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Featured researches published by J.R. Roche.


Journal of Dairy Science | 2008

Effect of Stocking Rate on Pasture Production, Milk Production, and Reproduction of Dairy Cows in Pasture-Based Systems

K.A. Macdonald; J.W. Penno; J.A.S. Lancaster; J.R. Roche

Ninety-four cows were randomly allocated to 1 of 5 stocking rates (2.2, 2.7, 3.1, 3.7, and 4.3 cows/ha) in a completely randomized design for 3 years. Herds were seasonal calving, with only minor differences in grazing management to optimize the profitability of each stocking rate (SR). Pasture production and quality data, milk and milk component data, and reproduction data were collected, averaged for SR treatment, and linear and quadratic contrasts on SR were evaluated. In addition, the Wilmink exponential model (y(t) = a + b x e((-0.05t) )+ c x t) was fitted to milk yield within lactation, and the parameters were averaged by SR treatment and analyzed as above. The median variation explained by the function for individual lactations was 84%. The amount of pasture grown tended to increase, and the quality of the pasture on offer increased linearly with increasing SR, reducing some of the negative impact of SR on the availability of pasture per cow. Milk production per cow declined linearly with increasing SR, although there was a tendency for most production variables to decline quadratically, with the negative effect of SR declining with increasing SR. The effect on milk production per cow was primarily because of a lower peak milk yield and a greater post-peak decline (less persistent milk profile), although a decline in lactation length with increasing SR was responsible for 24% of the effect of SR on milk yield. Milk production per hectare increased linearly with increasing SR, and there was only a small difference (approximately 3%/cow per ha) in the efficiency of converting feed dry matter into milk energy. Stocking rate did not affect reproductive success. The data are consistent with the need for a more robust measure of SR than cows per hectare because farms will differ in the genetic merit of their cows and in the potential to produce pasture. We introduce the concept of a comparative SR, whereby the carrying capacity of the farm is defined by the BW of the cows, the potential of the land to produce pasture, and the amount of supplement purchased (kg of BW/t of feed dry matter). The adoption of such a measure would facilitate the extrapolation and transfer of research findings among systems.


BMC Genomics | 2010

Modulation of the maternal immune system by the pre-implantation embryo

C.G. Walker; S. Meier; Mathew Littlejohn; Klaus Lehnert; J.R. Roche; Murray D. Mitchell

BackgroundA large proportion of pregnancy losses occur during the pre-implantation period, when the developing embryo is elongating rapidly and signalling its presence to the maternal system. The molecular mechanisms that prevent luteolysis and support embryo survival within the maternal environment are not well understood. To gain a more complete picture of these molecular events, genome-wide transcriptional profiles of reproductive day 17 endometrial tissue were determined in pregnant and cyclic Holstein-Friesian dairy cattle.ResultsMicroarray analyses revealed 1,839 and 1,189 differentially expressed transcripts between pregnant and cyclic animals (with ≥ 1.5 fold change in expression; P-value < 0.05, MTC Benjamini-Hochberg) in caruncular and intercaruncular endometrium respectively. Gene ontology and biological pathway analysis of differentially expressed genes revealed enrichment for genes involved in interferon signalling and modulation of the immune response in pregnant animals.ConclusionThe maternal immune system actively surveys the uterine environment during early pregnancy. The embryo modulates this response inducing the expression of endometrial molecules that suppress the immune response and promote maternal tolerance to the embryo. During this period of local immune suppression, genes of the innate immune response (in particular, antimicrobial genes) may function to protect the uterus against infection.


