Jakub Drnec

Integration techniques for surface x-ray diffraction data obtained with a two-dimensional detector

This article proposes two integration methods to determine the structure factors along a surface diffraction rod measured with a two-dimensional detector. The first method applies the classic way of calculating integrated intensities in angular space. This is adapted to work efficiently with two-dimensional data. The second method is based on integration in reciprocal space. An intensity map is created by converting the detected intensity pixel by pixel to the reciprocal space. The integration is then performed directly on this map. A theoretical framework, as well as a comparison between the two integration methods, is provided.

BINoculars: data reduction and analysis software for two‐dimensional detectors in surface X‐ray diffraction

BINoculars is a tool for data reduction and analysis of large sets of surface diffraction data that have been acquired with a two-dimensional X-ray detector.

Structural Reorganization of Pt(111) Electrodes by Electrochemical Oxidation and Reduction

The surface restructuring of Pt(111) electrodes upon electrochemical oxidation/reduction in 0.1 M HClO4 was studied by in situ grazing-incidence small-angle X-ray scattering and complementary scanning tunneling microscopy measurements. These methods allow quantitative determination of the formation and structural evolution of nanoscale Pt islands during potential cycles into the oxidation region. A characteristic ripening behavior is observed, where these islands become more prominent and homogeneous in size with increasing number of cycles. Their characteristic lateral dimensions primarily depend on the upper potential limit of the cycle and only slightly increase with cycle number. The structural evolution of the Pt surface morphology strongly resembles that found in studies of Pt(111) homoepitaxial growth and ion erosion in ultrahigh vacuum. It can be fully explained by a microscopic model based on the known surface dynamic behavior under vacuum conditions, indicating that the same dynamics also describe the structural evolution of Pt in the electrochemical environment.

Atom-scale depth localization of biologically important chemical elements in molecular layers

Significance Interfacial molecular layers are a major component of all biological matter and also play key roles in most biotechnological applications. The understanding of important biological processes involving molecular layers typically relies on detailed structural insight. We demonstrate that standing-wave X-ray fluorescence enables the label-free, element-specific structural investigation of molecular layers at atom-scale resolution perpendicular to the interface. The present work establishes a promising approach to the comprehensive structural analysis of complex biological and biotechnologically relevant surfaces. In nature, biomolecules are often organized as functional thin layers in interfacial architectures, the most prominent examples being biological membranes. Biomolecular layers play also important roles in context with biotechnological surfaces, for instance, when they are the result of adsorption processes. For the understanding of many biological or biotechnologically relevant phenomena, detailed structural insight into the involved biomolecular layers is required. Here, we use standing-wave X-ray fluorescence (SWXF) to localize chemical elements in solid-supported lipid and protein layers with near-Ångstrom precision. The technique complements traditional specular reflectometry experiments that merely yield the layers’ global density profiles. While earlier work mostly focused on relatively heavy elements, typically metal ions, we show that it is also possible to determine the position of the comparatively light elements S and P, which are found in the most abundant classes of biomolecules and are therefore particularly important. With that, we overcome the need of artificial heavy atom labels, the main obstacle to a broader application of high-resolution SWXF in the fields of biology and soft matter. This work may thus constitute the basis for the label-free, element-specific structural investigation of complex biomolecular layers and biological surfaces.

Surface distortion as a unifying concept and descriptor in oxygen reduction reaction electrocatalysis

Tuning the surface structure at the atomic level is of primary importance to simultaneously meet the electrocatalytic performance and stability criteria required for the development of low-temperature proton-exchange membrane fuel cells (PEMFCs). However, transposing the knowledge acquired on extended, model surfaces to practical nanomaterials remains highly challenging. Here, we propose ‘surface distortion’ as a novel structural descriptor, which is able to reconciliate and unify seemingly opposing notions and contradictory experimental observations in regards to the electrocatalytic oxygen reduction reaction (ORR) reactivity. Beyond its unifying character, we show that surface distortion is pivotal to rationalize the electrocatalytic properties of state-of-the-art of PtNi/C nanocatalysts with distinct atomic composition, size, shape and degree of surface defectiveness under a simulated PEMFC cathode environment. Our study brings fundamental and practical insights into the role of surface defects in electrocatalysis and highlights strategies to design more durable ORR nanocatalysts.Tuning surface structure is key for electrocatalytic performance and stability of proton-exchange membrane fuel cells. Surface distortion as a structural descriptor can help to clarify the role of surface defects and to design enhanced nanocatalysts.

Transmission Surface Diffraction for Operando Studies of Heterogeneous Interfaces

Processes at material interfaces to liquids or to high-pressure gases often involve structural changes that are heterogeneous on the micrometer scale. We present a novel in situ X-ray scattering technique that uses high-energy photons and a transmission geometry for atomic-scale studies under these conditions. Transmission surface diffraction gives access to a large fraction of reciprocal space in a single acquisition, allowing direct imaging of the in-plane atomic arrangement at the interface. Experiments with focused X-ray beams enable mapping of these structural properties with micrometer spatial resolution. The potential of this new technique is illustrated by in situ studies of electrochemical surface phase transitions and deposition processes.

Oxidation of CO on Pd(1 0 0): on the structural evolution of the PdO layer during the self sustained oscillation regime

Abstract Under particular temperature and gas conditions the reactivity of the Pd(1 0 0) surface toward CO oxidation exhibits oscillatory behaviour. Here we examine the surface structure of this model catalyst and show that the periodic pattern is more complex than previously reported and that superimposed on the overall oscillation much faster structural variations are present. By examining the structure of the sample surface at high temporal resolution we conclude that the structure of the oxide layer present at the surface evolves continuously toward a more disordered phase in agreement with the Mars-Van Krevelen reaction mechanism.

Combined scanning probe microscopy and x-ray scattering instrument for in situ catalysis investigations

We have developed a new instrument combining a scanning probe microscope (SPM) and an X-ray scattering platform for ambient-pressure catalysis studies. The two instruments are integrated with a flow reactor and an ultra-high vacuum system that can be mounted easily on the diffractometer at a synchrotron end station. This makes it possible to perform SPM and X-ray scattering experiments in the same instrument under identical conditions that are relevant for catalysis.

Dibenzo Crown Ether Layer Formation on Muscovite Mica

Stable layers of crown ethers were grown on muscovite mica using the potassium-crown ether interaction. The multilayers were grown from solution and from the vapor phase and were analyzed with atomic force microscopy (AFM), matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry, and surface X-ray diffraction (SXRD). The results show that the first molecular layer of the three investigated dibenzo crown ethers is more rigid than the second because of the strong interaction of the first molecular layer with the potassium ions on the surface of muscovite mica. SXRD measurements revealed that for all of the investigated dibenzo crown ethers the first molecule lies relatively flat whereas the second lies more upright. The SXRD measurements further revealed that the molecules of the first layer of dibenzo-15-crown-5 are on top of a potassium atom, showing that the binding mechanism of this layer is indeed of the coordination complex form. The AFM and SXRD data are in good agreement, and the combination of these techniques is therefore a powerful way to determine the molecular orientation at surfaces.