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Dive into the research topics where Ja-Myung Kim is active.

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Featured researches published by Ja-Myung Kim.


Proceedings of the National Academy of Sciences of the United States of America | 2012

Ocean acidification slows nitrogen fixation and growth in the dominant diazotroph Trichodesmium under low-iron conditions

Dalin Shi; Sven A. Kranz; Ja-Myung Kim; François M. M. Morel

Dissolution of anthropogenic CO2 increases the partial pressure of CO2 (pCO2) and decreases the pH of seawater. The rate of Fe uptake by the dominant N2-fixing cyanobacterium Trichodesmium declines as pH decreases in metal-buffered medium. The slower Fe-uptake rate at low pH results from changes in Fe chemistry and not from a physiological response of the organism. Contrary to previous observations in nutrient-replete media, increasing pCO2/decreasing pH causes a decrease in the rates of N2 fixation and growth in Trichodesmium under low-Fe conditions. This result was obtained even though the bioavailability of Fe was maintained at a constant level by increasing the total Fe concentration at low pH. Short-term experiments in which pCO2 and pH were varied independently showed that the decrease in N2 fixation is caused by decreasing pH rather than by increasing pCO2 and corresponds to a lower efficiency of the nitrogenase enzyme. To compensate partially for the loss of N2 fixation efficiency at low pH, Trichodesmium synthesizes additional nitrogenase. This increase comes partly at the cost of down-regulation of Fe-containing photosynthetic proteins. Our results show that although increasing pCO2 often is beneficial to photosynthetic marine organisms, the concurrent decreasing pH can affect primary producers negatively. Such negative effects can occur both through chemical mechanisms, such as the bioavailability of key nutrients like Fe, and through biological mechanisms, as shown by the decrease in N2 fixation in Fe-limited Trichodesmium.


Geophysical Research Letters | 2011

Shifts in biogenic carbon flow from particulate to dissolved forms under high carbon dioxide and warm ocean conditions

Ja-Myung Kim; Kitack Lee; Kyungsoon Shin; Eun Jin Yang; Anja Engel; David M. Karl; Hyun-Cheol Kim

Photosynthesis by phytoplankton in sunlit surface waters transforms inorganic carbon and nutrients into organic matter, a portion of which is subsequently transported vertically through the water column by the process known as the biological carbon pump (BCP). The BCP sustains the steep vertical gradient in total dissolved carbon, thereby contributing to net carbon sequestration. Any changes in the vertical transportation of the organic matter as a result of future climate variations will directly affect surface ocean carbon dioxide (CO 2) concentrations, and subsequently influence oceanic uptake of atmospheric CO 2 and climate. Here we present results of experiments designed to investigate the potential effects of ocean acidification and warming on the BCP. These perturbation experiments were carried out in enclosures (3,000 L volume) in a controlled mesocosm facility that mimicked future pCO 2 (∼900 ppmv) and temperature (3°C higher than ambient) conditions. The elevated CO 2 and temperature treatments disproportionately enhanced the ratio of dissolved organic carbon (DOC) production to particulate organic carbon (POC) production, whereas the total organic carbon (TOC) production remained relatively constant under all conditions tested. A greater partitioning of organic carbon into the DOC pool indicated a shift in the organic carbon flow from the particulate to dissolved forms, which may affect the major pathways involved in organic carbon export and sequestration under future ocean conditions.


Environmental Science & Technology | 2010

Enhanced Production of Oceanic Dimethylsulfide Resulting from CO2-Induced Grazing Activity in a High CO2 World

Ja-Myung Kim; Kitack Lee; Eun Jin Yang; Kyoungsoon Shin; Jae Hoon Noh; Kitae Park; Bonggil Hyun; Hae Jin Jeong; Ju-Hyoung Kim; Kwang Young Kim; Miok Kim; Hyun-Cheol Kim; Pung-Guk Jang; Min-Chul Jang