BMC Molecular Biology | 2009

Evaluation of real-time PCR endogenous control genes for analysis of gene expression in bovine endometrium

C.G. Walker; S. Meier; Murray D. Mitchell; J.R. Roche; Mathew Littlejohn

BackgroundQuantitative real-time PCR gene expression results are generally normalised using endogenous control genes. These reference genes should be expressed at a constant level across all sample groups in a study, and should not be influenced by study treatments or conditions. There has been no systematic investigation of endogenous control genes for bovine endometrium to date. The suitability of both commonly used and novel endogenous control genes was evaluated in this study, with the latter being selected from stably expressed transcripts identified through microarray analysis of bovine endometrium. Fifteen candidate endogenous control genes were assessed across different tissue subtypes in pregnant and cycling Holstein-Friesian dairy cows from two divergent genetic backgrounds.ResultsThe expression profiles of five commonly used endogenous control genes (GAPDH, PPIA, RPS9, RPS15A, and UXT) and 10 experimentally derived candidate endogenous control genes (SUZ12, C2ORF29, ZNF131, ACTR1A, HDAC1, SLC30A6, CNOT7, DNAJC17, BBS2, and RANBP10) were analysed across 44 samples to determine the most stably expressed gene. Gene stability was assessed using the statistical algorithms GeNorm and Normfinder. All genes presented with low overall variability (0.87 to 1.48% CV of Cq). However, when used to normalise a differentially expressed gene (oxytocin receptor - OXTR) in the samples, the reported relative gene expression levels were significantly affected by the control gene chosen. Based on the results of this analysis, SUZ12 is proposed as the most appropriate control gene for use in bovine endometrium during early pregnancy or the oestrus cycle.ConclusionThis study establishes the suitability of novel endogenous control genes for comparing expression levels in endometrial tissues of pregnant and cycling bovines, and demonstrates the utility of microarray analysis as a method for identifying endogenous control gene candidates.


Journal of Dairy Science | 2010

Relationships between endometritis and metabolic state during the transition period in pasture-grazed dairy cows

C.R. Burke; S. Meier; S. McDougall; Cwr Compton; Murray D. Mitchell; J.R. Roche

The primary objective of this study was to identify relationships between endometritis and metabolic state during the calving transition and early lactation periods. A subset of mixed age and breed dairy cows (n=78) from a seasonal, pasture-grazed herd of 389 cows was examined. The selected cows were grouped as having endometritis at d 42 postpartum or being unaffected by endometritis. Endometritis was defined as >6% (upper quartile) of uterine nucleated cells being polymorphonuclear cells (H-PMN; n=38); unaffected by endometritis was defined as ≤1% of nucleated cells being polymorphonuclear (L-PMN; n=40). Milk yield was determined at each milking, and milk composition (fat and protein) was determined at 2-wk intervals. Blood samples collected on d -14, 0 (d of calving), 4, 7, 14, 28, and 42 were analyzed for indicators of energy status (nonesterified fatty acids, glucose, and urea), liver function (albumin, globulin, glutamate dehydrogenase, and aspartate aminotransferase), inflammation (haptoglobin), and mineral status (Ca and Mg). Samples collected weekly from d 21 to 63 or 70 were analyzed for progesterone content. The postpartum anovulatory interval was defined to end on the first day postpartum that plasma progesterone concentration was ≥1 ng/mL. A greater percentage of H-PMN cows failed to ovulate before d 63 or 70 (34%) compared with L-PMN cows (10%), although the proportions of cows ovulating within either polymorphonuclear group was similar through d 56 postpartum. Plasma concentrations of albumin and the albumin:globulin ratio were consistently lower in H-PMN cows. Plasma Mg was lower, whereas glutamate dehydrogenase and aspartate aminotransferase were higher, in H-PMN cows during early lactation compared with L-PMN cows. Circulating metabolites indicative of energy status (nonesterified fatty acids, glucose, and urea) were not different between polymorphonuclear groups. Among 3- to 5-yr-old cows, daily milk yield for the first 42 d after calving was lower for H-PMN cows than for L-PMN cows. Among cows >5 yr old, protein percentage was lower in H-PMN cows compared with L-PMN cows. In summary, endometritis at 42 d postpartum in the herd studied was associated with an increased likelihood of remaining anovulatory. These cows had lower albumin concentrations throughout the calving transition period, perhaps indicating impaired liver function, with lower plasma Mg and evidence of hepatocellular damage in early lactation. Similar profiles of nonesterified fatty acids and glucose indicated that energy status was not a risk factor for endometritis.


Journal of Dairy Science | 2009

Insulin resistance in divergent strains of Holstein-Friesian dairy cows offered fresh pasture and increasing amounts of concentrate in early lactation.

