Jakob Fahr

Investigating the zoonotic origin of the West African Ebola epidemic

The severe Ebola virus disease epidemic occurring in West Africa stems from a single zoonotic transmission event to a 2‐year‐old boy in Meliandou, Guinea. We investigated the zoonotic origins of the epidemic using wildlife surveys, interviews, and molecular analyses of bat and environmental samples. We found no evidence for a concurrent outbreak in larger wildlife. Exposure to fruit bats is common in the region, but the index case may have been infected by playing in a hollow tree housing a colony of insectivorous free‐tailed bats (Mops condylurus). Bats in this family have previously been discussed as potential sources for Ebola virus outbreaks, and experimental data have shown that this species can survive experimental infection. These analyses expand the range of possible Ebola virus sources to include insectivorous bats and reiterate the importance of broader sampling efforts for understanding Ebola virus ecology.

A framework for the study of zoonotic disease emergence and its drivers: spillover of bat pathogens as a case study

Many serious emerging zoonotic infections have recently arisen from bats, including Ebola, Marburg, SARS-coronavirus, Hendra, Nipah, and a number of rabies and rabies-related viruses, consistent with the overall observation that wildlife are an important source of emerging zoonoses for the human population. Mechanisms underlying the recognized association between ecosystem health and human health remain poorly understood and responding appropriately to the ecological, social and economic conditions that facilitate disease emergence and transmission represents a substantial societal challenge. In the context of disease emergence from wildlife, wildlife and habitat should be conserved, which in turn will preserve vital ecosystem structure and function, which has broader implications for human wellbeing and environmental sustainability, while simultaneously minimizing the spillover of pathogens from wild animals into human beings. In this review, we propose a novel framework for the holistic and interdisciplinary investigation of zoonotic disease emergence and its drivers, using the spillover of bat pathogens as a case study. This study has been developed to gain a detailed interdisciplinary understanding, and it combines cutting-edge perspectives from both natural and social sciences, linked to policy impacts on public health, land use and conservation.

Activity patterns and habitat preferences of insectivorous bats in a West African forest-savanna mosaic

We studied activity patterns and habitat use by insectivorous bats in Comoe National Park, Ivory Coast. Bat foraging activity was quantified along five transects representing three different habitat types using acoustic monitoring and captures with mist nets and harp traps. Aerial insect abundance was assessed using a light trap; in addition shrub and tree arthropods were sampled. Bat activity was significantly and positively related to insect availability and ambient temperature, whereas increased visibility of the moon had a negative influence on flight activity. Together, these factors best explained both total bat activity and activity of bats hunting in open space and edge habitats. The interaction between temperature and light intensity was the best predictor of activity by species foraging in obstacle-rich forest habitats, however, the regression model had a low predictive value. Overall, a large proportion ( c . 50%) of the variation in bat activity appeared to be a consequence of transect- and/or habitat-specific influences. We found a significant non-linear relationship between the activity of QCF (quasi-constant frequency) and FM–QCF (frequency modulated – quasi-constant frequency) bats and the phase of the moon, with lowest levels of activity occurring near full moon. We interpret this lunar-phobic behaviour as a reflection of a higher predation risk during moonlit periods. For FM (steep frequency modulated) and CF (constant frequency) bats, no significant correlation was found, although there was a trend suggesting that these bats at least were not negatively affected by bright moonlight. Foraging activity of bats was positively correlated with the abundance of atympanate moths; however, no such correlation was found for tympanate moths.

High diversity of West African bat malaria parasites and a tight link with rodent Plasmodium taxa

