Jacques Panfili

A global review of the cosmopolitan flathead mullet Mugil cephalus Linnaeus 1758 (Teleostei: Mugilidae), with emphasis on the biology, genetics, ecology and fisheries aspects of this apparent species complex

This study reviews published information on Mugil cephalus from around the world, with recent genetic studies indicating that the flathead mullet may indeed be a species complex. Disciplines that are covered range from the taxonomy, genetics and systematics, through a variety of biological and ecological attributes, to biomarker and fisheries studies. The eurytopic nature of M. cephalus is emphasized, with the migratory life history covering a succession of very different aquatic environments (e.g. rivers, estuaries, coastal lakes/lagoons, marine littoral, open ocean), each of which is occupied for varying lengths of time, depending on the population characteristics within a region and the life-history stage of the species. Interpretation of these movements over time has been greatly enhanced by the use of otolith micro-chemistry which has enabled scientists to map out the different habitats occupied by individual fish at the different life stages. The range of physico-chemical attributes within these environments necessitates a wide tolerance to differing conditions, especially with regard to salinity, turbidity, dissolved oxygen and temperature, all of which are discussed in this review. The importance of M. cephalus to the ecological functioning of coastal systems is emphasized, as well as the pivotal role that this species fulfills in fisheries in some parts of the world. The parasites range from internal trematode and cestode infestations, to external branchyuran and copepod parasites, which use M. cephalus as either an intermediate or final host. The value of the flathead mullet as a biomarker for the monitoring of the health of coastal habitats is discussed, as well as its potential as an indicator or sentinel species for certain ecosystems.

Seasonality in the deep sea and tropics revisited: what can otoliths tell us?

The accepted idea that fish otoliths from supposedly aseasonal environments, such as the deep sea and tropics, do not present seasonal growth increments is questioned and re-evaluated. The main seasonal fluctuation in deep seas is a result of the transfer of organic material from the productive upper layers to the abyssal depths. There is some evidence for seasonal patterns of otolith growth, although the validation of seasonal structures is limited owing to the difficulties inherent in deep-water studies. Tropical regions have an extremely high diversity of aquatic environments but in fact very few are aseasonal, and almost all areas have strong hydrological seasons, mainly annual, interacting with temperature variations. These climatic fluctuations have undoubtedly an effect on otolith growth, therefore leading to a succession of different incremental zones. The lack of previous knowledge on this impact of seasonality is probably a result of the previous low level of exploitation or economic interest of target species, and consequently the absence of age-based assessments. This trend has now changed possibly as a result of the increased exploitation of the resources, and to the greater involvement of international and national fishery management bodies. The number of studies showing apparent or validated seasonal marks has recently increased for these environments.

Fluctuating asymmetry in fish otoliths and heterozygosity in stressful estuarine environments (West Africa)

Fluctuating asymmetry (FA) is assumed to reflect the developmental instability caused by environmental or genetic stress. Fish otoliths represent a very good tool for investigating the consequence of different effects on FA. Otolith FA analysis, coupled with genetic analysis, has been undertaken on two common West African estuarine species, Ethmalosa fimbriata (EFI) and Sarotherodon melanotheron (SME), in two neighbouring estuaries, in order to highlight the impact of salinity on developmental stability. The Gambia estuary has a normal functioning and the Saloum estuary is inverse (saltier waters in the upper river), reaching extremely high salinities (>100 psu) and constituting severe environmental stress. Five sub-populations of EFI and six of SME were studied along a salinity gradient. The differences between right and left otoliths were estimated with image processing by measuring five dimensions (area, perimeter, diameter, rostrum and posterior radii). Analyses of genetic differentiation at three EPIC and one anonymous nuclear gene loci for EFI and six polymorphic enzymatic loci for SME were carried out to measure the level of heterozygosity. Absolute FA in all otolith traits examined was unaffected by gender but increased significantly with fish size. Size-corrected absolute FA did not show any significant difference among sites differing largely in salinity, although a higher asymmetry in otolith area was recorded in the saltiest site. These findings suggest that otolith asymmetry is a poor indicator of osmotic stress. The individual heterozygosity level did not seem to have an effect on otolith FA for either species, even though a slight correlation appeared with otolith area or perimeter. Otolith FA cannot be considered to be a useful indicator for estimating changes linked with environmental or genetic stress in these estuaries.

