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Dive into the research topics where J.M. Wilkinson is active.

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Featured researches published by J.M. Wilkinson.


Journal of Bone and Joint Surgery-british Volume | 2001

Measuring bone mineral density of the pelvis and proximal femur after total hip arthroplasty

J.M. Wilkinson; Nicola Peel; Reginald A. Elson; Ian Stockley; Richard Eastell

We aimed to evaluate the precision and longitudinal sensitivity of measurement of bone mineral density (BMD) in the pelvis and to determine the effect of bone cement on the measurement of BMD in femoral regions of interest (ROI) after total hip arthroplasty (THA). A series of 29 patients had duplicate dual-energy x-ray absorptiometry (DXA) scans of the hip within 13 months of THA. Pelvic analyses using 3- and 4-ROI models gave a coefficient of variation (CV) of 2.5% to 3.6% and of 2.5% to 4.8%, respectively. Repeat scans in 17 subjects one year later showed a significant change in BMD in three regions using the 4-ROI model, compared with change in only one region with the 3-ROI model (p < 0.05). Manual exclusion of cement from femoral ROIs increased the net CV from 1.6% to 3.6% (p = 0.001), and decreased the measured BMD by 20% (t = 12.1, p < 0.001). Studies of two cement phantoms in vitro showed a small downward drift in bone cement BMD giving a measurement error of less than 0.03 g/cm2/year associated with inclusion of cement in femoral ROIs. Changes in pelvic periprosthetic BMD are best detected using a 4-ROI model. Analysis of femoral ROI is more precise without exclusion of cement although an awareness of its effect on the measurement of the BMD is needed.


IEEE Transactions on Medical Imaging | 2013

Fully Automatic Segmentation of the Proximal Femur Using Random Forest Regression Voting

Claudia Lindner; S. Thiagarajah; J.M. Wilkinson; Gillian A. Wallis; Timothy F. Cootes

Extraction of bone contours from radiographs plays an important role in disease diagnosis, preoperative planning, and treatment analysis. We present a fully automatic method to accurately segment the proximal femur in anteroposterior pelvic radiographs. A number of candidate positions are produced by a global search with a detector. Each is then refined using a statistical shape model together with local detectors for each model point. Both global and local models use Random Forest regression to vote for the optimal positions, leading to robust and accurate results. The performance of the system is evaluated using a set of 839 images of mixed quality. We show that the local search significantly outperforms a range of alternative matching techniques, and that the fully automated system is able to achieve a mean point-to-curve error of less than 0.9 mm for 99% of all 839 images. To the best of our knowledge, this is the most accurate automatic method for segmenting the proximal femur in radiographs yet reported.


European Journal of Human Genetics | 2011

The effect of genome-wide association scan quality control on imputation outcome for common variants

Lorraine Southam; Kalliope Panoutsopoulou; N W Rayner; Kay Chapman; Caroline Durrant; Teresa Ferreira; N K Arden; Andrew Carr; Panos Deloukas; Michael Doherty; John Loughlin; A. W. McCaskie; William Ollier; S Ralston; Tim D. Spector; Ana M. Valdes; Gillian A. Wallis; J.M. Wilkinson; Jonathan Marchini; Eleftheria Zeggini

Imputation is an extremely valuable tool in conducting and synthesising genome-wide association studies (GWASs). Directly typed SNP quality control (QC) is thought to affect imputation quality. It is, therefore, common practise to use quality-controlled (QCed) data as an input for imputing genotypes. This study aims to determine the effect of commonly applied QC steps on imputation outcomes. We performed several iterations of imputing SNPs across chromosome 22 in a dataset consisting of 3177 samples with Illumina 610k (Illumina, San Diego, CA, USA) GWAS data, applying different QC steps each time. The imputed genotypes were compared with the directly typed genotypes. In addition, we investigated the correlation between alternatively QCed data. We also applied a series of post-imputation QC steps balancing elimination of poorly imputed SNPs and information loss. We found that the difference between the unQCed data and the fully QCed data on imputation outcome was minimal. Our study shows that imputation of common variants is generally very accurate and robust to GWAS QC, which is not a major factor affecting imputation outcome. A minority of common-frequency SNPs with particular properties cannot be accurately imputed regardless of QC stringency. These findings may not generalise to the imputation of low frequency and rare variants.