Significance Understanding the evolution of malaria parasites and their phylogenetic context is key to understanding this important human disease. We report an unexpected high diversity of malaria parasite genera in bats from West African forest ecosystems. Two lineages are closely related to Plasmodium parasites from rodents, which are common laboratory model systems, and the results are consistent with switches between these hosts over their evolutionary history. Bats are considered important reservoir hosts for many pathogens, particularly viruses, and have unusually high immunological tolerances. The abundant malaria parasite infections are consistent with this exceptional immunology and suggest that in bats the parasites repeatedly evolved life cycles away from disease-causing replication in red blood cells to less pathogenic propagation in liver tissue. As the only volant mammals, bats are captivating for their high taxonomic diversity, for their vital roles in ecosystems—particularly as pollinators and insectivores—and, more recently, for their important roles in the maintenance and transmission of zoonotic viral diseases. Genome sequences have identified evidence for a striking expansion of and positive selection in gene families associated with immunity. Bats have also been known to be hosts of malaria parasites for over a century, and as hosts, they possess perhaps the most phylogenetically diverse set of hemosporidian genera and species. To provide a molecular framework for the study of these parasites, we surveyed bats in three remote areas of the Upper Guinean forest ecosystem. We detected four distinct genera of hemosporidian parasites: Plasmodium, Polychromophilus, Nycteria, and Hepatocystis. Intriguingly, the two species of Plasmodium in bats fall within the clade of rodent malaria parasites, indicative of multiple host switches across mammalian orders. We show that Nycteria species form a very distinct phylogenetic group and that Hepatocystis parasites display an unusually high diversity and prevalence in epauletted fruit bats. The diversity and high prevalence of novel lineages of chiropteran hemosporidians underscore the exceptional position of bats among all other mammalian hosts of hemosporidian parasites and support hypotheses of pathogen tolerance consistent with the exceptional immunology of bats.

Phylogeography and predicted distribution of African-Arabian and Malagasy populations of giant mastiff bats, Otomops spp. (Chiroptera: Molossidae)

ABSTRACT Otomops martiensseni is sparsely distributed throughout sub-Saharan Africa and southwestern Arabia (Yemen). Otomops madagascariensis from the dry portions of Madagascar is widely recognised to be a distinct species. Based on mitochondrial DNA sequences of the cytochrome b gene (1,004 base pairs; n = 50) and the control region (D-loop, 290 base pairs; n = 52), two Oriental outgroup species (O. wroughtoni and O. cf. formosus) formed a monophyletic clade that was the sister group to the Afro-Malagasy taxa, composed of O. martiensseni and O. madagascariensis. Within the Afro-Malagasy clade, we discovered three well-supported but genetically similar clades (inter-clade genetic distances of 3.4–4.4%) from 1) north-eastern Africa and Arabia, 2) African mainland except northeast Africa, and 3) Madagascar. Taken together, haplotype networks, estimated divergence times, regional species richness and historical demographic data tentatively suggested dispersal from Asia to Africa and Madagascar. To understand ecological determinants of phylogeographic, biogeographic and genetic structure, we assessed the potential distribution of O. martiensseni throughout sub-Saharan Africa with ecological niche modelling (MaxEnt) based on known point localities (n = 60). The species is predicted to occur mainly in woodlands and forests and in areas of rough topography. Continuity of suitable habitats supported our inferred high levels of continental gene flow (relatively low genetic distances), and suggested that factors other than habitat suitability have resulted in the observed phylogeographic structure (e.g., seasonal mass migrations of insects that might be tracked by these bats). Based on a Bayesian relaxed clock approach and two fossil calibration dates, we estimated that African and Oriental clades diverged at 4.2 Mya, Malagasy and African clades at 1.5 Mya, and African clades 1 and 2 at 1.2 Mya. Integrating phylogenetic, phylogeographic, population genetic and ecological approaches holds promise for a better understanding of biodiversity patterns and evolutionary processes.

A conservation assessment of the bats of the Simandou Range, Guinea, with the first record of Myotis welwitschii (Gray, 1866) from West Africa

We report on the results of a bat survey of the Pic de Fon, Simandou Range, southeastern Guinea. This bat survey was part of a larger Rapid Assessment Program (RAP) study conducted by Conservation International in an area currently explored for iron-ore mining by an international company. We document a speciose bat assemblage characterised by forest species, including bats such as Epomops buettikoferi, Rhinolophus guineensis and Hipposideros jonesi that are endemic to Upper Guinea or West Africa. The sympatric occurence of three species of Kerivoula is noteworthy, with K. phalaena representing the first record for Guinea. Moreover, three individuals of Welwitschs mouse-eared bat, Myotis welwitschii, were captured during the survey. This is the first record for West Africa and represents a range extension of minimally 3,400 km to the northwest from the nearest known localities. We review the distribution of this species in Africa and conclude that the species shows a paramontane distribution pattern (sensu Koopman, 1983). We also report M. welwitschii for the first time from Burundi. Our results of the RAP survey as well as the occurrence of bat species that are endemic to the Upper Guinea Highlands highlight the outstanding regional importance of the montane habitats of West Africa in general, and of the Simandou Range in particular for the conservation of bats in Africa.

