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Dive into the research topics where James Farris is active.

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Featured researches published by James Farris.


Oncogene | 2001

Alterations in p53 and E2F-1 function common to immortalized chicken embryo fibroblasts

Hyunggee Kim; Seungkwon You; In Jeong Kim; Linda K. Foster; James Farris; Sakthikumar Ambady; F. Abel Ponce de León; Douglas N. Foster

A number of non-virally and non-chemically immortalized chicken embryo fibroblast (CEF) cells have been established recently in continuous cell culture. All immortal CEF cells tested showed common genetic alterations in the expression patterns of p53 and E2F-1 mRNA and protein which were down- and up-regulated, respectively. The biological effects of differentially regulated p53 and E2F-1 were determined by reporter gene transcriptional activity assays, DNA binding assays, and Northern blot analysis of the expression patterns of down-stream genes. In addition, expression of most of the cyclin genes was up-regulated in immortal CEF cells, which may be associated with the rapid cell division rates and serum-independent growth patterns seen in immortal CEF cells. The telomeric lengths and chromosome integrity were maintained in all immortal CEF cell lines without detectable telomerase activity. Although the functional inactivations of the p53 and Rb regulatory pathways are known to be common events for cellular immortalization, the genetic changes leading to alteration of p53 and E2F-1 function through transcriptional and post-transcriptional regulation seem to be unique in immortal CEF cells.


Biochemical Journal | 2002

Events in the immortalizing process of primary human mammary epithelial cells by the catalytic subunit of human telomerase.

Hyunggee Kim; James Farris; Shelly A. Christman; Byung Whi Kong; Linda K. Foster; Scott M. O'Grady; Douglas N. Foster

The in vitro immortalization of primary human mammary epithelial (HME) cells solely by the exogenous introduction of the catalytic subunit of human telomerase (hTERT) has been achieved. Early passage hTERT-transfected HME (T-HME) cells continuously decreased the length and density of telomeres even in the presence of telomerase activity, with a significant number of cells staining positive for senescence-associated beta-galactosidase (SA-beta-gal). Subsequently, with the increase in cell passages, the copy number of the exogenously transfected hTERT gene and the percentage of SA-beta-gal positive cells were found to decrease. Eventually, a single copy of the exogenous hTERT gene was observed in the relatively later passage T-HME cells in which telomere length was elongated and stabilized without obvious activation of endogenous hTERT and c-Myc expression. In T-HME cells, the expression of two p53 regulated genes p21(WAF) and HDM2 increased (as in primary senescent HME cells), and was found to be further elevated as the function of p53 was activated by treatment with DNA-damaging agents. p16(INK4a) was shown to be significantly higher in the primary senescent HME and the early passage T-HME cells when compared with the primary presenescent HME cells, with a dramatic repression of p16(INK4a) observed in the later passage T-HME cells. In addition, the expression of E2F1 and its transcription factor activity were found to be significantly higher in the later passage T-HME cells when compared with the earlier passage T-HME cells. Together, our results indicate that in vitro immortalization in HME cells may require the activation of the function of telomerase and other genetic alterations such as the spontaneous loss of p16(INK4a) expression.


Oncogene | 2001

The rapid destabilization of p53 mRNA in immortal chicken embryo fibroblast cells

Hyunggee Kim; Seungkwon You; Linda K. Foster; James Farris; Douglas N. Foster

The steady-state levels of p53 mRNA were dramatically lower in immortal chicken embryo fibroblast (CEF) cell lines compared to primary CEF cells. In the presence of cycloheximide (CHX), the steady-state levels of p53 mRNA markedly increased in immortal CEF cell lines, similar to levels found in primary cells. The de novo synthetic rates of p53 mRNA were relatively similar in primary and immortal cells grown in the presence or absence of CHX. Destabilization of p53 mRNA was observed in the nuclei of immortal, but not primary, CEF cells. The half-life of p53 mRNA in primary cells was found to be a relatively long 23 h compared to only 3 h in immortal cells. The expression of transfected p53 cDNA was inhibited in immortal cells, but restored upon CHX treatment. The 5′-region of the p53 mRNA was shown to be involved in the rapid p53 mRNA destabilization in immortal cells by expression analysis of 5′- and 3′-deleted p53 cDNAs as well as fusion mRNA constructs of N-terminal p53 and N-terminal deleted LacZ genes. Together, it is suggestive that the downregulation of p53 mRNA in immortal CEF cells occurs through a post-transcriptional destabilizing mechanism.


