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Dive into the research topics where Jacob S. Kanady is active.

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Featured researches published by Jacob S. Kanady.


Science | 2011

A Synthetic Model of the Mn3Ca Subsite of the Oxygen-Evolving Complex in Photosystem II

Jacob S. Kanady; Emily Y. Tsui; Michael W. Day; Theodor Agapie

A model compound sheds light on the puzzling role of calcium in the metal cluster that oxidizes water during photosynthesis. Within photosynthetic organisms, the oxygen-evolving complex (OEC) of photosystem II generates dioxygen from water using a catalytic Mn4CaOn cluster (n varies with the mechanism and nature of the intermediate). We report here the rational synthesis of a [Mn3CaO4]6+ cubane that structurally models the trimanganese-calcium–cubane subsite of the OEC. Structural and electrochemical comparison between Mn3CaO4 and a related Mn4O4 cubane alongside characterization of an intermediate calcium-manganese multinuclear complex reveals potential roles of calcium in facilitating high oxidation states at manganese and in the assembly of the biological cluster.


Inorganic Chemistry | 2013

Synthetic Cluster Models of Biological and Heterogeneous Manganese Catalysts for O2 Evolution

Emily Y. Tsui; Jacob S. Kanady; Theodor Agapie

Artificial photosynthesis has emerged as an important strategy toward clean and renewable fuels. Catalytic oxidation of water to O2 remains a significant challenge in this context. A mechanistic understanding of currently known heterogeneous and biological catalysts at a molecular level is highly desirable for fundamental reasons as well as for the rational design of practical catalysts. This Award Article discusses recent efforts in synthesizing structural models of the oxygen-evolving complex of photosystem II. These structural motifs are also related to heterogeneous mixed-metal oxide catalysts. A stepwise synthetic methodology was developed toward achieving the structural complexity of the targeted active sites. A geometrically restricted multinucleating ligand, but with labile coordination modes, was employed for the synthesis of low-oxidation-state trimetallic species. These precursors were elaborated to site-differentiated tetrametallic complexes in high oxidation states. This methodology has allowed for structure-reactivity studies that have offered insight into the effects of different components of the clusters. Mechanistic aspects of oxygen-atom transfer and incorporation from water have been interrogated. Significantly, a large and systematic effect of redox-inactive metals on the redox properties of these clusters was discovered. With the pKa value of the redox-inactive metal-aqua complex as a measure of the Lewis acidity, structurally analogous clusters display a linear dependence between the reduction potential and acidity; each pKa unit shifts the potential by ca. 90 mV. Implications for the function of the biological and heterogeneous catalysts are discussed.


Journal of the American Chemical Society | 2013

Oxygen Atom Transfer and Oxidative Water Incorporation in Cuboidal Mn3MOn Complexes Based on Synthetic, Isotopic Labeling, and Computational Studies

Jacob S. Kanady; Jose L. Mendoza-Cortes; Emily Y. Tsui; Robert J. Nielsen; William A. Goddard; Theodor Agapie

The oxygen-evolving complex (OEC) of photosystem II contains a Mn(4)CaO(n) catalytic site, in which reactivity of bridging oxidos is fundamental to OEC function. We synthesized structurally relevant cuboidal Mn(3)MO(n) complexes (M = Mn, Ca, Sc; n = 3,4) to enable mechanistic studies of reactivity and incorporation of μ(3)-oxido moieties. We found that Mn(IV)(3)CaO(4) and Mn(IV)(3)ScO(4) were unreactive toward trimethylphosphine (PMe(3)). In contrast, our Mn(III)(2)Mn(IV)(2)O(4) cubane reacts with this phosphine within minutes to generate a novel Mn(III)(4)O(3) partial cubane plus Me(3)PO. We used quantum mechanics to investigate the reaction paths for oxygen atom transfer to phosphine from Mn(III)(2)Mn(IV)(2)O(4) and Mn(IV)(3)CaO(4). We found that the most favorable reaction path leads to partial detachment of the CH(3)COO(-) ligand, which is energetically feasible only when Mn(III) is present. Experimentally, the lability of metal-bound acetates is greatest for Mn(III)(2)Mn(IV)(2)O(4). These results indicate that even with a strong oxygen atom acceptor, such as PMe(3), the oxygen atom transfer chemistry from Mn(3)MO(4) cubanes is controlled by ligand lability, with the Mn(IV)(3)CaO(4) OEC model being unreactive. The oxidative oxide incorporation into the partial cubane, Mn(III)(4)O(3), was observed experimentally upon treatment with water, base, and oxidizing equivalents. (18)O-labeling experiments provided mechanistic insight into the position of incorporation in the partial cubane structure, consistent with mechanisms involving migration of oxide moieties within the cluster but not consistent with selective incorporation at the site available in the starting species. These results support recent proposals for the mechanism of the OEC, involving oxido migration between distinct positions within the cluster.