L.M. Chagas; M.C. Lucy; Back Pj; Dominique Blache; J. Lee; P.J.S. Gore; A.J. Sheahan; J.R. Roche

The objective of this study was to determine whether the physiological response to an intravenous glucose challenge would be affected by genetic strain or concentrate supplementation in grazing Holstein-Friesian cows in early lactation. North American (NA; n = 30) or New Zealand (NZ; n = 30) cows were randomly allocated to 1 of 3 feeding treatments. All cows were offered a generous pasture allowance, and 4 of the 6 groups received either 3 or 6 kg of dry matter (DM)/cow per day of concentrates. During wk 5 of lactation, all cows underwent an intravenous glucose challenge. Cows of NA origin produced more milk than NZ cows, but there was no significant strain effect on milk fat or protein yield. Milk yield and the yield of individual components increased with increasing level of concentrate eaten, but there were no significant strain x diet interactions. During wk 1 to 6, mean body weight and body condition score decreased in all treatments. Average body weight was greater in NA cows, but body condition score was greater for NZ cows. There was no strain or diet effect on the length of the postpartum anovulatory interval, with cows ovulating before 40 d postpartum on average. Glucose fractional turnover rate was greater in NZ cows compared with those of NA origin and in all cows receiving 6 kg of DM concentrates, indicating a less severe insulin resistance in those treatments. Consistent with this, the time taken to dispose of half the peak glucose concentration was less when 6 kg of DM concentrate was fed, and tended to be less in NZ than in NA cows. There was no effect of genetic strain on glucose area under the curve (AUC) at 60 or 120 min, but AUC at both time points was less in cows receiving 6 kg of DM concentrates per day. Neither genetic strain nor nutrition affected basal or peak insulin concentrations, insulin increment, or insulin AUC, and there were no strain x diet interactions for any of the glucose challenge response variables measured. In conclusion, differences in milk production between NA and NZ cows in early lactation can, at least in part, be explained by the greater degree of insulin resistance in the NA cows, and this insulin resistance can be overcome by supplementing grazing cows with 6 kg of DM concentrates.


Journal of Dairy Science | 2015

Body condition score at calving affects systemic and hepatic transcriptome indicators of inflammation and nutrient metabolism in grazing dairy cows.

Haji Akbar; T.M. Grala; M. Vailati Riboni; F.C. Cardoso; G.A. Verkerk; J. McGowan; K.A. Macdonald; J.R. Webster; Karin E. Schütz; S. Meier; L.R. Matthews; J.R. Roche; Juan J. Loor

Calving body condition score (BCS) is an important determinant of early-lactation dry matter intake, milk yield, and disease incidence. The current study investigated the metabolic and molecular changes induced by the change in BCS. A group of cows of mixed age and breed were managed from the second half of the previous lactation to achieve mean group BCS (10-point scale) that were high (HBCS, 5.5; n=20), medium (MBCS, 4.5; n=18), or low (LBCS, 3.5; n=19). Blood was sampled at wk -4, -3, -2, 1, 3, 5, and 6 relative to parturition to measure biomarkers of energy balance, inflammation, and liver function. Liver was biopsied on wk 1, 3, and 5 relative to parturition, and 10 cows per BCS group were used for transcript profiling via quantitative PCR. Cows in HBCS and MBCS produced more milk and had greater concentrations of nonesterified fatty acids and β-hydroxybutyrate postpartum than LBCS. Peak concentrations of nonesterified fatty acids and β-hydroxybutyrate and greater hepatic triacylglycerol concentrations were recorded in HBCS at wk 3. Consistent with blood biomarkers, HBCS and MBCS had greater expression of genes associated with fatty acid oxidation (CPT1A, ACOX1), ketogenesis (HMGCS2), and hepatokines (FGF21, ANGPTL4), whereas HBCS had the lowest expression of APOB (lipoprotein transport). Greater expression during early lactation of BBOX1 in MBCS and LBCS suggested greater de novo carnitine synthesis. The greater BCS was associated with lower expression of growth hormone/insulin-like growth factor-1 signaling axis genes (GHR1A, IGF1, and IGFALS) and greater expression of gluconeogenic genes. These likely contributed to the higher milk production and greater gluconeogenesis. Despite greater serum haptoglobin around calving, cows in HBCS and MBCS had greater blood albumin. Cows in MBCS, however, had a higher albumin:globulin ratio, probably indicating a less pronounced inflammatory status and better liver function. The marked decrease in expression of NFKB1, STAT3, HP, and SAA3 coupled with the increase in ALB on wk 3 in MBCS cows were consistent with blood measures. Overall, results suggest that the greater milk production of cows with higher calving BCS is associated with a proinflammatory response without negatively affecting expression of genes related to metabolism and the growth hormone/insulin-like growth factor-1 axis. Results highlight the sensitivity of indicators of metabolic health and inflammatory state to subtle changes in calving BCS and, collectively, indicate a suboptimal health status in cows calving at either BCS 3.5 or 5.5 relative to BCS 4.5.


