J. A. Basarab

Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency

Linkage of rumen microbial structure to host phenotypical traits may enhance the understanding of host-microbial interactions in livestock species. This study used culture-independent PCR-denaturing gradient gel electrophoresis (PCR-DGGE) to investigate the microbial profiles in the rumen of cattle differing in feed efficiency. The analysis of detectable bacterial PCR-DGGE profiles showed that the profiles generated from efficient steers clustered together and were clearly separated from those obtained from inefficient steers, indicating that specific bacterial groups may only inhabit in efficient steers. In addition, the bacterial profiles were more likely clustered within a certain breed, suggesting that host genetics may play an important role in rumen microbial structure. The correlations between the concentrations of volatile fatty acids and feed efficiency traits were also observed. Significantly higher concentrations of butyrate (P < 0.001) and valerate (P = 0.006) were detected in the efficient steers. Our results revealed potential associations between the detectable rumen microbiota and its fermentation parameters with the feed efficiency of cattle.

Relationships between progeny residual feed intake and dam productivity traits

Two hundred and twenty-two yearling calves and their dams were used to examine the phenotypic (rp) relationships between progeny residual feed intake (RFI) and maternal productivity across 10 production cycles. Progeny RFI ranged from -3.95 to +2.72 kg as fed d-1 (SD = 0.94), while RFI adjusted for off-test backfat thickness (RFIadj), ranged from -2.48 to +1.53 kg as fed d-1 (SD = 0.88). Progeny RFI and RFIadj were unrelated to on-test age, body weight, growth rate, and ultrasound longissimus thoracis area and positively related to feed intake (rp = 0.51 to 0.53; P < 0.001), feed to gain ratio (rp = 0.44 to 0.46; P < 0.001), feeding behaviour traits (rp = 0.29 to 0.36; P < 0.001) and cow RFI (rp = 0.30, P < 0.05). Progeny RFI was positively related to measures of body fat (rp = 0.21 to 0.27; P < 0.05), but these relationships disappeared when RFI was adjusted for off-test backfat thickness. Cows that had produced LOW (≤ 0.5 SD), MEDIUM (± 0.5 SD) or HIGH (≥ 0.5 SD) RFIadj progeny were similar in pregnancy...

CONJUGATED LINOLEIC ACID-ENRICHED BEEF PRODUCTION

Canadian beef consumption is approximately 31 kg per annum, or a third of all meats consumed. Beef is a nutrient-rich food, providing good quality protein, vitamins B-6 and B-12, niacin, iron, and zinc. However, animal fats have gained the reputation of being less healthy. The identification of the anticarcinogenic effects of beef extracts due to the presence of conjugated linoleic acid (CLA) has heightened interest in increasing the amount of CLA deposited in beef. Beef cattle produce CLA and deposit these compounds in the meat; thus, beef consumers can receive bioformed CLA. Beef contains both of the bioactive CLA isomers, namely, cis-9, trans-11 and trans-10, cis-12. The relative content of these CLA isomers in beef depends on the feeds consumed by the animals during production. Feeding cattle linoleic acid-rich oils for extended periods of time increases the CLA content of beef. Depending on the type and relative maturity of the pasture, beef from pasture-fed cattle may have a higher CLA content than beef from grain- or silage-fed cattle. In feedlot animals fed high-grain diets, inclusion of dietary oil along with hay during both the growth and finishing phases led to an increase in CLA content from 2.8 to 14 mg/g beef fat, which would provide 77 mg CLA in an 85-g serving of beef. The CLAs appear to be concentrated in intramuscular and subcutaneous fat of beef cattle, with the CLA trans-10, cis-12 isomer being greater in the subcutaneous fat.

Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development

BackgroundMicroRNAs (miRNAs), a family of small non-coding RNA molecules, appear to regulate animal lipid metabolism and preadipocyte conversion to form lipid-assimilating adipocytes (i.e. adipogenesis). However, no miRNA to date has been reported to modulate adipogenesis and lipid deposition in beef cattle.ResultsThe expression patterns of 89 miRNAs including four bovine specific miRNAs in subcutaneous adipose tissues from three groups of crossbred steers differing in backfat thickness were compared using qRT-PCR analysis. Eighty-six miRNAs were detectable in all samples, with 42 miRNAs differing among crossbreds (P < 0.05) and 15 miRNAs differentially expressed between tissues with high and low backfat thickness (P < 0.05). The expression levels of 18 miRNAs were correlated with backfat thickness (P < 0.05). The miRNA most differentially expressed and the most strongly associated with backfat thickness was miR-378, with a 1.99-fold increase in high backfat thickness tissues (r = 0.72).ConclusionsMiRNA expression patterns differed significantly in response to host genetic components. Approximately 20% of the miRNAs in this study were identified as being correlated with backfat thickness. This result suggests that miRNAs may play a regulatory role in white adipose tissue development in beef animals.