Annals of the Rheumatic Diseases | 2013

No evidence of an association between mitochondrial DNA variants and osteoarthritis in 7393 cases and 5122 controls.

Gavin Hudson; Kalliope Panoutsopoulou; Ian Wilson; Lorraine Southam; Nigel W. Rayner; N K Arden; Fraser Birrell; I Carluke; Andrew Carr; Kay Chapman; Panos Deloukas; Michael Doherty; A. W. McCaskie; William Ollier; Stuart H. Ralston; M. R. Reed; Tim D. Spector; Ana M. Valdes; Gillian A. Wallis; J.M. Wilkinson; Eleftheria Zeggini; David C. Samuels; John Loughlin; P.F. Chinnery

Objectives Osteoarthritis (OA) has a complex aetiology with a strong genetic component. Genome-wide association studies implicate several nuclear genes in the aetiology, but a major component of the heritability has yet to be defined at the molecular level. Initial studies implicate maternally inherited variants of mitochondrial DNA (mtDNA) in subgroups of patients with OA based on gender and specific joint involvement, but these findings have not been replicated. Methods The authors studied 138 maternally inherited mtDNA variants genotyped in a two cohort genetic association study across a total of 7393 OA cases from the arcOGEN consortium and 5122 controls genotyped in the Wellcome Trust Case Control consortium 2 study. Results Following data quality control we examined 48 mtDNA variants that were common in cohort 1 and cohort 2, and found no association with OA. None of the phenotypic subgroups previously associated with mtDNA haplogroups were associated in this study. Conclusions We were not able to replicate previously published findings in the largest mtDNA association study to date. The evidence linking OA to mtDNA is not compelling at present.


Osteoarthritis and Cartilage | 2014

Cannabinoid WIN-55,212-2 mesylate inhibits interleukin-1β induced matrix metalloproteinase and tissue inhibitor of matrix metalloproteinase expression in human chondrocytes

Sara Dunn; J.M. Wilkinson; A. Crawford; C. L. Le Maitre; Rowena A.D. Bunning

OBJECTIVE Interleukin-1β (IL-1β) is involved in the up-regulation of matrix metalloproteinases (MMPs) leading to cartilage degradation. Cannabinoids are anti-inflammatory and reduce joint damage in animal models of arthritis. This study aimed to determine a mechanism whereby the synthetic cannabinoid WIN-55,212-2 mesylate (WIN-55) may inhibit cartilage degradation. METHODS Effects of WIN-55 were studied on IL-1β stimulated production of MMP-3 and -13 and their inhibitors TIMP-1 and -2 in human chondrocytes. Chondrocytes were obtained from articular cartilage of patients undergoing total knee replacement. Chondrocytes were grown in monolayer and 3D alginate bead cultures. Real-time polymerase chain reaction (PCR) was used to determine the gene expression of MMP-3, -13, TIMP-1 and -2 and Enzyme Linked Immunosorbent Assay (ELISA) to measure the amount of MMP-3 and MMP-13 protein released into media. Immunocytochemistry was used to investigate the expression of cannabinoid receptors in chondrocyte cultures. RESULTS Treatment with WIN-55 alone or in combination with IL-1β, decreased or abolished MMP-3, -13, TIMP-1 and -2 gene expression in human chondrocyte monolayer and alginate bead cultures in both a concentration and time dependent manner. WIN-55 treatment alone, and in combination with IL-1β, reduced MMP-3 and -13 protein production by chondrocytes cultured in alginate beads. Immunocytochemistry demonstrated the expression of cannabinoid receptors in chondrocyte cultures. CONCLUSION Cannabinoid WIN-55 can reduce both basal and IL-1β stimulated gene and protein expression of MMP-3 and -13. However WIN-55 also decreased basal levels of TIMP-1 and -2 mRNA. These actions of WIN-55 suggest a mechanism by which cannabinoids may act to prevent cartilage breakdown in arthritis.


