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Featured researches published by J. M. Thompson.


Animal Production Science | 2008

Beef quality grades as determined by Korean and Australian consumers

J. M. Thompson; R. Polkinghorne; I. H. Hwang; A. M. Gee; Sung-Back Cho; Byoungho Park; Jong-Yeol Lee

Consumer responses were examined in an incomplete factorial design where Australian consumers evaluated 216 beef samples derived from 18 cattle killed in Australia and Korean consumers evaluated 216 samples from the same 18 cattle, plus 216 similar samples from 18 Korean cattle. Samples of the Mm. triceps brachii, longissimus dorsi and semimembranosus were cooked using grill and Korean barbeque methods. Each sample was sensory tested by 10 consumers, who scored it for tenderness, juiciness, like flavour, and overall liking. Consumers then graded each sample as either unsatisfactory (2 star), good every day (3 star), better than every day (4 star), or premium (5 star) quality. For those samples assessed by both Australian and Korean consumers, the Korean consumers graded a higher proportion of samples ‘unsatisfactory’ and a lower proportion of samples ‘premium’ grade product than Australian consumers. Using a composite meat quality score (MQ4) to predict grade, a discriminant analysis showed that the Korean consumers had boundary cut-offs for the lower grades, which were ~4–10 palatability units higher than the Australian consumers. Analysis of the residuals between actual and predicted palatability scores showed that the Meat Standards Australia (MSA) grading model produced relatively unbiased estimates within ±2 MQ4 units for the different consumer groups, muscle and carcass suspension treatments, with the exception of the M. semimembranosus samples. Implications of the results for both Korean and Australian beef markets through the use of an empirical grading model to predict palatability are discussed.


Animal Production Science | 2008

Effects of hormonal growth promotants (HGP) on growth, carcass characteristics, the palatability of different muscles in the beef carcass and their interaction with aging

J. M. Thompson; B. M. McIntyre; G. Tudor; D.W. Pethick; Rod Polkinghorne; Ray Watson

Effects of hormonal growth promotant (HGP) implantation on liveweight, carcass and meat quality measurements were examined using 80 Angus yearling cattle. After entry to the feedlot, 40 steers and 40 heifers were implanted with Revalor-S (28mg oestradiol and 140mg trenbolone acetate) and Revalor-H (20mg oestradiol, 200mg trenbolone acetate), respectively. Cattle were slaughtered after 55 and 65 days on feed. Samples from the Mm. longissimus dorsi,bicepsfemoris(thecapandbodyportions),gluteusmedius(theeyeandDportions),infraspinatusandtricepsbrachii werepreparedforsensorytestingafteragingfor5and21daysafterslaughter.Atotalof854musclesampleswerecookedby grill (601) or roast (253) methods and served to consumers using the Meat Standards Australia taste panel protocols. Whenadjustedtothesameinitialliveweight,implantationwithRevalor-HandRevalor-Sresultedina4and7%increase in slaughter weight, respectively. Implantation resulted in an increased ossification score in steers (P <0.05), but not in heifers. Therewas asignificantinteraction(P <0.05) betweenHGPimplantation anddaysaged forshearforce.There wasa small effect of HGP implants on compression (P <0.05), but not on cook loss and intramuscular fat percentage. Muscles differed in their response to HGP implantation (P <0.05) for tenderness, overall liking and palatability scores. Muscles also differedintheiragingratesafterslaughter(P <0.05).ThegreatestresponseinsensoryscorestoHGPimplantationwasfound in those muscles that had the highest aging rates. Possible mechanisms by which muscles differed in their response to HGP implantation are discussed.