Feed efficiency differences and reranking in beef steers fed grower and finisher diets

This 3-yr study used 490 steers to determine whether feedlot steers changed their feed efficiency (FE) ranking when fed a grower diet, then a finisher diet. The steers were crossbreds and were between 5 to 7 mo of age. There were 2 feeding periods each year. Within each year, approximately 90 steers had their diet switched from a grower to a finisher diet (feed-swap group), whereas another 90 steers were fed either the grower (grower-fed group) or the finisher (finisher-fed group) diet throughout the feeding trial. Each feeding test lasted for a minimum of 10 wk, and all steers were fed ad libitum. Individual animal feed intakes were collected using the GrowSafe feeding system, and BW were measured every 2 wk. Residual feed intake (RFI), G:F, and Kleiber ratio (KR) were computed at the end of each feeding period. For each measure of efficiency, animals were classified as low, medium, or high based on 0.5 SD from the mean. The majority of steers did not maintain the previous efficiency class in the second period. Approximately 58, 51, and 51% of steers in the feed-swap group, finisher-fed group, and the grower-fed group, respectively, changed their RFI measure by 0.5 SD. A low rank correlation occurred in all test groups but was less in the feed-swap group. Spearman rank correlations between the 2 feeding periods in the feed-swap group were 0.33, 0.20, and 0.31 for RFI, G:F, and KR, respectively. Classifications based on G:F and KR showed that a greater number of steers (P < 0.05) in the feed-swap group did not maintain their FE class from 1 feeding regimen to the other, whereas classification based on RFI did not show any difference (P > 0.05) between the proportions of individuals that changed or maintained their FE class. In the groups without a feed-swap, there was no difference (P > 0.05) in the proportion of steers that changed or maintained the same FE class for all FE measures. Our results suggest that diet type and feeding period affect the FE ranking in beef steers. A feedlot diet is ideal for evaluating the FE potential of steers for feedlot profitability; however, we suggest that tests involving less dense diets should be examined in an effort to understand the relationships between FE and feeder profitability.

Alternative fall and winter feeding systems for spring calving beef cows

This study evaluated the effects of early (EW) and late (LW) weaning on calf post-weaning growth performance and carcass characteristics. It also quantified the effects of EW and LW in combination with three winter feeding strategies on cow growth, reproductive performance and cost of production. EW calves were weaned in late August, while LW calves were weaned 56 d later in late October. The three cow winter feeding strategies were: (1) traditional (TD), or straw fed ad libitum and barley (Hordeum vulgare L.) silage fed every day; (2) alternate day (AD), or straw fed ad libitum and equivalent amounts of barley silage fed every second day (AD); and (3) swath graze (SG), or swath grazing whole-plant barley, cut in the soft dough stage. The study was conducted over three production cycles (1997/1998, 1998/1999 and 1999/2000). EW calves weighing 213 kg and fed a backgrounding diet (82% barley silage: 18% concentrate) for 56 d, grew 0.36 kg d-1 (EW = 0.61 ± 0.02 kg d-1; LW = 0.97 ± 0.02 kg d-1; P < 0.001) slo...

Effects of vitamin E and flaxseed on rumen-derived fatty acid intermediates in beef intramuscular fat☆

To elucidate the effects of dietary vitamin E with or without flaxseed on beef fatty acid composition, 80 feedlot steers were fed 4 diets: Control-E (451 IU dl-α-tocopheryl acetate/head/day), Control+E (1051 IU dl-α-tocopheryl acetate/head/day), Flax-E (10% ground) and Flax+E. Vitamin E had no effect on animal growth or carcass weight (p>0.05), while flaxseed-fed steers had greater average daily gain (p=0.007), final live weight (p=0.005) and heavier carcasses (p=0.012). Feeding flaxseed increased the total n-3 fatty acid content of beef and this response was further accentuated by the inclusion of high levels of vitamin E in the diet. Feeding flax increased levels of some 18:3n-3 partial hydrogenation products including c15- and t13/14-18:1 and several 18:2 isomers (p<0.001) but decreased t10-18:1 (p<0.001). Vitamin E enhanced intramuscular levels of 18:3n-3 and its biohydrogenation products leading to greater accumulations of total n-3 fatty acids in lean ground beef. The consequences of increasing the concentrations of partially hydrogenated products on human health have yet to be investigated.

