Jaakko Koivisto
University of Jyväskylä
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Featured researches published by Jaakko Koivisto.
Science | 2014
Maia Azubel; Jaakko Koivisto; Sami Malola; David A. Bushnell; Greg L. Hura; Ai Leen Koh; Hironori Tsunoyama; Tatsuya Tsukuda; Mika Pettersson; Hannu Häkkinen; Roger D. Kornberg
Detailed structure of a gold nanoparticle Adding only a few atoms or changing the capping ligand can dramatically change the structure of individual metal nanoparticles. Azubel et al. used aberration-corrected transmission electron microscopy to derive a three-dimensional reconstruction of water-soluble gold nanoparticles. Small-angle x-ray scattering and other techniques have also corroborated this model. They used this to determine the atomic structure, which compared favorably with density functional theory calculations, without assuming any a priori structural knowledge or the use of model fitting. Science, this issue p. 909 The atomic structure of a 68–gold atom nanoparticle is determined without prior structural knowledge or model fitting. Structure determination of gold nanoparticles (AuNPs) is necessary for understanding their physical and chemical properties, but only one AuNP larger than 1 nanometer in diameter [a 102–gold atom NP (Au102NP)] has been solved to atomic resolution. Whereas the Au102NP structure was determined by x-ray crystallography, other large AuNPs have proved refractory to this approach. Here, we report the structure determination of a Au68NP at atomic resolution by aberration-corrected transmission electron microscopy, performed with the use of a minimal electron dose, an approach that should prove applicable to metal NPs in general. The structure of the Au68NP was supported by small-angle x-ray scattering and by comparison of observed infrared absorption spectra with calculations by density functional theory.
Journal of the American Chemical Society | 2011
Eero Hulkko; Olga Lopez-Acevedo; Jaakko Koivisto; Yael Levi-Kalisman; Roger D. Kornberg; Mika Pettersson; Hannu Häkkinen
Optical absorption of a gold nanocluster of 102 Au atoms protected by 44 para-mercaptobenzoic acid (p-MBA) ligands is measured in the range of 0.05-6.2 eV (mid-IR to UV) by a combination of several techniques for purified samples in solid and solution phases. The results are compared to calculations for a model cluster Au(102)(SMe)(44) based on the time-dependent density functional theory in the linear-response regime and using the known structure of Au(102)(p-MBA)(44). The measured and calculated molar absorption coefficients in the NIR-vis region are comparable, within a factor of 2, in the absolute scale. Several characteristic features are observed in the absorption in the range of 1.5-3.5 eV. The onset of the electronic transitions in the mid-IR region is experimentally observed at 0.45 ± 0.05 eV which compares well with the lowest calculated transition at 0.55 eV. Vibrations in the ligand layer give rise to fingerprint IR features below the onset of low-energy metal-to-metal electronic transitions. Partial exchange of the p-MBA ligand to glutathione does not affect the onset of the electronic transitions, which indicates that the metal core of the cluster is not affected by the ligand exchange. The full spectroscopic characterization of the Au(102)(p-MBA)(44) reported here for the first time gives benchmarks for further studies of manipulation and functionalization of this nanocluster to various applications.
Proceedings of the National Academy of Sciences of the United States of America | 2014
Varpu Marjomäki; Tanja Lahtinen; Mari Martikainen; Jaakko Koivisto; Sami Malola; Kirsi Salorinne; Mika Pettersson; Hannu Häkkinen
Significance Development of precise protocols for accurate site-specific conjugation of monodisperse inorganic nanoparticles to large biomolecules and bionanoparticles is one of the challenges in contemporary bionanoscience and nanomedicine, providing new tools for bioimaging and tracking in biological systems. Here we report a success in labeling enteroviruses by atomically precise thiol-stabilized gold clusters with 1.5-nm metal cores that bind, via a covalent link, to cysteines that are close to the viral surface. It is shown that the infectivity of the viruses is not compromised by this labeling procedure. These advances allow for future investigations of the structure−function relations of enteroviruses and enterovirus-related virus-like particles, including their entry mechanisms into cells and uncoating in cellular endosomes. Development of precise protocols for accurate site-specific conjugation of monodisperse inorganic nanoparticles to biological material is one of the challenges in contemporary bionanoscience and nanomedicine. We report here a successful site-specific covalent conjugation of functionalized atomically monodisperse gold clusters with 1.5-nm metal cores to viral surfaces. Water-soluble Au102(para-mercaptobenzoic acid)44 clusters, functionalized by maleimide linkers to target cysteines of viral capsid proteins, were synthesized and conjugated to enteroviruses echovirus 1 and coxsackievirus B3. Quantitative analysis of transmission electron microscopy images and the known virus structures showed high affinity and mutual ordering of the bound gold clusters on the viral surface and a clear correlation between the clusters and the targeted cysteine sites close to the viral surface. Infectivity of the viruses was not compromised by loading of several tens of gold clusters per virus. These advances allow for future investigations of the structure−function relations of enteroviruses and enterovirus-related virus-like particles, including their entry mechanisms into cells and uncoating in cellular endosomes.