BMC Genomics | 2010

Use of a bovine genome array to identify new biological pathways for beef marbling in Hanwoo (Korean Cattle)

Seung-Hwan Lee; Cedric Gondro; Julius van der Werf; Nam-Kuk Kim; Dajeong Lim; Eung-Woo Park; Sung-Jong Oh; J. P. Gibson; J. M. Thompson

BackgroundMarbling (intramuscular fat) is a valuable trait that impacts on meat quality and an important factor determining price of beef in the Korean beef market. Animals that are destined for this high marbling market are fed a high concentrate ration for approximately 30 months in the Korean finishing farms. However, this feeding strategy leads to inefficiencies and excessive fat production. This study aimed to identify candidate genes and pathways associated with intramuscular fat deposition on highly divergent marbling phenotypes in adult Hanwoo cattle.ResultsBovine genome array analysis was conducted to detect differentially expressed genes (DEGs) in m. longissimus with divergent marbling phenotype (marbling score 2 to 7). Three data-processing methods (MAS5.0, GCRMA and RMA) were used to test for differential expression (DE). Statistical analysis identified 21 significant transcripts from at least two data-processing methods (P < 0.01). All 21 differentially expressed genes were validated by real-time PCR. Results showed a high concordance in the gene expression fold change between the microarrays and the real time PCR data. Gene Ontology (GO) and pathway analysis demonstrated that some genes (ADAMTS4, CYP51A and SQLE) over expressed in high marbled animals are involved in a protein catabolic process and a cholesterol biosynthesis process. In addition, pathway analysis also revealed that ADAMTS4 is activated by three regulators (IL-17A, TNFα and TGFβ1). QRT-PCR was used to investigate gene expression of these regulators in muscle with divergent intramuscular fat contents. The results demonstrate that ADAMTS4 and TGFβ1 are associated with increasing marbling fat. An ADAMTS4/TGFβ1 pathway seems to be associated with the phenotypic differences between high and low marbled groups.ConclusionsMarbling differences are possibly a function of complex signaling pathway interactions between muscle and fat. These results suggest that ADAMTS4, which is involved in connective tissue degradation, could play a role in an important biological pathway for building up marbling in cattle. Moreover, ADAMTS4 and TGFβ 1could potentially be used as an early biological marker for marbling fat content in the early stages of growth.


Animal Production Science | 2008

Demographic and design effects on beef sensory scores given by Korean and Australian consumers

I. H. Hwang; R. Polkinghorne; Jong-Yeol Lee; J. M. Thompson

Data from 648 beef samples, which had been sensory tested by 720 Korean and 540 Australian consumers were used to quantify design and demographic effects on beef sensory scores. The samples were from 36 carcasses, where sides had been either hung by the Achilles tendon or hip suspended. At boning, samples from three muscles (M. triceps brachii, M. longissimus dorsi and M. semimembranosus) were prepared and cooked by either grill (25-mm-thick steaks) or Korean barbeque (BBQ, 4-mm-thick samples) methods. A Latin square design was used to allocate samples to different presentation orders to be tasted in association with different samples. For both cooking techniques each consumer tested a starter sample followed by six experimental samples, with each sample being tasted by 10 different consumers. Design (taste panel, session, order, carry-over, sample and consumer) and demographic (age class, gender, occupation, frequency of eating meat, number of adults and children living in the house, their appreciation of meat and degree of doneness and income) effects were examined separately for tenderness, juiciness, like flavour, overall liking and a composite palatability score, within the four consumer group/cooking method subclasses. For grill samples, order of presentation was significant for most sensory variables. For BBQ samples, order of presentation failed to achieve significance for Australian consumers, but was significant (Pu2009 u20090.05) for all consumer group/cooking methods. Correlations between raw scores and those adjusted for design and demographic effects ranged from 0.93 to 0.99, indicating that if the design was balanced, or nearly balanced for design effects, then further adjustment of sensory scores was not necessary. Clipping 40% of outlying consumer scores reduced the variance of the sample mean by ~30%.


