Jacek Wierzchos

Chains of magnetite crystals in the meteorite ALH84001: Evidence of biological origin

The presence of magnetite crystal chains, considered missing evidence for the biological origin of magnetite in ALH84001 [Thomas-Keprta, K. L., Bazylinski, D. A., Kirschvink, J. L., Clemett, S. J., McKay, D. S., Wentworth, S. J., Vali, H., Gibson, E. K., Jr., & Romanek, C. S. (2000) Geochim. Cosmochim. Acta 64, 4049–4081], is demonstrated by high-power stereo backscattered scanning electron microscopy. Five characteristics of such chains (uniform crystal size and shape within chains, gaps between crystals, orientation of elongated crystals along the chain axis, flexibility of chains, and a halo that is a possible remnant of a membrane around chains), observed or inferred to be present in magnetotactic bacteria but incompatible with a nonbiological origin, are shown to be present. Although it is unlikely that magnetotactic bacteria were ever alive in ALH84001, decomposed remains of such organisms could have been deposited in cracks in the rock while it was still on the surface on Mars.

Microstructural Characterization of Cyanobacterial Mats from the McMurdo Ice Shelf, Antarctica

ABSTRACT The three-dimensional structures of two types of cyanobacterium-dominated microbial mats from meltwater ponds on the McMurdo Ice Shelf were as determined by using a broad suite of complementary techniques, including optical and fluorescence microscopy, confocal scanning laser microscopy, scanning electron microscopy with back-scattered electron-imaging mode, low-temperature scanning electron microscopy, and microanalyitical X-ray energy dispersive spectroscopy. By using a combination of the different in situ microscopic techniques, the Antarctic microbial mats were found to be structures with vertical stratification of groups of cyanobacteria and mineral sediments, high contents of extracellular polymeric substances, and large void spaces occupied by water. In cyanobacterium-rich layers, heterocystous nostocalean and nonheterocystous oscillatorialean taxa were the most abundant taxa and appeared to be intermixed with fine-size deposits of epicellular silica and calcium carbonate. Most of the cyanobacterial filaments had similar orientations in zones without sediment particles, but thin filaments were tangled among thicker filaments. The combination of the microscopic techniques used showed the relative positions of biological and mineral entities within the microbial mats and enabled some speculation about their interactions.

In situ evaluation of the biodeteriorating action of microorganisms and the effects of biocides on carbonate rock of the Jeronimos Monastery (Lisbon)

The biodeterioration effects of microorganisms colonizing the cloister terrace wall of the Jeronimos Monastery (Lisbon) were evaluated using several microscopy techniques that allow the in situ examination of lithobiontic communities. The techniques applied were: scanning electron microscopy with back-scattered electron imaging (SEM-BSE), low temperature scanning electron microscopy (LTSEM), transmission electron microscopy (TEM) and an X-ray energy dispersive spectroscopy (EDS) microanalytical system. The stone was seen to be colonized by different lichens and microorganisms and lichen thalli of Thyrea, Aspicilia, Verrucaria and Caloplaca were identified. Cyanobacteria were frequently observed close-by, as single cells or colonies and heterotrophic bacteria were also found among these. The lithobiontic community showed biogeophysical and biogeochemical effects on the substrate. Cyanobacteria produced bowl- or pear-shaped cavities. Using SEM-BSE and TEM we were able to observe a mineral network structure adjacent to the cyanobacterial wall that might be related to calcium biomobilization processes. Neoformation of biogenic carbonate was detected in thalli of the lichen Thyrea. This information was complemented by observing details of the response of these biological components to the biocidal agents, ALGOPHASE®, METATIN® and PREVENTOL R80®. After treatment, Thyrea remained on the stone, although ultrastructural alterations were observed in the photobiont. When the effects of the biocides on the ultrastructure of the cyanobacteria were analyzed, ALGOPHASE® proved to be the least efficient, while PREVENTOL R80® led to the complete disorganization of the prokaryotic cyanobacterial cell. These results point to the importance of evaluating biodeterioration processes and possible treatment measures without extracting the microorganisms from their microhabitat.