Otolith Microstructure in Tropical Fish

This chapter focuses on the fine scale microstructure of otoliths, the details of its formation and the biological information stored within the structures. The examination of otolith microstructure can reveal many different aspects of any individual fish’s life events, beyond the information stored as daily incremental deposit of the structures and their respective accretion rates. In tropical environments, and specifically in reef areas, the most singular structure within the otolith is the settlement mark corresponding for some species to the change of habitat between the pelagic and demersal environments (e.g., Thorrold & Milicich 1990, Wilson & McCormick 1997, 1999, McCormick et al. 2002). Such specific marks can be relevant for managers if they want information on the presence of a settlement phase for a species or the duration of the pelagic stage. Nevertheless, the treatment of such information often implies the analysis of the daily increments (see Sponaugle, Chapter 4, this volume).

Spatio-temporal isotopic signatures (δ13C and δ15N) reveal that two sympatric West African mullet species do not feed on the same basal production sources

Potential trophic competition between two sympatric mullet species, Mugil cephalus and Mugil curema, was explored in the hypersaline estuary of the Saloum Delta (Senegal) using δ(13) C and δ(15) N composition of muscle tissues. Between species, δ(15) N compositions were similar, suggesting a similar trophic level, while the difference in δ(13) C compositions indicated that these species did not feed from exactly the same basal production sources or at least not in the same proportions. This result provides the first evidence of isotopic niche segregation between two limno-benthophageous species belonging to the geographically widespread, and often locally abundant, Mugilidae family.

elementr: An R package for reducing elemental data from LA‐ICPMS analysis of biological calcified structures

1. Elemental analysis of biological calcified structures (e.g. fish otoliths, mollusc shelves, coral skeletons or fish and shark bones) provides invaluable information regarding ecological processes for many aquatic species. Despite this importance, the reduction of the raw data obtained through Laser-ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICPMS) (i.e. the conversion of the machine raw signal into elemental concentrations) remains a challenge as the tools developed so far for carrying out this task have important limitations for aquatic ecologists. 2. Here, we introduce the elementr R-package which provides a handy, reliable and transparent way to reduce elemental data acquired from spot or transect LA-ICPMS analysis of biological calcified structures. This free and open-source software, implemented based on state-of-the-art literature, handles data from both standards and samples, allowing fast and simultaneous calculations of concentration for any chemical element, correction for potential machine drift, and realignment and averaging for sample replicates when needed. 3. The major attributes of elementr are: (i) its user-friendly graphical interface which provides widgets to set all the reduction settings (i.e. no programming skills are required to run it), (ii) its reactivity whereby the software continuously observes any setting change made by the user, re-calculates and displays all updated results, allowing therefore users to visually check the validity of their settings and to tune them if needed and (iii) an object oriented underlying that facilitates subsequent handling of LA-ICPMS data in R. 4. Despite the elementr design being most suited to the needs of aquatic ecologists, its use could be broadened to other research fields (i.e. geology, material engineering) due to its flexibility. Moreover, the open-source approach used for programming this software allows its expansion in order to refine calculation procedures or to add new functionalities.

Slow growth of the overexploited milk shark Rhizoprionodon acutus affects its sustainability in West Africa.

Age and growth of Rhizoprionodon acutus were estimated from vertebrae age bands. From December 2009 to November 2010, 423 R. acutus between 37 and 112 cm total length (LT ) were sampled along the Senegalese coast. Marginal increment ratio was used to check annual band deposition. Three growth models were adjusted to the length at age and compared using Akaikes information criterion. The Gompertz growth model with estimated size at birth appeared to be the best and resulted in growth parameters of L∞ = 139.55 (LT ) and K = 0.17 year(-1) for females and L∞ = 126.52 (LT ) and K = 0.18 year(-1) for males. The largest female and male examined were 8 and 9 years old, but the majority was between 1 and 3 years old. Ages at maturity estimated were 5.8 and 4.8 years for females and males, respectively. These results suggest that R. acutus is a slow-growing species, which render the species particularly vulnerable to heavy fishery exploitation. The growth parameters estimated in this study are crucial for stock assessments and for demographic analyses to evaluate the sustainability of commercial harvests.