Animal Production Science | 2008

Effect of carcass suspension and cooking method on the palatability of three beef muscles as assessed by Korean and Australian consumers

Byoungho Park; I. H. Hwang; Sung-Back Cho; Y. M. Yoo; Junhwan Kim; Jong-Yeol Lee; R. Polkinghorne; J. M. Thompson

A total of 36 steer carcasses (18 slaughtered in Australia and 18 slaughtered in Korea), where one side had been suspended by the hip (tenderstretch) and the other by the Achilles tendon were used to provide sensory and shear force samples from the Mm. triceps brachii, longissimus lumborum and semimembranosus. Sensory samples were cooked using grill (25u2009mm thick) and barbeque (BBQ, 4u2009mm thick) methods and served to 360 untrained Australian and 720 untrained Korean consumers. Australian consumers sensory tested grill and BBQ samples from Australian carcasses (216 samples), while Korean consumers sensory tested grill and BBQ samples from both Australian and Korean carcasses (a total of 432 samples). The three-way interaction between carcass suspension, cooking method and muscle was significant (Pu2009<u20090.05) for tenderness, overall liking and a composite palatability score (MQ4), where the combination of BBQ cooking and hip suspension resulted in large increases in sensory scores for the M. semimembranosus. Variation in sensory scores and shear force are discussed in the context of possible interactions with cooking temperature. There was a significant (Pu2009<u20090.05) first order interaction between consumer group and muscle for juiciness score. Consumer effects were significant (Pu2009<u20090.05) for all sensory scores, being largest for juiciness (~8 sensory units), like flavour and overall liking (both ~6 sensory units) and MQ4 (~5 sensory units) scores, with the smallest effect on tenderness (~2 sensory units).


Mammalian Genome | 2011

QTL and gene expression analyses identify genes affecting carcass weight and marbling on BTA14 in Hanwoo (Korean Cattle)

Seung-Hwan Lee; J. H. J. van der Werf; Nam Kuk Kim; Sang Hong Lee; Cedric Gondro; Eung Woo Park; Sung Jong Oh; J. P. Gibson; J. M. Thompson

Causal mutations affecting quantitative trait variation can be good targets for marker-assisted selection for carcass traits in beef cattle. In this study, linkage and linkage disequilibrium analysis (LDLA) for four carcass traits was undertaken using 19 markers on bovine chromosome 14. The LDLA analysis detected quantitative trait loci (QTL) for carcass weight (CWT) and eye muscle area (EMA) at the same position at around 50xa0cM and surrounded by the markers FABP4SNP2774C>G and FABP4_μsat3237. The QTL for marbling (MAR) was identified at the midpoint of markers BMS4513 and RM137 in a 3.5-cM marker interval. The most likely position for a second QTL for CWT was found at the midpoint of tenth marker bracket (FABP4SNP2774C>G and FABP4_μsat3237). For this marker bracket, the total number of haplotypes was 34 with a most common frequency of 0.118. Effects of haplotypes on CWT varied from a −5-kg deviation for haplotype 6 to +8xa0kg for haplotype 23. To determine which genes contribute to the QTL effect, gene expression analysis was performed in muscle for a wide range of phenotypes. The results demonstrate that two genes, LOC781182 (pxa0=xa00.002) and TRPS1 (pxa0=xa00.006) were upregulated with increasing CWT and EMA, whereas only LOC614744 (pxa0=xa00.04) has a significant effect on intramuscular fat (IMF) content. Two genetic markers detected in FABP4 were the most likely QTL position in this QTL study, but FABP4 did not show a significant effect on both traits (CWT and EMA) in gene expression analysis. We conclude that three genes could be potential causal genes affecting carcass traits CWT, EMA, and IMF in Hanwoo.


Animal Production Science | 2008

Effect of repeated implants of oestradiol-17b on beef palatability in Brahman and Braham cross steers finished to different market end points

J. M. Thompson; R. Polkinghorne; M. Porter; H. M. Burrow; R. A. Hunter; G. J. McCrabb; Ray Watson

The effect of repeated implantation with 20mg oestradiol-17b (Compudose 100) on carcass and meat quality traits was investigated using 478Bos indicusandB. indicus ·Bos tauruscross steers finished on either pasture or grain to achieve carcass weight for one of three market end points (domestic, 220kg; Korean, 280kg; or Japanese, 340kg). In the oestradiol-17b treatment group, animals were administered implants at ~100-day intervals, with the number of implants administered to any steer ranging from one to eight. Cattle were slaughtered and at boning the anterior portion of the M. longissimus lumborum was removed and frozen after aging for 1 day for later objective meat quality measurements (shear force, compression and cook loss %). The adjoining portion was aged for 14 days before consumer sensory testing using the Meat Standards Australia protocols. Each sample was scored for tenderness, juiciness, like flavour and overall liking by 10 untrained consumers. Implanting increased carcass weights and ossification scores (P 0.05) on sensory scores, or objective meat tenderness.