Journal of Dairy Science | 2011

Somatotropic axis and concentrate supplementation in grazing dairy cows of genetically diverse origin

T.M. Grala; M.C. Lucy; C.V.C. Phyn; A.J. Sheahan; J. Lee; J.R. Roche

Supplementing pasture-fed dairy cows with concentrates in early lactation was hypothesized to result in an earlier postpartum recoupling of the somatotropic axis in New Zealand (NZ)-type Holstein-Friesian dairy cows than in North American (NA)-type cows. To test this hypothesis, NA (n=30) and NZ (n=30) cows were allocated to 1 of 3 supplementation strategies (0, 3, or 6 kg of dry matter concentrate/d) for the first 12 wk of lactation in a completely randomized design and a 2×3 factorial arrangement. Production traits and characteristics of the somatotropic axis were studied at phenotypic, hormonal, and gene expression levels. Milk production and plasma metabolite concentrations were measured weekly, and liver was biopsied in wk 1, 4, 8, and 12 postcalving. North American cows produced more milk and displayed a larger degree of somatotropic axis uncoupling than did NZ cows. This was evident in strain differences in body condition score, blood growth hormone, and insulin-like growth factor-1 concentrations, and hepatic expression of growth hormone receptor-1a. No strain×diet interactions were observed for any characteristic of the somatotropic axis at either the blood metabolite or gene expression level; however, blood insulin concentrations during wk 7 to 11 postpartum increased with concentrate supplementation in NZ but not NA cows. These results demonstrate that feeding supplements does not result in an earlier recoupling of the somatotropic axis; however, the greater blood insulin concentrations with concentrate feeding in NZ cows from wk 7 may result in an earlier recoupling in this genetic strain, after the period investigated in this study. Further research is required to understand differences in insulin control between these genetic strains.


Animal Production Science | 2009

Weather, herbage quality and milk production in pastoral systems. 2. Temporal patterns and intra-relationships in herbage quality and mineral concentration parameters

J.R. Roche; Lr Turner; Jm Lee; D. C. Edmeades; Dj Donaghy; K.A. Macdonald; J.W. Penno; D.P. Berry

Prevailing weather conditions influence herbage growth and quality, and therefore may have a substantial impact on animal production. Before investigating relationships between weather factors, herbage quality, and animal production, it is beneficial to first quantify temporal trends in herbage quality characteristics and mineral concentrations. The objective of the present study was to investigate the existence of temporal trends in herbage quality characteristics and mineral concentrations, and to quantify the intra-dependency among these variables. Weekly herbage quality and mineral concentration data from a research farm were collected from 1995 to 2001, inclusive. Fitted sinusoidal functions demonstrated cyclic temporal trends across herbage quality variables, but there was little cyclic temporal variation in the majority of herbage mineral concentration variables. The repeatability of herbage quality measurements was low to moderate (22% for ether extract to 54% for metabolisable energy). Linear relationships were observed within all herbage quality variables and herbage mineral concentration variables. Neutral detergent fibre and acid detergent fibre concentrations were strongly positively correlated with each other (r = 0.87), and negatively correlated with herbage digestibility (r = -0.64 and -0.74, respectively), water-soluble carbohydrate concentration (r = -0.52 and -0.68, respectively) and metabolisable energy content (r = -0.60 and -0.75, respectively). The absolute correlations among most herbage minerals were poor (r <0.30). However, magnesium concentration was positively correlated with calcium (r = 0.54), copper (r = 0.56), and manganese (r = 0.37) concentrations, and negatively correlated with zinc (r = -0.56) concentration. Further investigation is required into the relationships between temporal weather and herbage quality trends, and their impact on animal production.