Journal of Physical Chemistry Letters | 2012
Jaakko Koivisto; Sami Malola; Chanaka Kumara; Amal Dass; Hannu Häkkinen; Mika Pettersson
Au144PET60 and Au144-xAgxPET60 (PET = SC2H4Ph, phenylethylthiolate, and 30 ≤ x ≤ 53) clusters were studied by optical spectroscopy and linear response time-dependent density functional theory. Spectra of thin dry films were measured in order to reveal the onset for electronic absorption. The optical gap of the Au144PET60 cluster was determined at 0.19 ± 0.01 eV, which agrees well with the computed energy for the first optical transition at 0.32 eV for a model cluster Au144(SH)60 when the line width of individual transitions is taken into account. The optical gaps for the Au144-xAgxPET60 alloy clusters were observed in a range of 0.12-0.26 eV, in good agreement with the calculations giving 0.16-0.36 eV for the lowest-energy optical transitions for corresponding Au144-xAgx(SH)60 models. This indicates that the gap is only moderately affected by doping Au with Ag. This work constitutes the first accurate determination of the fundamental spectroscopic gap of these compounds.
Analytical Chemistry | 2013
Kirsi Salorinne; Tanja Lahtinen; Jaakko Koivisto; Elina Kalenius; Maija Nissinen; Mika Pettersson; Hannu Häkkinen
Diffusion ordered NMR spectroscopy (DOSY) was used as an analytical tool to estimate the size of thiol-stabilized gold nanoclusters in solution, namely, phenylethanethiol (PET) stabilized Au25(PET)18, Au38(PET)24, and Au144(PET)60. This was achieved by determining the diffusion coefficient and hydrodynamic radius from solution samples that were confirmed to be monodispersed by electrospray ionization mass spectrometry. The average cluster diameters obtained by this technique were estimated to be 1.7, 2.2, and 3.1 nm for the Au25(PET)18, Au38(PET)24, and Au144(PET)60 nanoclusters, respectively, which were shown to agree well with the average diameters of the corresponding single crystal or theoretical structures reported in the literature. Consequently, the DOSY technique is demonstrated to be a potentially valuable nondestructive tool for characterization of nanoparticle mixtures and verifying the purity of product solutions.
ACS Nano | 2015
Satu Mustalahti; Pasi Myllyperkiö; Sami Malola; Tanja Lahtinen; Kirsi Salorinne; Jaakko Koivisto; Hannu Häkkinen; Mika Pettersson
Photophysical properties of a water-soluble cluster Au102(pMBA)44 (pMBA = para-mercaptobenzoic acid) are studied by ultrafast time-resolved mid-IR spectroscopy and density functional theory calculations in order to distinguish between molecular and metallic behavior. In the mid-IR transient absorption studies, visible or near-infrared light is used to electronically excite the sample, and the subsequent relaxation is monitored by studying the transient absorption of a vibrational mode in the ligands. Based on these studies, a complete picture of energy relaxation dynamics is obtained: (1) 0.5-1.5 ps electronic relaxation, (2) 6.8 ps vibrational cooling, (3) intersystem crossing from the lowest triplet state to the ground state with a time constant 84 ps, and (4) internal conversion to the ground state with a time constant of ∼3.5 ns. A remarkable finding based on this work is that a large cluster containing 102 metal atoms behaves like a small molecule in a striking contrast to a previously studied slightly larger Au144(SC2H4Ph)60 cluster, which shows relaxation typical for metallic particles. These results therefore establish that the transition between molecular and metallic behavior occurs between Au102 and Au144 species.
Journal of Physical Chemistry Letters | 2014
Jaakko Koivisto; Kirsi Salorinne; Satu Mustalahti; Tanja Lahtinen; Sami Malola; Hannu Häkkinen; Mika Pettersson
We have determined vibrational signatures and optical gap of the Au144(PET)60 (PET: phenylethylthiol, SC2H4Ph) nanocluster solvated in deuterated dichloromethane (DCM-D2, CD2Cl2) and in a single crystal. For crystals, solid-state (13)C NMR and X-ray diffraction were also measured. A revised value of 2200 cm(-1) (0.27 eV) was obtained for the optical gap in both phases. The vibrational spectra of solvated AU144(PET)60 closely resembles that of neat PET, while the crystalline-state spectrum exhibits significant inhomogeneous spectral broadening, frequency shifts, intensity transfer between vibrational modes, and an increase in the overtone and combination transition intensities. Spectral broadening was also observed in the (13)C NMR spectrum. Changes in the intensity are explained due to vibrational coupling of the normal modes induced by the crystal packing, and the vibrational broadening is caused by ligand-environment inhomogeneity in the crystal. This indicates a pseudocrystalline state where the cluster cores are arranged in periodic fashion, while the ligand-layer molecules between the cores form amorphous structures.
Journal of Physical Chemistry C | 2014
Satu Mustalahti; Pasi Myllyperkiö; Tanja Lahtinen; Kirsi Salorinne; Sami Malola; Jaakko Koivisto; Hannu Häkkinen; Mika Pettersson
Nanoscale | 2014
Kirsi Salorinne; Tanja Lahtinen; Sami Malola; Jaakko Koivisto; Hannu Häkkinen
Journal of Physical Chemistry C | 2016
Jaakko Koivisto; Xi Chen; Serena Donnini; Tanja Lahtinen; Hannu Häkkinen; Gerrit Groenhof; Mika Pettersson