Genes & Genomics | 2012

Genome wide QTL mapping to identify candidate genes for carcass traits in Hanwoo (Korean Cattle)

Seung Hwan Lee; Julius van der Werf; Sang Hong Lee; Da Jeong Lim; Eung Woo Park; Cedric Gondro; Duhak Yoon; Sung Jong Oh; Oun Hyun Kim; J. P. Gibson; J. M. Thompson

Meat quality traits are the most economically important traits affecting the beef industry in Korea. We performed a whole genome quantitative trait locus (QTL) mapping study of carcass data in Hanwoo Korean cattle. Two hundred sixty-six Hanwoo steers from 65 sires were genotyped using a 10K Affymetrix SNP chip. The average SNP interval across the bovine genome was 1.5Mb. Associations between each individual SNP and four carcass traits [carcass weight (CWT), eye muscle area (EMA), back fat thickness (BFT), and marbling (MAR)] were assessed using a linear mixed model of each trait. Combined linkage and linkage disequilibrium analysis (LDLA) detected six potential QTL on BTA04, 06, 13, 16, 17, and 23 at the chromosome-wise level (P<0.05). Two MAR QTL were detected at 52.2 cM of BTA06 and 46.04 cM of BTA17. We identified three genes (ARAP2, LOC539460, and LOC511424) in the QTL region of BTA06 and seven genes (RPS14, SCARB1, LOC782103, BRI3BP, AACS, DHX37, and UBC) in the QTL region of BTA17. One significant QTL for CWT was detected at 100 cM on BTA04 and the corresponding QTL region spanned 1.7 cM from 99.7 to 101.4 cM. For EMA QTL, one significant QTL was detected at 3.9 cM of BTA23 and the most likely QTL interval was 1.4 cM, placing 15 candidate genes in the marker bracket. Finally, two QTL for BFT were identified at 68 cM on BTA13 and 24 cM on BTA16. The LPIN3 gene, which is functionally associated with lipodystrophy in humans, is located in the BFT QTL on BTA13. Thus, two potential candidate genes, acetoacetyl-CoA synthetase (AACS) and lipin (LPIN), were detected in QTL regions on BTA17 for MAR and BTA13 for BFT, respectively. In conclusion, LDLA analysis can be used to detect chromosome regions harboring QTL and candidate genes with a low density SNP panel, yielding relatively narrow confidence intervals regarding location.


Journal of Biochemistry and Molecular Biology | 2007

Identification of Differentially Expressed Genes Related to Intramuscular Fat Development in the Early and Late Fattening Stages of Hanwoo Steers

Seung Hwan Lee; Eung-Woo Park; Yong-Min Cho; Sung-Kon Kim; Jun-Heon Lee; Jin-Tae Jeon; Chang-Soo Lee; Seok-Ki Im; Sung-Jong Oh; J. M. Thompson; Duhak Yoon


Australasian Agribusiness Review | 2009

The cost of non-compliance to beef market specifications

Andrew Slack-Smith; Garry R. Griffith; J. M. Thompson

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Seung Hwan Lee

Seoul National University

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Duhak Yoon

Kyungpook National University

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Eung-Woo Park

Rural Development Administration

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I. H. Hwang

Chonbuk National University

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Jong-Yeol Lee

Rural Development Administration

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Sung-Jong Oh

Rural Development Administration

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Ray Watson

University of Melbourne

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Sang Hong Lee

University of Queensland

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Byoungho Park

Rural Development Administration

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Eung Woo Park

Rural Development Administration

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