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Featured researches published by Jakub Parak.


international conference of the ieee engineering in medicine and biology society | 2014

Evaluation of wearable consumer heart rate monitors based on photopletysmography.

Jakub Parak; Ilkka Korhonen

Wearable monitoring of heart rate (HR) during physical activity and exercising allows real time control of exercise intensity and training effect. Recently, technologies based on pulse plethysmography (PPG) have become available for personal health management for consumers. However, the accuracy of these monitors is poorly known which limits their application. In this study, we evaluated accuracy of two PPG based (wrist i.e. Mio Alpha vs forearm i.e. Schosche Rhythm) commercially available HR monitors during exercise. 21 healthy volunteers (15 male and 6 female) completed an exercise protocol which included sitting, lying, walking, running, cycling, and some daily activities involving hand movements. HR estimation was compared against values from the reference electrocardiogram (ECG) signal. The heart rate estimation reliability scores for <;5% accuracy against reference were following: mio Alpha 77,83% and Scosche Rhytm 76,29%. The estimated results indicate that performance of devices depends on various parameters, including specified activity, sensor type and device placement.


international conference of the ieee engineering in medicine and biology society | 2015

Evaluation of the beat-to-beat detection accuracy of PulseOn wearable optical heart rate monitor.

Jakub Parak; Adrian Tarniceriu; Philippe Renevey; Mattia Bertschi; Ricard Delgado-Gonzalo; Ilkka Korhonen

Heart rate variability (HRV) provides significant information about the health status of an individual. Optical heart rate monitoring is a comfortable alternative to ECG based heart rate monitoring. However, most available optical heart rate monitoring devices do not supply beat-to-beat detection accuracy required by proper HRV analysis. We evaluate the beat-to-beat detection accuracy of a recent wrist-worn optical heart rate monitoring device, PulseOn (PO). Ten subjects (8 male and 2 female; 35.9±10.3 years old) participated in the study. HRV was recorded with PO and Firstbeat Bodyguard 2 (BG2) device, which was used as an ECG based reference. HRV was recorded during sleep. As compared to BG2, PO detected on average 99.57% of the heartbeats (0.43% of beats missed) and had 0.72% extra beat detection rate, with 5.94 ms mean absolute error (MAE) in beat-to-beat intervals (RRI) as compared to the ECG based RRI BG2. Mean RMSSD difference between PO and BG2 derived HRV was 3.1 ms. Therefore, PO provides an accurate method for long term HRV monitoring during sleep.


international conference of the ieee engineering in medicine and biology society | 2015

Evaluation of accuracy and reliability of PulseOn optical heart rate monitoring device.

Ricard Delgado-Gonzalo; Jakub Parak; Adrian Tarniceriu; Philippe Renevey; Mattia Bertschi; Ilkka Korhonen

PulseOn is a wrist-worn optical heart rate (HR) monitor based on photoplethysmography. It utilizes multi-wavelength technology and optimized sensor geometry to monitor blood flow at different depths of skin tissue, and it dynamically adapts to an optimal measurement depth in different conditions. Movement artefacts are reduced by adaptive movement-cancellation algorithms and optimized mechanics, which stabilize the sensor-to-skin contact. In this paper, we evaluated the accuracy and reliability of PulseOn technology against ECG-derived HR in laboratory conditions during a wide range of physical activities and also during outdoor sports. In addition, we compared the performance to another on-the-shelf wrist-worn consumer product Mio LINK®. The results showed PulseOn reliability (% of time with error <;10bpm) of 94.5% with accuracy (100% - mean absolute percentage error) 96.6% as compared to ECG (vs 86.6% and 94.4% for Mio LINK®, correspondingly) during laboratory protocol. Similar or better reliability and accuracy was seen during normal outdoor sports activities. The results show that PulseOn provides reliability and accuracy similar to traditional chest strap ECG HR monitors during cardiovascular exercise.