Hygroscopic Salts and the Potential for Life on Mars

Hygroscopic salts have been detected in soils in the northern latitudes of Mars, and widespread chloride-bearing evaporitic deposits have been detected in the southern highlands. The deliquescence of hygroscopic minerals such as chloride salts could provide a local and transient source of liquid water that would be available for microorganisms on the surface. This is known to occur in the Atacama Desert, where massive halite evaporites have become a habitat for photosynthetic and heterotrophic microorganisms that take advantage of the deliquescence of the salt at certain relative humidity (RH) levels. We modeled the climate conditions (RH and temperature) in a region on Mars with chloride-bearing evaporites, and modeled the evolution of the water activity (a(w)) of the deliquescence solutions of three possible chloride salts (sodium chloride, calcium chloride, and magnesium chloride) as a function of temperature. We also studied the water absorption properties of the same salts as a function of RH. Our climate model results show that the RH in the region with chloride-bearing deposits on Mars often reaches the deliquescence points of all three salts, and the temperature reaches levels above their eutectic points seasonally, in the course of a martian year. The a(w) of the deliquescence solutions increases with decreasing temperature due mainly to the precipitation of unstable phases, which removes ions from the solution. The deliquescence of sodium chloride results in transient solutions with a(w) compatible with growth of terrestrial microorganisms down to 252 K, whereas for calcium chloride and magnesium chloride it results in solutions with a(w) below the known limits for growth at all temperatures. However, taking the limits of a(w) used to define special regions on Mars, the deliquescence of calcium chloride deposits would allow for the propagation of terrestrial microorganisms at temperatures between 265 and 253 K, and for metabolic activity (no growth) at temperatures between 253 and 233 K.

Comparative analysis of the microbial communities inhabiting halite evaporites of the Atacama Desert

SUMMARY Molecular biology and microscopy techniques were used to characterize the microbial communities inside halite evaporites from different parts of the Atacama Desert. Denaturing gradient gel electrophoresis (DGGE) analysis revealed that the evaporite rocks harbor communities predominantly made up of cyanobacteria, along with heterotrophic bacteria and archaea. Different DGGE profiles were obtained for the different sites, with the exception of the cyanobacterial profile, in which only one phylotype was detected across the three sites examined. Chroococcidiopsis-like cells were the only cyanobacterial components of the rock samples, although the phylogenetic study revealed their closer genetic affinity to Halothece genera. Gene sequences of the heterotrophic bacteria and archaea indicated their proximity to microorganisms found in other hypersaline environments. Microorganisms colonizing these halites formed microbial aggregates in the pore spaces between halite crystals, where microbial interactions occur. In this exceptional, salty, porous halite rock habitat, microbial consortia with a community structure probably conditioned by the environmental conditions occupy special microhabitats with physical and chemical properties that promote their survival.

Morphological and chemical features of bioweathered granitic biotite induced by lichen activity

To study the physico-chemical activity of lichens on micaceous components of granitic rocks, samples covered by thalli of Parmelia conspersa (Ehrht) Ach. and Aspicilia intermutans (Nyl.) Arn. were collected and examined with Scanning Electron Microscopy (SEM) equipped with a Back Scattered Electron (BSE) detector and an Energy Dispersive Spectroscopy (EDS) microanalytical system. The bio-physical activity of both lichen species leads to a deep alteration of biotite, which results in detachment, separation and exfoliation of biotite plates. Chemically, the bioweathering process of biotite in the lichenmineral contact zone involves considerable depletion of potassium (K) from interlayer positions in biotite and removal of several elements, corresponding to a 9.7% loss in matter. The sequence of the loss of elements is: K+ » Fetot > Ti4+ ≅ Mg2+. There are also some gains in the order: Ca2+ > Na+ » Al3+ > Si4+ attributed to dissolution of co-existing Ca and Na rich minerals. Geochemical mass balance results suggest the transformation of K-rich biotite to scarcely altered biotite interstratified with a biotite-vermiculite intermediate phase in the lichen bioweathered contact zones.

