Jaane Krüger

Phosphorus depletion in forest soils shapes bacterial communities towards phosphorus recycling systems

Phosphorus (P) is an important macronutrient for all biota on earth but similarly a finite resource. Microorganisms play on both sides of the fence as they effectively mineralize organic and solubilize precipitated forms of soil phosphorus but conversely also take up and immobilize P. Therefore, we analysed the role of microbes in two beech forest soils with high and low P content by direct sequencing of metagenomic deoxyribonucleic acid. For inorganic P solubilization, a significantly higher microbial potential was detected in the P-rich soil. This trait especially referred to Candidatus Solibacter usiatus, likewise one of the dominating species in the data sets. A higher microbial potential for efficient phosphate uptake systems (pstSCAB) was detected in the P-depleted soil. Genes involved in P starvation response regulation (phoB, phoR) were prevalent in both soils. This underlines the importance of effective phosphate (Pho) regulon control for microorganisms to use alternative P sources during phosphate limitation. Predicted genes were primarily harboured by Rhizobiales, Actinomycetales and Acidobacteriales.

Novel oligonucleotide primers reveal a high diversity of microbes which drive phosphorous turnover in soil

Phosphorus (P) is of central importance for cellular life but likewise a limiting macronutrient in numerous environments. Certainly microorganisms have proven their ability to increase the phosphorus bioavailability by mineralization of organic-P and solubilization of inorganic-P. On the other hand they efficiently take up P and compete with other biota for phosphorus. However the actual microbial community that is associated to the turnover of this crucial macronutrient in different ecosystems remains largely anonymous especially taking effects of seasonality and spatial heterogeneity into account. In this study seven oligonucleotide primers are presented which target genes coding for microbial acid and alkaline phosphatases (phoN, phoD), phytases (appA), phosphonatases (phnX) as well as the quinoprotein glucose dehydrogenase (gcd) and different P transporters (pitA, pstS). Illumina amplicon sequencing of soil genomic DNA underlined the high rate of primer specificity towards the respective target gene which usually ranged between 98% and 100% (phoN: 87%). As expected the primers amplified genes from a broad diversity of distinct microorganisms. Using DNA from a beech dominated forest soil, the highest microbial diversity was detected for the alkaline phosphatase (phoD) gene which was amplified from 15 distinct phyla respectively 81 families. Noteworthy the primers also allowed amplification of phoD from 6 fungal orders. The genes coding for acid phosphatase (phoN) and the quinoprotein glucose dehydrogenase (gcd) were amplified from 20 respectively 17 different microbial orders. In comparison the phytase and phosphonatase (appA, phnX) primers covered 13 bacterial orders from 2 different phyla respectively. Although the amplified microbial diversity was apparently limited both primers reliably detected all orders that contributed to the P turnover in the investigated soil as revealed by a previous metagenomic approach. Genes that code for microbial P transporter (pitA, pstS) were amplified from 13 respectively 9 distinct microbial orders. Accordingly the introduced primers represent a valuable tool for further analysis of the microbial community involved in the turnover of phosphorus in soils but most likely also in other environments.

Effect of multivalent cations, temperature and aging on soil organic matter interfacial properties

Environmental context The supramolecular structure and resulting physicochemical properties of soil organic matter (SOM) significantly control storage and buffer functions of soils, e.g. for nutrients, organic molecules and water. Multivalent cations, able to form complexes, are suggested to form inter- and intramolecular cross-links in SOM. At present, specific effects of the valence and type of cation on SOM properties are incompletely understood. We investigated changes in SOM interfacial properties, its ability to release mobile colloids in aqueous solutions and its sorption affinity towards organic chemicals in dependence on cation–SOM interactions, temperature and aging time. Abstract The present study aims to improve our understanding on the effect of multivalent cations, temperature treatment and isothermal aging time on interfacial soil organic matter (SOM) properties as major factors that modify its supramolecular structures. A sandy topsoil (LW) and a peat soil (SP) were enriched with Na, Ca or Al, or desalinated in a batch experiment, treated at 25, 40, 60 and 105°C and aged at constant temperature and humidity (20°C, 31% relative humidity). After aging for different periods, contact angles (CAs), sorption properties towards xenobiotics and properties of water dispersible colloids were determined. With increasing valence of the dominant cations fewer and larger colloids were observed, probably attributable to cation cross-links or enhanced aggregation caused by reduced surface charge. Al-enrichment of LW resulted in more abundant or more accessible sorption sites for hydrophobic xenobiotics. But in contrast to expectations, hydrophilic sorption as well as wettability was not significantly affected by the type of adsorbed cation. Increasing the temperature had a major effect on surface properties resulting in rising surface hydrophobisation with increasing solid–water CAs, decreasing surface O/C ratio and decreasing sorption of hydrophilic substances; whereas systematic temperature effects on water dispersible colloids and on hydrophobic sorption were not detected. Aging was found to increase the initial CA of the 25°C treatment and to increase the sorption of phenanthrene to LW for all treatment temperatures. We conclude that aging of SOM is a process that changes surface properties and approaches a new equilibrium state after a disturbance. The aging process may be significantly accelerated for samples treated at elevated temperatures.

Organic layers favor phosphorus storage and uptake by young beech trees (Fagus sylvatica L.) at nutrient poor ecosystems

AimsThe accumulation of organic layers in forests is linked to decreasing nutrient availability. Organic layers might represent a source of phosphorus (P) nutrition of trees in forests. Our aims were i) to test if the fate of P in a tree sapling-soil system differs between nutrient-poor and nutrient-rich sites, and ii) to assess the influence of organic layers on the fate of P in a tree sapling-soil system at either site.MethodsWe conducted a 33P labeling experiment of mesocosms of beech (Fagus sylvatica) saplings.ResultsRecovery of 33P in the organic layer was greater under nutrient-poor than under nutrient-rich conditions likely caused by the abundance of microorganisms and roots. Under nutrient-poor conditions, we found that the mobilization of P followed by efficient uptake promoted tree sapling growth if the organic layer was present. The presence of organic layers did not significantly influence P uptake by beech saplings under nutrient-rich conditions suggesting mechanisms of P mobilization in addition to organic matter mineralization.ConclusionsOur results highlight the importance of organic layers for P nutrition of young beech trees growing on nutrient-poor soils in temperate forest ecosystems. The role of organic layers should be considered for sustainable forest management.