Commuting fruit bats beneficially modulate their flight in relation to wind.

When animals move, their tracks may be strongly influenced by the motion of air or water, and this may affect the speed, energetics and prospects of the journey. Flying organisms, such as bats, may thus benefit from modifying their flight in response to the wind vector. Yet, practical difficulties have so far limited the understanding of this response for free-ranging bats. We tracked nine straw-coloured fruit bats (Eidolon helvum) that flew 42.5 ± 17.5 km (mean ± s.d.) to and from their roost near Accra, Ghana. Following detailed atmospheric simulations, we found that bats compensated for wind drift, as predicted under constant winds, and decreased their airspeed in response to tailwind assistance such that their groundspeed remained nearly constant. In addition, bats increased their airspeed with increasing crosswind speed. Overall, bats modulated their airspeed in relation to wind speed at different wind directions in a manner predicted by a two-dimensional optimal movement model. We conclude that sophisticated behavioural mechanisms to minimize the cost of transport under various wind conditions have evolved in bats. The bats’ response to the wind is similar to that reported for migratory birds and insects, suggesting convergent evolution of flight behaviours in volant organisms.

Specific Status of Populations on Madagascar Referred to Miniopterus fraterculus (Chiroptera: Vespertilionidae), with Description of a New Species

Abstract A new species of bat of the genus Miniopterus is described from Madagascar based on a series of specimens taken in the Central Highlands of the island. This new species previously was identified as M. fraterculus, which is widespread in portions of eastern and southern Africa. Comparisons between these 2 taxa were further complicated because M. fraterculus occurs in portions of its range in sympatry with a morphologically similar species, M. natalensis. Based on specimen material and associated tissue samples from near the type localities of M. natalensis and M. fraterculus, as well as access to some of the critical type specimens, morphological and genetic molecular analyses were used to determine that Malagasy specimens previously assigned to M. fraterculus represent a previously unrecognized species of Miniopterus endemic to the island. Given that the habitat used by Miniopterus sp. nov. is not necessarily associated with native forest, that it has a broad distribution across the Central Highlands, and that it has been found in synanthropic situations, this species is not considered a conservation concern.

Pronounced seasonal changes in the movement ecology of a highly gregarious central-place forager, the african straw-coloured fruit bat (Eidolon helvum)

Background Straw-coloured fruit bats (Eidolon helvum) migrate over vast distances across the African continent, probably following seasonal bursts of resource availability. This causes enormous fluctuations in population size, which in turn may influence the bats’ impact on local ecosystems. We studied the movement ecology of this central-place forager with state-of-the-art GPS/acceleration loggers and concurrently monitored the seasonal fluctuation of the colony in Accra, Ghana. Habitat use on the landscape scale was assessed with remote sensing data as well as ground-truthing of foraging areas. Principal Findings During the wet season population low (~ 4000 individuals), bats foraged locally (3.5–36.7 km) in urban areas with low tree cover. Major food sources during this period were fruits of introduced trees. Foraging distances almost tripled (24.1–87.9 km) during the dry season population peak (~ 150,000 individuals), but this was not compensated for by reduced resting periods. Dry season foraging areas were random with regard to urban footprint and tree cover, and food consisted almost exclusively of nectar and pollen of native trees. Conclusions and Significance Our study suggests that straw-coloured fruit bats disperse seeds in the range of hundreds of meters up to dozens of kilometres, and pollinate trees for up to 88 km. Straw-coloured fruit bats forage over much larger distances compared to most other Old World fruit bats, thus providing vital ecosystem services across extensive landscapes. We recommend increased efforts aimed at maintaining E. helvum populations throughout Africa since their keystone role in various ecosystems is likely to increase due to the escalating loss of other seed dispersers as well as continued urbanization and habitat fragmentation.

On a collection of bats (Mammalia: Chiroptera) from The Gambia

A recent collection of bats from The Gambia presented in this publication comprises 17 species, four of which (Lissonycteris angolensis, Pipistrellus (P.) rusticus, P. (Neoromicia) guineensis, and Scotoecus hirundo) represent new records for The Gambia, raising the total number of known species from 27 to 31. Notes on taxonomy, distribution, ecology and biology are presented.