Effects of feeding flaxseed or sunflower-seed in high-forage diets on beef production, quality and fatty acid composition.

Yearling steers were fed 70:30 forage:concentrate diets for 205 d, with either grass hay (GH) or red clover silage (RC) as the forage source, and concentrates containing either sunflower-seed (SS) or flaxseed (FS), each providing 5.4% oil to diets. Feeding diets containing SS versus FS significantly improved growth and carcass attributes (P<0.05), significantly reduced meat off-flavor intensity (P<0.05), and significantly increased intramuscular proportions of vaccenic (t11-18:1), rumenic (c9,t11-CLA) and n-6 fatty acids (FA, P<0.05). Feeding diets containing FS versus SS produced significantly darker and redder meat with greater proportions of atypical dienes (P<0.05). A significant forage × oilseed type interaction (P<0.05) was found for n-3 FA, α-linolenic acid, and conjugated linolenic acid, with their greatest intramuscular proportions found when feeding the RC-FS diet. Feeding GH versus RC also significantly improved growth and carcass attributes, sensory tenderness (P<0.05) and significantly influenced intramuscular FA composition (P<0.05), but overall, forage effects on FA profiles were limited compared to effects of oilseed.

Evidence of residual feed intake reranking in crossbred replacement heifers

The objective of the study was to examine whether residual feed intake (RFI) reranking exists between 2 consecutive periods in replacement heifers fed the same diet. The study collected feed intake and BW data from 190 crossbred heifers over a 3-yr period (61 in 2007, 68 in 2008, and 61 in 2009) during the winter-spring season. The heifers were fed a roughage-based diet (90% barley silage and 10% rolled barley grain) throughout the feeding trial, which was broken down into 2 feeding periods with ADG of 0.94 and 0.90 kg•d(-1) in the first and second periods, respectively. The RFI was calculated for the entire period using different models, which included ADG, mid-metabolic BW, body composition, and feeding activity. Gain:feed ratio and Kleiber ratio were also calculated. Rank correlations among the RFI calculated from different models were obtained, as well as rank correlations between the 2 feeding periods for the feed efficiency measures. Including body composition and feeding activity only improved the R(2) by 1 to 5%. The rank correlations among the different models were high (90 to 95%) for RFI calculated for the entire feeding period. However, the RFI calculated within the second feeding period had greater rank correlation than the RFI calculated from the entire feeding period. Compared with G:F and Kleiber ratio, RFI gave lesser reranking between periods 1 and 2. About 49% of the heifers maintained their RFI class, whereas 51% of the heifers had a different RFI class in period 2. Furthermore, 41% of the heifers changed their RFI in period 2 by <0.5 SD, whereas the rest of the heifers changed by ≥0.5 SD. These results indicate that reranking exists in heifers despite receiving the same diet in the 2 feeding periods and that the reranking may be more serious in heifers (28%) with extreme RFI performances in each period.

Accuracy of genomic breeding values for residual feed intake in crossbred beef cattle.

The benefit of using genomic breeding values (GEBV) in predicting ADG, DMI, and residual feed intake for an admixed population was investigated. Phenotypic data consisting of individual daily feed intake measurements for 721 beef cattle steers tested over 5 yr was available for analysis. The animals used were an admixed population of spring-born steers, progeny of a cross between 3 sire breeds and a composite dam line. Training and validation data sets were defined by randomly splitting the data into training and testing data sets based on sire family so that there was no overlap of sires in the 2 sets. The random split was replicated to obtain 5 separate data sets. Two methods (BayesB and random regression BLUP) were used to estimate marker effects and to define marker panels and ultimately the GEBV. The accuracy of prediction (the correlation between the phenotypes and GEBV) was compared between SNP panels. Accuracy for all traits was low, ranging from 0.223 to 0.479 for marker panels with 200 SNP, and 0.114 to 0.246 for marker panels with 37,959 SNP, depending on the genomic selection method used. This was less than accuracies observed for polygenic EBV accuracies, which ranged from 0.504 to 0.602. The results obtained from this study demonstrate that the utility of genetic markers for genomic prediction of residual feed intake in beef cattle may be suboptimal. Differences in accuracy were observed between sire breeds when the random regression BLUP method was used, which may imply that the correlations obtained by this method were confounded by the ability of the selected SNP to trace breed differences. This may also suggest that prediction equations derived from such an admixed population may be useful only in populations of similar composition. Given the sample size used in this study, there is a need for increased feed intake testing if substantially greater accuracies are to be achieved.