Arthritis & Rheumatism | 2015

Investigation of association between hip osteoarthritis susceptibility loci and radiographic proximal femur shape

Claudia Lindner; S. Thiagarajah; J.M. Wilkinson; Kalliope Panoutsopoulou; Aaron G. Day-Williams; Timothy F. Cootes; Gillian A. Wallis

To test whether previously reported hip morphology or osteoarthritis (OA) susceptibility loci are associated with proximal femur shape as represented by statistical shape model (SSM) modes and as univariate or multivariate quantitative traits.


medical image computing and computer assisted intervention | 2013

Accurate Bone Segmentation in 2D Radiographs Using Fully Automatic Shape Model Matching Based On Regression-Voting

Claudia Lindner; S. Thiagarajah; J.M. Wilkinson; Gillian A. Wallis; Timothy F. Cootes

Recent work has shown that using Random Forests (RFs) to vote for the optimal position of model feature points leads to robust and accurate shape model matching. This paper applies RF regression-voting as part of a fully automatic shape model matching (FASMM) system to three different radiograph segmentation problems: the proximal femur, the bones of the knee joint and the joints of the hand. We investigate why this approach works so well and demonstrate that the performance comes from a combination of three properties: (i) The integration of votes from multiple regions around the model point. (ii) The combination of multiple independent votes from each tree. (iii) The use of a coarse to fine strategy. We show that each property can improve performance, and that the best performance comes from using all three. We demonstrate that FASMM based on RF regression-voting generalises well across application areas, achieving state of the art performance in each of the three segmentation problems. This FASMM system provides an accurate and time-efficient way for the segmentation of bony structures in radiographs.


Nature Genetics | 2018

Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.

Eleni Zengini; Konstantinos Hatzikotoulas; Ioanna Tachmazidou; Julia Steinberg; Fernando Pires Hartwig; Lorraine Southam; Sophie Hackinger; C.G. Boer; Unnur Styrkarsdottir; Arthur Gilly; Daniel Suveges; Britt Killian; Thorvaldur Ingvarsson; Helgi Jonsson; George C. Babis; Andrew McCaskie; André G. Uitterlinden; Joyce B. J. van Meurs; Unnur Thorsteinsdottir; Kari Stefansson; George Davey Smith; J.M. Wilkinson; Eleftheria Zeggini

Osteoarthritis is a common complex disease imposing a large public-health burden. Here, we performed a genome-wide association study for osteoarthritis, using data across 16.5 million variants from the UK Biobank resource. After performing replication and meta-analysis in up to 30,727 cases and 297,191 controls, we identified nine new osteoarthritis loci, in all of which the most likely causal variant was noncoding. For three loci, we detected association with biologically relevant radiographic endophenotypes, and in five signals we identified genes that were differentially expressed in degraded compared with intact articular cartilage from patients with osteoarthritis. We established causal effects on osteoarthritis for higher body mass index but not for triglyceride levels or genetic predisposition to type 2 diabetes.Genome-wide association study for osteoarthritis using data from UK Biobank identifies loci for knee- and hip-specific disease. Functional analyses of chondrocytes provide further insight into candidate causal genes.