Wearable Sensors#R##N#Fundamentals, Implementation and Applications | 2014

Application of Optical Heart Rate Monitoring

Mathieu Lemay; Mattia Bertschi; Josep Sola; Philippe Renevey; Jakub Parak; Ilkka Korhonen

The present chapter is dedicated to a novel family of sensors used for heart-rate monitoring. Based on the so-called photoplethysmographic technology, optical heart-rate monitors open the door to the comfortable and continuous monitoring of health status during daily life. Either integrated within a wrist-worn device, an arm band, or a chest patch, optical heart-rate monitors are capable of accurately measuring heart rate by assessing the arterial pulsatility of underlying skin vascular beds. After reviewing the physical and physiological background of the photoplethysmographic phenomenon, this chapter copes with the design of optical heart-rate sensors and monitors in terms of optomechanical properties and signal processing and motion artifact issues. The performance of recently launched commercial optical heart-rate monitors is briefly addressed in the context of sport activities, daily life periods, and clinical applications.


biomedical and health informatics | 2014

W2E — Wellness Warehouse Engine for semantic interoperability of consumer health data

Mika Saaranen; Jakub Parak; Harri Honko; Timo Aaltonen; Ilkka Korhonen

Novel health monitoring devices and applications allow consumers easy and ubiquitous ways to monitor their health status. However, technologies from different providers lack both technical and semantic interoperability and hence the resulting health data is often deeply tied to specific service, which is limiting its re-usability and utilization in different services. We have designed a Wellness Warehouse Engine (W2E) that bridges this gap and enables seamless exchange of data between different services. W2E provides interfaces to various data sources and makes data available via unified REST API to other services. Importantly, it includes Unifier - an engine that allows transforming input data into generic units reusable by other services, and Analyzer - an engine that allows advanced analysis of input data, such as combining different data sources into new output parameters. In this paper, we describe the architecture of W2E and demonstrate its applicability by using it for uniting data from several consumer activity trackers. Finally, we discuss challenges of building Unifier and Analyzer engines for ever-enlarging number of new devices.


IEEE Journal of Biomedical and Health Informatics | 2016

W2E-–Wellness Warehouse Engine for Semantic Interoperability of Consumer Health Data

Harri Honko; Vafa Andalibi; Timo Aaltonen; Jakub Parak; Mika Saaranen; Jari Viik; Ilkka Korhonen

Novel health monitoring devices and applications allow consumers easy and ubiquitous ways to monitor their health status. However, technologies from different providers lack both technical and semantic interoperability and hence the resulting health data are often deeply tied to a specific service, which is limiting its reusability and utilization in different services. We have designed a Wellness Warehouse Engine (W2E) that bridges this gap and enables seamless exchange of data between different services. W2E provides interfaces to various data sources and makes data available via unified representational state transfer application programming interface to other services. Importantly, it includes Unifier--an engine that allows transforming input data into generic units reusable by other services, and Analyzer--an engine that allows advanced analysis of input data, such as combining different data sources into new output parameters. In this paper, we describe the architecture of W2E and demonstrate its applicability by using it for unifying data from four consumer activity trackers, using a test base of 20 subjects each carrying out three different tracking sessions. Finally, we discuss challenges of building a scalable Unifier engine for the ever-enlarging number of new devices.


Archive | 2019

Atrial Fibrillation Detection from Wrist Photoplethysmography Data Using Artificial Neural Networks

Zeinab Rezaei Yousefi; Jakub Parak; Adrian Tarniceriu; Jarkko Harju; Arvi Yli-Hankala; Ilkka Korhonen; Antti Vehkaoja

Atrial fibrillation (AF) can be detected by analysis of the rhythm of heartbeats. The development of photoplethysmography (PPG) technology has enabled comfortable and unobtrusive physiological monitoring of heart rate with a wrist-worn device. Therefore, it is important to examine the possibility of using PPG signal to detect AF episodes in real-world situations. The aim of this paper is to evaluate an AF detection method based on artificial neural networks (ANN) from PPG-derived beat-to-beat interval data used for primary screening or monitoring purposes. The proposed classifier is able to distinguish between AF and sinus rhythms (SR). In total 30 patients (15 with AF, 15 with SR, mean age 71.5 years) with multiple comorbidities were monitored during routine postoperative treatment. The monitoring included standard ECG and a wrist-worn PPG monitor with green and infrared light sources. The input features of the ANN are based on the information obtained from inter-beat interval (IBI) sequences of 30 consecutive PPG pulses. One of the main concerns about the PPG signals is their susceptibility to be corrupted by noise and artifacts mostly caused by subject movement. Therefore, in the proposed method the IBI reliability is automatically evaluated beforehand. The amount of uncertainty due to unreliable beats was 15.42%. The achieved sensitivity and specificity of AF detection for 30 beats sequences were \( 99.20 \pm 1.3\% \) and \( 99.54 \pm 0.64\% \), respectively. Based on these results, the ANN algorithm demonstrated excellent performance at recognizing AF from SR using wrist PPG data.