Oceanic dimethylsulfide (DMS) released to the atmosphere affects the Earths radiation budget through the production and growth of cloud condensation nuclei over the oceans. However, it is not yet known whether this negative climate feedback mechanism will intensify or weaken in oceans characterized by high CO(2) levels and warm temperatures. To investigate the effects of two emerging environmental threats (ocean acidification and warming) on marine DMS production, we performed a perturbation experiment in a coastal environment. Two sets of CO(2) and temperature conditions (a pCO(2) of ∼900 ppmv at ambient temperature conditions, and a pCO(2) of ∼900 ppmv at a temperature ∼3 °C warmer than ambient) significantly stimulated the grazing rate and the growth rate of heterotrophic dinoflagellates (ubiquitous marine microzooplankton). The increased grazing rate resulted in considerable DMS production. Our results indicate that increased grazing-induced DMS production may occur in high CO(2) oceans in the future.


Environmental Science & Technology | 2014

Direct linkage between dimethyl sulfide production and microzooplankton grazing, resulting from prey composition change under high partial pressure of carbon dioxide conditions

Kitae Park; Kitack Lee; Kyoungsoon Shin; Eun Jin Yang; Bonggil Hyun; Ja-Myung Kim; Jae Hoon Noh; Miok Kim; Bokyung Kong; Dong Han Choi; Su-Jin Choi; Pung-Guk Jang; Hae Jin Jeong

Oceanic dimethyl sulfide (DMS) is the enzymatic cleavage product of the algal metabolite dimethylsulfoniopropionate (DMSP) and is the most abundant form of sulfur released into the atmosphere. To investigate the effects of two emerging environmental threats (ocean acidification and warming) on marine DMS production, we performed a large-scale perturbation experiment in a coastal environment. At both ambient temperature and ∼ 2 °C warmer, an increase in partial pressure of carbon dioxide (pCO2) in seawater (160-830 ppmv pCO2) favored the growth of large diatoms, which outcompeted other phytoplankton species in a natural phytoplankton assemblage and reduced the growth rate of smaller, DMSP-rich phototrophic dinoflagellates. This decreased the grazing rate of heterotrophic dinoflagellates (ubiquitous micrograzers), resulting in reduced DMS production via grazing activity. Both the magnitude and sign of the effect of pCO2 on possible future oceanic DMS production were strongly linked to pCO2-induced alterations to the phytoplankton community and the cellular DMSP content of the dominant species and its association with micrograzers.


Limnology | 2010

Nutrients and chlorophyll-a dynamics in a temperate reservoir influenced by Asian monsoon along with in situ nutrient enrichment bioassays

Jae Hoon Lee; Ja-Myung Kim; Dong-Su Kim; Soon-Jin Hwang; Kwang-Guk An

Long-term nutrients and chlorophyll-a dynamics during 1993–2000 were analyzed in a temperate reservoir influenced by the Asian monsoon. Nonparametric Mann–Kendall tests and seasonal trend analyses indicated that there were no long-term annual increasing or decreasing trends in major trophic parameters over 8 years, but the monsoon seasonality was evident. Seasonality in chlorophyll (CHL) and total phosphorus (TP) showed a mono-modal pattern, which was closely associated with the monsoon season of July–August, and the magnitude of the mono-modal peak was greater in the headwater zone than in the downlake zone. Such temporal patterns fluctuated interannually over the study period, and the magnitude of the variation was directly controlled by the intensity of the monsoon rain. Empirical models of annual mean CHL–TP were developed supporting the view that phytoplankton in lentic ecosystems responds to P enrichment and that annual mean TP may provide a reliable basis for predicting the average algal abundance. Ambient nutrient analyses, N:P ratios and in situ nutrient enrichment bioassay experiments (NEBs) in premonsoon and postmonsoon supported the P limitation for phytoplankton growth. Ambient nutrients and non-volatile suspended solid (NVSS) data on CHL in the intense monsoon year, however, showed the possibility of light limitation, even though the NEBs did not show the direct evidence. These findings were confirmed by two-dimensional graphic approaches of trophic state index deviations (TSIDs).


