage would predict the impact of radiation on abundance through effects on relative food consumption rates, free radicals and antioxidants. We made 2,398 breeding bird censuses and quantified the impact of radiation on abundance at Chernobyl and Fukushima providing statistical replication, but also analyses of interaction effects. The impact of radiation on abundance of birds was stronger at Fukushima than at Chernobyl. Species with small body size and hence relatively high food consumption rates were more negatively impacted. Secondary consumers showed stronger negative effects of radiation on abundance than herbivores, especially at Fukushima. There was no main effect of migration, but migrants were more negatively impacted at Chernobyl, while residents were more negatively impacted at Fukushima. Carotenoid and pheomelanin plumage pigments associated with antioxidant status showed stronger negative effects, especially at Chernobyl compared to Fukushima, while eumelanic coloration which is not related to antioxidant status did not show such an effect. These differences between Chernobyl and Fukuskima may reflect differences in duration of exposure, differences in radioactive isotopes and differences in accumulation of mutations.

Geographic variation in bird songs: examination of the effects of sympatric related species on the acoustic structure of songs

Birdsong evolution has influenced by various ecological and social factors. When related species that sing similar songs coexist, the acoustic properties of the songs of one or both species may shift, and the songs may diverge. We investigated geographic variation in the songs of the Japanese tit (Parus minor) and the varied tit (Poecile varius) in the Ryukyu Archipelago, Japan, whose islands harbor either one or both species. The songs of the two species exhibited similar structure, but acoustic measurements differed between them. For example, varied tits sang songs at higher frequency than Japanese tits did. The songs of both species varied geographically. At sites with higher relative densities of varied tits, Japanese tits sang lower frequency songs, indicating that in areas of coexistence, Japanese tits sang songs that had acoustically diverged from those of varied tits. Song variation in varied tits was not related to sympatry with Japanese tits. These asymmetric results suggest that the subordinate Japanese tit modified the acoustic characteristics of its song to avoid harassment by the dominant varied tit. We observed no effects of genetic divergence or local intraspecific density on Japanese tit or varied tit songs. This study used geographic variation to examine hypotheses of song evolution, and the results highlight the importance of character displacement.

Phylogenetic Relationship And Song Differences Between Closely Related Bush Warblers (Cettia seebohmi And C. diphone)

Abstract We investigated the phylogenetic relationship and differences in the song structure between the Philippine Bush Warbler (Cettia seebohmi) and the Japanese Bush Warbler (C. diphone). We compared complete sequences of the mitochondrial cyt-b gene of C. seebohmi to those of other Cettia taxa from GenBank and found C. seebohmi formed a monophyletic group with C. haddeni and C. diphone. The phylogenetic tree also suggests that C. seebohmi is more closely related to C. haddeni than to C. diphone although this was not strongly supported due to the low bootstrap values. The estimated nucleotide differences between C. seebohmi and C. haddeni (4.37%), and between C. seebohmi and C. diphone (3.87–4.37%) were larger than the inter-subspecific difference between C. diphone borealis and C. d. cantans (2.44%). Cettia seebohmi, C. haddeni, and C. diphone diverged prior to the subspecies divergences of C. diphone. The basic structure of songs was similar in C. seebohmi and C. diphone; all songs consisted of pure monotone whistles followed by variably modulated warbles. However, sonagraphic parameters showed statistically significant differences between species. It is reasonable to regard C. seebohmi and C. diphone as separate species.

Distribution of Two Distinctive Mitochondrial DNA Lineages of the Japanese Robin Luscinia akahige Across Its Breeding Range Around the Japanese Islands

The genetic structure of the Japanese robin Luscinia akahige across its breeding range was investigated based on mitochondrial cytochrome b and a control region sequence to reveal the phylogeographic history of this species, which is endemic to the islands around Japan. We obtained the 2,230-bp combined sequences of 77 robins from eight locations and identified 33 haplotypes. Of these, two phylogenetic clades, Ak and Tn, were evident in both maximum-likelihood and Bayesian analyses. Clade Ak was found throughout the range, whereas clade Tn was endemic to the Izu Islands, resulting in the mixture of both clades at this location. These two mtDNA lineages were inferred to have originated in different refugia during the mid-Pleistocene glacial period, probably one in southwestern Japan and the other in the Izu Islands. The population in the Izu Islands has been described as an independent subspecies, tanensis, and is known to be distinguished phenotypically from the nominotypical akahige. Therefore, the distribution pattern of the two mtDNA lineages may be better explained by past introgression of mitochondrial DNA rather than by assuming continuous hybridization with immigrants from the mainland. Future nuclear DNA analysis is needed to evaluate the effect of this introgression event on the genetic bases of the current Izu Islands population. Within clade Ak, the haplotype distribution pattern was inferred to be primarily a result of contiguous range expansion, reflecting the history of both range and population expansion after the last glacial period, with some effects of allopatric fragmentation in its southwestern range.

Origin of Japanese White-Eyes and Brown-Eared Bulbuls on the Volcano Islands

The Ogasawara Archipelago comprises two groups of oceanic islands: the Bonin Islands, formed in the Paleogene, and the Volcano Islands, formed in the Quaternary. These groups are located within a moderate distance (ca. 160–270 km) of one another; thus, most land bird species are not distinguished as different subspecies. Two land birds, however, show unusual distribution. The Japanese white-eyes Zosterops japonicus originally inhabited only the Volcano Islands, but has been introduced to the Bonin Islands. The brown-eared bulbuls Hypsipetes amaurotis are distributed as a different subspecies. We investigated their genetic differences and divergences in the Ogasawara Archipelago using mitochondria DNA. The Volcano population of white-eyes had four endemic haplotypes that were divergent from one another, except for the Bonin population, which shared three haplotypes with the Volcano, Izu, and Ryukyu Islands and did not have any endemic haplotype. This is the first genetic suggestion that the Bonin population is a hybrid of introduced populations. With respect to bulbuls, the Volcano and Bonin Islands each had a single endemic haplotype. The Volcano haplotype is closest to a haplotype shared with Izu, the Japanese mainland, Daito and Ryukyu, whereas the Bonin haplotype is closest to one endemic to the south Ryukyu Islands. This indicates that the sources of the two bulbul populations can be geologically and temporally distinguished. The populations of the two species in the Ogasawara Archipelago are irreplaceable, owing to their genetic differences and should be regarded as evolutionarily significant units. In order to prevent introgression between the two populations, we must restrict interisland transfers.

A breeding record of the Ryukyu Scops Owl on Okinoshima, in northernmost Fukuoka, Japan

Abstract n A nest of the Ryukyu Scops Owl Otus elegans was found on Okinoshima (Okino Island), Fukuoka Prefecture, Japan (34.24°N, 130.10°E), in the Tsushima Strait, on 28 July 2013. The breeding pair and their three owlets were caught and their identity confirmed genetically using the BOLD System for COI in the mitochondrial genome. Their calls and external morphological measurements also accorded with what is known of the species. We estimated that at least 23 territorial males inhabit the Island. Okinoshima lies 490 km beyond the previously known northern limit of the species distribution.