Physiological Measurement | 2018

Monitoring of heart rate and inter-beat intervals with wrist plethysmography in patients with atrial fibrillation

Jarkko Harju; Adrian Tarniceriu; Jakub Parak; Antti Vehkaoja; Arvi Yli-Hankala; Ilkka Korhonen

OBJECTIVE Atrial fibrillation (AF) causes marked risk for patients, while silent fibrillation may remain unnoticed if not suspected and screened. Development of comfortable yet accurate beat-to-beat heart rate (HR) monitoring with good AF detection sensitivity would facilitate screening and improve treatment. The purpose of this study was to evaluate whether a wrist-worn photoplethysmography (PPG) device can be used to monitor beat-to-beat HR accurately during post-operative treatment in patients suffering from AF and whether wrist-PPG can be used to distinguish AF from sinus rhythm (SR). APPROACH Twenty-nine patients (14 with AF, 15 with SR, mean age 71.5 years) with multiple comorbidities were monitored during routine post-operative treatment. The monitoring included standard ECG, finger PPG monitoring and a wrist-worn PPG monitor with green and infrared light sources. The HR from PPG sensors was compared against ECG-derived HR. MAIN RESULTS The wrist PPG technology had very good HR and beat detection accuracy when using green light. For the SR group, the mean absolute error (MAE) for HR was 1.50 bpm, and for the inter-beat intervals (IBI), the MAE was 7.64 ms. For the AF group, the MAE for HR was 4.28 bpm and for IBI, the MAE was 14.67 ms. Accuracy for the infrared (IR) channel was worse. Finger PPG provided similar accuracy for HR and better accuracy for the IBI. AF detection sensitivity using green light was 99.0% and the specificity was 93.0%. Performance can be improved by discarding unreliable IBI periods. SIGNIFICANCE Results suggest that wrist PPG measurement allows accurate HR and beat-to-beat HR monitoring also in AF patients, and could be used for differentiating between SR and AF with very good sensitivity.


international conference of the ieee engineering in medicine and biology society | 2016

Towards 24/7 continuous heart rate monitoring

Adrian Tarniceriu; Jakub Parak; Philippe Renevey; Marko Nurmi; Mattia Bertschi; Ricard Delgado-Gonzalo; Ilkka Korhonen

Heart rate (HR) and HR variability (HRV) carry rich information about physical activity, mental and physical load, physiological status, and health of an individual. When combined with activity monitoring and personalized physiological modelling, HR/HRV monitoring may be used for monitoring of complex behaviors and impact of behaviors and external factors on the current physiological status of an individual. Optical HR monitoring (OHR) from wrist provides a comfortable and unobtrusive method for HR/HRV monitoring and is better adhered by users than traditional ECG electrodes or chest straps. However, OHR power consumption is significantly higher than that for ECG based methods due to the measurement principle based on optical illumination of the tissue. We developed an algorithmic approach to reduce power consumption of the OHR in 24/7 HR trending. We use continuous activity monitoring and a fast converging frequency domain algorithm to derive a reliable HR estimate in 7.1s (during outdoor sports, in average) to 10.0s (during daily life). The method allows >80% reduction in power consumption in 24/7 OHR monitoring when average HR monitoring is targeted, without significant reduction in tracking accuracy.


ieee embs international conference on biomedical and health informatics | 2018

Learning a physical activity classifier for a low-power embedded wrist-located device

Ricard Delgado-Gonzalo; Philippe Renevey; Adrian Tarniceriu; Jakub Parak; Mattia Bertschi

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Ilkka Korhonen

Tampere University of Technology

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Philippe Renevey

Swiss Center for Electronics and Microtechnology

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Mattia Bertschi

Swiss Center for Electronics and Microtechnology

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Ricard Delgado-Gonzalo

Swiss Center for Electronics and Microtechnology

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Antti Vehkaoja

Tampere University of Technology

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Harri Honko

Tampere University of Technology

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Mika Saaranen

Tampere University of Technology

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Timo Aaltonen

Tampere University of Technology

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Jari Viik

Tampere University of Technology

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