Environmental Science & Technology | 2015

Bioavailability and Electroreactivity of Zinc Complexed to Strong and Weak Organic Ligands.

Ja-Myung Kim; Oliver Baars; François M. M. Morel

Laboratory experiments have established the importance of complexation by organic ligands in determining the bioavailability of trace metals to marine phytoplankton, while electrochemical measurements with field samples have demonstrated that a large fraction of bioactive trace metals are complexed to strong organic ligands in seawater. Using the model organic ligands, EDTA and histidine, we show a quantitative correspondence between the bioavailability of Zn to the diatom Thalassiosira weissflogii, and its reduction at -1.2 V (vs Ag/AgCl) on a hanging mercury drop electrode. Equilibrium calculations and polarographic data indicate that Zn bound in inorganic complexes and the 1:1 Zn-histidine complex, but not in the 1:2 Zn-histidine complex or the Zn-EDTA complexes, is taken up by the organism and reduced at the electrode surface, confirming a previous report of the bioavailability of weak Zn complexes. Electrochemical measurements of Zn speciation in seawater do not generally reveal the presence of weak (and potentially bioavailable) complexes; but such measurements (particularly by Anodic Stripping Voltammetry) should nonetheless often provide good estimates of the bioavailable Zn concentrations. These results can likely be generalized to other bioactive divalent trace metals.


Philosophical Transactions of the Royal Society A | 2016

The effect of acidification on the bioavailability and electrochemical lability of zinc in seawater

Ja-Myung Kim; Oliver Baars; François M. M. Morel

A poorly studied but potentially important consequence of the CO2-induced acidification of the surface ocean is a possible change in the bioavailability of trace metals, which play a critical role in the productivity and population dynamics of marine ecosystems. We report laboratory and field experiments designed to compare quantitatively the effects of acidification on the bioavailability of Zn, a metal essential to the growth of phytoplankton and on the extent of its complexation by model and natural ligands. We observed a good correspondence between the effects of pH on the rate of Zn uptake by a model diatom and the chemical lability of Zn measured by anodic stripping voltammetry (ASV). In model laboratory systems, the chemical lability and the bioavailability of Zn could either increase or decrease at low pH depending on the mix of complexing ligands. In a sample of coastal surface water, we observed similar increases in the ASV-labile and bioavailable Zn concentrations upon acidification, a result contrary to previous observations. These results, which can likely be generalized to other bioactive trace metals, mutatis mutandis, demonstrate the intricacy of the effects of ocean acidification on the chemistry and the ecology of surface seawater. This article is part of the themed issue ‘Biological and climatic impacts of ocean trace element chemistry’.


Limnology and Oceanography | 2006

The effect of seawater CO2 concentration on growth of a natural phytoplankton assemblage in a controlled mesocosm experiment

Ja-Myung Kim; Kitack Lee; Kyoungsoon Shin; Jung-Hoon Kang; Hyun-Woo Lee; Miok Kim; Pung-Guk Jang; Min-Chul Jang


Biogeosciences | 2013

Enhancement of photosynthetic carbon assimilation efficiency by phytoplankton in the future coastal ocean

Ja-Myung Kim; Kwang Young Kim; E. J. Kang; Kitack Lee; Jun-Youn Kim; Kitae Park; Kyungsoon Shin; Bonggil Hyun; Hae Jin Jeong


Limnology and Oceanography-methods | 2008

In situ ecosystem‐based carbon dioxide perturbation experiments: Design and performance evaluation of a mesocosm facility

Ja-Myung Kim; Kyoungsoon Shin; Kitack Lee; Byong-Kwon Park

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Kitack Lee

Pohang University of Science and Technology

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Miok Kim

Pohang University of Science and Technology

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Hyun-Cheol Kim

Pohang University of Science and Technology

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Kitae Park

Pohang University of Science and Technology

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Kwang Young Kim

Chonnam National University

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Hyun-Woo Lee

Pohang University of Science and Technology

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Ju-Hyoung Kim

Kunsan National University

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Kyoungsoon Shin

Chungnam National University

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