Astrobiology through the Ages of Mars: The Study of Terrestrial Analogues to Understand the Habitability of Mars

Mars has undergone three main climatic stages throughout its geological history, beginning with a water-rich epoch, followed by a cold and semi-arid era, and transitioning into present-day arid and very cold desert conditions. These global climatic eras also represent three different stages of planetary habitability: an early, potentially habitable stage when the basic requisites for life as we know it were present (liquid water and energy); an intermediate extreme stage, when liquid solutions became scarce or very challenging for life; and the most recent stage during which conditions on the surface have been largely uninhabitable, except perhaps in some isolated niches. Our understanding of the evolution of Mars is now sufficient to assign specific terrestrial environments to each of these periods. Through the study of Mars terrestrial analogues, we have assessed and constrained the habitability conditions for each of these stages, the geochemistry of the surface, and the likelihood for the preservation of organic and inorganic biosignatures. The study of these analog environments provides important information to better understand past and current mission results as well as to support the design and selection of instruments and the planning for future exploratory missions to Mars.

Microbial colonization of halite from the hyper-arid Atacama Desert studied by Raman spectroscopy

The hyper-arid core of the Atacama Desert (Chile) is the driest place on Earth and is considered a close analogue to the extremely arid conditions on the surface of Mars. Microbial life is very rare in soils of this hyper-arid region, and autotrophic micro-organisms are virtually absent. Instead, photosynthetic micro-organisms have successfully colonized the interior of halite crusts, which are widespread in the Atacama Desert. These endoevaporitic colonies are an example of life that has adapted to the extreme dryness by colonizing the interior of rocks that provide enhanced moisture conditions. As such, these colonies represent a novel example of potential life on Mars. Here, we present non-destructive Raman spectroscopical identification of these colonies and their organic remnants. Spectral signatures revealed the presence of UV-protective biomolecules as well as light-harvesting pigments pointing to photosynthetic activity. Compounds of biogenic origin identified within these rocks differed depending on the origins of specimens from particular areas in the desert, with differing environmental conditions. Our results also demonstrate the capability of Raman spectroscopy to identify biomarkers within rocks that have a strong astrobiological potential.

Exploring the physiological state of continental Antarctic endolithic microorganisms by microscopy

In this microscopy study, we show that microorganisms comprising many endolithic communities of the McMurdo Dry Valleys of Antarctica appear in different physiological states. Live/dead microbial fluorescence stains were used to identify the state of microorganisms in the biofilms. The ultrastructures of these microorganisms were then characterized by transmission electron microscopy. Cyanobacteria were associated with heterotrophic bacterial cells, while fungal cells were free-living or formed partners with green alga as lichens. The extracellular polymeric substances, in which the endolithic microorganisms were embedded, formed an integral part of the biofilms observed. Extracellular polymeric substances probably play a significant role in nutrient interactions and protection of microorganisms from the environmental conditions outside the film. Living, moribund, dormant and dead microorganisms shared this microhabitat. The ecological impacts of the observed physiological dynamics are discussed.

Ecology of endolithic lichens colonizing granite in continental Antarctica

In this study, the symbiont cells of several endolithic lichens colonizing granite in continental Antarctica and the relationships they have with the abiotic environment were analyzed in situ, in order to characterize the microecosystems integrating these lichens, from a microecological perspective. Mycobiont and photobiont cells, the majority classified as living by fluoresecent vitality testing, were observed distributed through the fissures of the granite. The fact that extracellular polymeric substances were commonly observed close to these cells and the features of these compounds, suggest a certain protective role for these substances against the harsh conditions of the environment. Different chemical, physical and biological relationships take place within the endo- lithic biofilms where the lichens are found, possibly affecting also the survival and distribution of these organisms. The alteration of bedrock minerals and synthesis of biominerals in the proximity of these lichens gives rise to different chemical microenvironments and suggests their participation in mineral nutrient cycling.