Journal of Dairy Science | 2011

Genetic strain and diet effects on grazing behavior, pasture intake, and milk production

A.J. Sheahan; E.S. Kolver; J.R. Roche

Understanding how dairy cows adjust their grazing behavior in response to feed supplements is important for the development of management strategies that optimize profit from supplementation. New Zealand Holstein-Friesian (HF) cows have been selected for milk production on a predominantly pasture-based diet; in comparison, HF cows of North American (NA) ancestry have been selected almost exclusively for milk yield and fed diets high in nonfiber carbohydrates (NFC). We hypothesized, therefore, that supplementation would have differing effects on grazing behavior, pasture dry matter intake (DMI), and milk production in these genetic strains at peak, mid, and late lactation. A study was conducted over 2 consecutive lactations, with NA and NZ cows randomly allocated at calving to 0, 3, or 6 kg of dry matter/day concentrate plus unrestricted access to pasture. Pasture DMI, milk production, and grazing behavior were recorded at peak, mid, and late lactation. Concentrates were fed in equal amounts at morning and afternoon milking. The NA cows produced more milk and milk components, and had a greater pasture DMI, despite spending less time grazing. Declines in time spent grazing and pasture DMI were associated with increasing concentrate DMI. Grazing behavior following morning supplementation was different from that recorded following afternoon supplementation. Grazing ceased following morning supplementation before rumen fill could be a limiting factor, and the length of the grazing interval was inversely proportional to the amount of concentrate offered; these results suggest that physiological rather than physical stimuli were responsible for grazing cessation. The decrease in time spent grazing with increasing concentrate DMI is consistent with changes in neuroendocrine factors secreted in response to the presence of food in the digestive tract or with circulating products of digestion. After afternoon supplementation, sunset signaled the end of grazing irrespective of stage of lactation, timing of sunset, or supplementation status, suggesting that photoperiod influenced grazing behavior. Results confirmed changes in grazing behavior, an associated reduction in pasture DMI, and an increase in milk production when cows consume increasing amounts of concentrates. However, as the effect of supplement on grazing behavior differed between morning and afternoon supplementation, further research is required to better understand the factors controlling grazing behavior, to allow improved milk production responses to supplementary feeding.


Journal of Dairy Science | 2011

Short communication: Effect of stocking rate on the economics of pasture-based dairy farms

K.A. Macdonald; D. Beca; J.W. Penno; J.A.S. Lancaster; J.R. Roche

Data from a multiyear farm systems study evaluating the effect of stocking rate (SR) on pasture production and utilization, milk production per cow and per hectare, reproduction, and cow health were used to determine the economic implications of altering SR. The effect of SR was also evaluated relative to cow size and total feed available (comparative stocking rate; CSR), to account for differences in cow size and feed supplement availability. Milk production, gross revenue, operating expenses, and operating profit per cow all declined with increasing SR and CSR. In comparison, milk production, gross revenue, and operating expenses per hectare increased with increasing SR and CSR. These effects were irrespective of milk price. The effect of SR on operating profit and return on assets, however, was dependent on milk payment system. When payment was based on the economic value of milk fat and protein, operating profit and return on assets were quadratically associated with both SR and CSR, declining at an SR greater or less than 3.3 cows/ha and a CSR greater or less than 77 kg of body weight/t of feed dry matter available. In comparison, when milk payment was based on a fluid milk pricing system, profit per hectare increased linearly with increasing SR and CSR, but return on assets was not affected by SR or CSR.

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J.K. Kay

University of Arizona

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C.G. Walker

University of Auckland

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T.M. Grala

University of Auckland

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A.G. Rius

University of Tennessee

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M.C. Lucy

University of Missouri

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