Human Molecular Genetics | 2017

Evaluation of shared genetic aetiology between osteoarthritis and bone mineral density identifies SMAD3 as a novel osteoarthritis risk locus

Sophie Hackinger; Katerina Trajanoska; Unnur Styrkarsdottir; Eleni Zengini; Julia Steinberg; Graham R. S. Ritchie; Konstantinos Hatzikotoulas; Arthur Gilly; Evangelos Evangelou; John P. Kemp; David Evans; Thorvaldur Ingvarsson; Helgi Jonsson; Unnur Thorsteinsdottir; Kari Stefansson; A. W. McCaskie; Roger A. Brooks; J.M. Wilkinson; Fernando Rivadeneira; Eleftheria Zeggini

Abstract Osteoarthritis (OA) is a common complex disease with high public health burden and no curative therapy. High bone mineral density (BMD) is associated with an increased risk of developing OA, suggesting a shared underlying biology. Here, we performed the first systematic overlap analysis of OA and BMD on a genome wide scale. We used summary statistics from the GEFOS consortium for lumbar spine (n = 31,800) and femoral neck (n = 32,961) BMD, and from the arcOGEN consortium for three OA phenotypes (hip, ncases=3,498; knee, ncases=3,266; hip and/or knee, ncases=7,410; ncontrols=11,009). Performing LD score regression we found a significant genetic correlation between the combined OA phenotype (hip and/or knee) and lumbar spine BMD (rg=0.18, P = 2.23 × 10−2), which may be driven by the presence of spinal osteophytes. We identified 143 variants with evidence for cross-phenotype association which we took forward for replication in independent large-scale OA datasets, and subsequent meta-analysis with arcOGEN for a total sample size of up to 23,425 cases and 236,814 controls. We found robustly replicating evidence for association with OA at rs12901071 (OR 1.08 95% CI 1.05–1.11, Pmeta=3.12 × 10−10), an intronic variant in the SMAD3 gene, which is known to play a role in bone remodeling and cartilage maintenance. We were able to confirm expression of SMAD3 in intact and degraded cartilage of the knee and hip. Our findings provide the first systematic evaluation of pleiotropy between OA and BMD, highlight genes with biological relevance to both traits, and establish a robust new OA genetic risk locus at SMAD3.


Journal of Orthopaedic Research | 2015

Cobalt and chromium exposure affects osteoblast function and impairs the mineralization of prosthesis surfaces in vitro.

Karan M. Shah; J.M. Wilkinson; Alison Gartland

Cobalt (Co) and chromium (Cr) ions and nanoparticles equivalent to those released through tribo‐corrosion of prosthetic metal‐on‐metal (MOM) bearings and taper junctions are detrimental to osteoblast activity and function in vitro when examined as individual species. Here we examined the effects of Co2+:Cr3+ and Co2+:Cr6+ combinations on osteoblast‐like SaOS‐2 cellular activity, alkaline phosphatase (ALP) activity and mineralization to better reflect clinical exposure conditions in vivo. We also assessed the effect of Co2+:Cr3+ combinations and Co:Cr nanoparticles on SaOS‐2 cell osteogenic responses on grit‐blasted, plasma‐sprayed titanium‐coated, and hydroxyapatite‐coated prosthesis surfaces. Cellular activity and ALP activity were reduced to a greater extent with combination treatments compared to individual ions. Co2+ and Cr3+ interacted additively and synergistically to reduce cellular activity and ALP activity, respectively, while the Co2+ with Cr6+ combination was dominated by the effect of Cr6+ alone. Mineralization by osteoblasts was greater on hydroxyapatite‐coated surfaces compared to grit‐blasted and plasma‐sprayed titanium‐coated surfaces. Treatments with Co2+:Cr3+ ions and Co:Cr nanoparticles reduced the percentage mineralization on all surfaces, with hydroxyapatite‐coated surfaces having the least reduction. In conclusion, our data suggests that previous studies investigating individual metal ions underestimate their potential clinical effects on osteoblast activity. Furthermore, the data suggests that hydroxyapatite‐coated surfaces may modulate osteoblast responses to metal debris.

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Eleftheria Zeggini

Wellcome Trust Sanger Institute

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Lorraine Southam

Wellcome Trust Sanger Institute

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Julia Steinberg

Wellcome Trust Sanger Institute

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Kalliope Panoutsopoulou

Wellcome Trust Sanger Institute

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Gillian A. Wallis

Wellcome Trust Centre for Cell-Matrix Research

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