Journal of the American Chemical Society | 2014

Toward models for the full oxygen-evolving complex of photosystem II by ligand coordination to lower the symmetry of the Mn3CaO4 cubane: demonstration that electronic effects facilitate binding of a fifth metal.

Jacob S. Kanady; Po-Heng Lin; Kurtis M. Carsch; Robert J. Nielsen; Michael K. Takase; William A. Goddard; Theodor Agapie

Synthetic model compounds have been targeted to benchmark and better understand the electronic structure, geometry, spectroscopy, and reactivity of the oxygen-evolving complex (OEC) of photosystem II, a low-symmetry Mn4CaOn cluster. Herein, low-symmetry MnIV3GdO4 and MnIV3CaO4 cubanes are synthesized in a rational, stepwise fashion through desymmetrization by ligand substitution, causing significant cubane distortions. As a result of increased electron richness and desymmetrization, a specific μ3-oxo moiety of the Mn3CaO4 unit becomes more basic allowing for selective protonation. Coordination of a fifth metal ion, Ag+, to the same site gives a Mn3CaAgO4 cluster that models the topology of the OEC by displaying both a cubane motif and a “dangler” transition metal. The present synthetic strategy provides a rational roadmap for accessing more accurate models of the biological catalyst.


Chemical Science | 2013

Role of oxido incorporation and ligand lability in expanding redox accessibility of structurally related Mn4 clusters

Jacob S. Kanady; Rosalie Tran; Jamie A. Stull; Luo Lu; Troy A. Stich; Michael W. Day; Junko Yano; R. David Britt; Theodor Agapie

Photosystem II supports four manganese centers through nine oxidation states from manganese(II) during assembly through to the most oxidized state before O2 formation and release. The protein-based carboxylate and imidazole ligands allow for significant changes of the coordination environment during the incorporation of hydroxido and oxido ligands upon oxidation of the metal centers. We report the synthesis and characterization of a series of tetramanganese complexes in four of the six oxidation states from MnII3MnIII to MnIII2 MnIV2 with the same ligand framework (L) by incorporating four oxido ligands. A 1,3,5-triarylbenzene framework appended with six pyridyl and three alkoxy groups was utilized along with three acetate anions to access tetramanganese complexes, Mn4O x , with x = 1, 2, 3, and 4. Alongside two previously reported complexes, four new clusters in various states were isolated and characterized by crystallography, and four were observed electrochemically, thus accessing the eight oxidation states from MnII4 to MnIIIMnIV3. This structurally related series of compounds was characterized by EXAFS, XANES, EPR, magnetism, and cyclic voltammetry. Similar to the ligands in the active site of the protein, the ancillary ligand (L) is preserved throughout the series and changes its binding mode between the low and high oxido-content clusters. Implications for the rational assembly and properties of high oxidation state metal-oxido clusters are presented.


Inorganic Chemistry | 2015

Ca K-Edge XAS as a Probe of Calcium Centers in Complex Systems

Vlad Martin-Diaconescu; Marcello Gennari; Bertrand Gerey; Emily Y. Tsui; Jacob S. Kanady; Rosalie Tran; Jacques Pécaut; Dimitrios Maganas; Vera Krewald; Eric Gouré; Carole Duboc; Junko Yano; Theodor Agapie; Marie-Noëlle Collomb; Serena DeBeer

Herein, Ca K-edge X-ray absorption spectroscopy (XAS) is developed as a means to characterize the local environment of calcium centers. The spectra for six, seven, and eight coordinate inorganic and molecular calcium complexes were analyzed and determined to be primarily influenced by the coordination environment and site symmetry at the calcium center. The experimental results are closely correlated to time-dependent density functional theory (TD-DFT) calculations of the XAS spectra. The applicability of this methodology to complex systems was investigated using structural mimics of the oxygen-evolving complex (OEC) of PSII. It was found that Ca K-edge XAS is a sensitive probe for structural changes occurring in the cubane heterometallic cluster due to Mn oxidation. Future applications to the OEC are discussed.


Structural Dynamics | 2017

Soft x-ray absorption spectroscopy of metalloproteins and high-valent metal-complexes at room temperature using free-electron lasers

Markus Kubin; Jan Kern; Sheraz Gul; Thomas Kroll; Ruchira Chatterjee; Heike Löchel; Franklin Fuller; Raymond G. Sierra; Wilson Quevedo; Christian Weniger; Jens Rehanek; Anatoly Firsov; Hartawan Laksmono; Clemens Weninger; Roberto Alonso-Mori; Dennis Nordlund; Benedikt Lassalle-Kaiser; James M. Glownia; J. Krzywinski; Stefan Moeller; J. J. Turner; Michael P. Minitti; Georgi L. Dakovski; Sergey Koroidov; Anurag Kawde; Jacob S. Kanady; Emily Y. Tsui; Sandy Suseno; Zhiji Han; Ethan Hill

X-ray absorption spectroscopy at the L-edge of 3d transition metals provides unique information on the local metal charge and spin states by directly probing 3d-derived molecular orbitals through 2p-3d transitions. However, this soft x-ray technique has been rarely used at synchrotron facilities for mechanistic studies of metalloenzymes due to the difficulties of x-ray-induced sample damage and strong background signals from light elements that can dominate the low metal signal. Here, we combine femtosecond soft x-ray pulses from a free-electron laser with a novel x-ray fluorescence-yield spectrometer to overcome these difficulties. We present L-edge absorption spectra of inorganic high-valent Mn complexes (Mn ∼ 6–15 mmol/l) with no visible effects of radiation damage. We also present the first L-edge absorption spectra of the oxygen evolving complex (Mn4CaO5) in Photosystem II (Mn < 1 mmol/l) at room temperature, measured under similar conditions. Our approach opens new ways to study metalloenzymes under functional conditions.


Chemical Communications | 2011

Trinuclear first row transition metal complexes of a hexapyridyl, trialkoxy 1,3,5-triarylbenzene ligand

Emily Y. Tsui; Jacob S. Kanady; Michael W. Day; Theodor Agapie


Archive | 2015

Oxygen-Evolving Complex of Photosystem II: Insights from Computation and Synthetic Models

Jacob S. Kanady; Jose L. Mendoza-Cortes; William A. Goddard; Theodor Agapie


Archive | 2014

Strategies for synthesizing Mn_4CaOn models relevant to biological water oxidation

Jacob S. Kanady; Emily Y. Tsui; Po-Heng Lin; Theodor Agapie

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Theodor Agapie

California Institute of Technology

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Emily Y. Tsui

California Institute of Technology

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Michael W. Day

California Institute of Technology

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William A. Goddard

California Institute of Technology

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Junko Yano

Lawrence Berkeley National Laboratory

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Po-Heng Lin

California Institute of Technology

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Robert J. Nielsen

California Institute of Technology

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Rosalie Tran

Lawrence Berkeley National Laboratory

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