Biochimica et Biophysica Acta | 2001

Necrotic cell death by hydrogen peroxide in immortal DF-1 chicken embryo fibroblast cells expressing deregulated MnSOD and catalase

Hyunggee Kim; Seungkwon You; Byung-Whi Kong; Linda K. Foster; James Farris; Douglas N. Foster

The reactive oxygen species are known as endogenous toxic oxidant damaging factors in a variety of cell types, and in response, the antioxidant genes have been implicated in cell proliferation, senescence, immortalization, and tumorigenesis. The expression of manganese superoxide dismutase mRNA was shown to increase in most of the immortal chicken embryo fibroblast (CEF) cells tested, while expression of catalase mRNA appeared to be dramatically decreased in all immortal CEF cells compared to their primary counterparts. The expression of copper-zinc superoxide dismutase mRNA was shown to increase slightly in some immortal CEF cells. The glutathione peroxidase expressed relatively similar levels in both primary and immortal CEF cells. As primary and immortal DF-1 CEF cells were treated with 10-100 microM of hydrogen peroxide (concentrations known to be sublethal in human diploid fibroblasts), immortal DF-1 CEF cells were shown to be more sensitive to hydrogen peroxide, and total cell numbers were dramatically reduced when compared with primary cell counterparts. This increased sensitivity to hydrogen peroxide in immortal DF-1 cells occurred without evident changes in either antioxidant gene expression, mitochondrial membrane potential, cell cycle distribution or chromatin condensation. However, the total number of dead cells without chromatin condensation was dramatically elevated in immortal DF-1 CEFs treated with hydrogen peroxide, indicating that the inhibition of immortal DF-1 cell growth by low concentrations of hydrogen peroxide is due to increased necrotic cell death, but not apoptosis. Taken together, our observation suggests that the balanced antioxidant function might be important for cell proliferation in response to toxic oxidative damage by hydrogen peroxide.


Oncogene | 2001

Post-transcriptional inactivation of p53 in immortalized murine embryo fibroblast cells

Hyunggee Kim; Seungkwon You; James Farris; Linda K. Foster; Douglas N. Foster

The steady-state levels of p53 mRNA and protein were barely detectable by Northern and Western blot analysis in spontaneously immortalized (10)3 and (10)7 murine embryo fibroblast (MEF) cells. But when cells were treated with cycloheximide (CHX) or emetine, expression levels were restored to those observed in primary and immortal (10)10 MEF cells. However, levels of p53 mRNA were not changed in primary or (10)10 MEF cells by CHX treatment. De novo p53 mRNA synthetic rates were similar in primary, (10)10, (10)3, and (10)7 MEF cells treated with or without CHX. Treatment with actinomycin D (ActD) showed that p53 mRNA in primary and (10)10 MEF cells had a relatively long half-life of 22 h, compared to less than 2 h for (10)3 and (10)7 MEF cells. Pulse-chase analysis of p53 mRNA turnover using CHX and ActD showed that the rapid destabilization of p53 mRNA in (10)3 and (10)7 MEF cells could be regulated at the transcriptional and translational levels. In addition, the destabilization of p53 mRNA appeared to occur in the nucleus for (10)3 and (10)7 cells, but not for primary and (10)10 MEF cells. Taken together, the present study demonstrates that inactivation of the p53 gene occurs at the post-transcriptional level by rapid destabilization of its mRNA in the nucleus of spontaneously immortalized (10)3 and (10)7 MEF cells.


Biochemical Journal | 2001

Differential expression of chicken dimerization cofactor of hepatocyte nuclear factor-1 (DcoH) and its novel counterpart, DcoHalpha.

Hyunggee Kim; Seungkwon You; Linda K. Foster; James Farris; Yun-Jaie Choi; Douglas N. Foster

We have used differential display PCR to study altered gene expression in immortalized chicken embryo fibroblasts (CEFs) that have been established in our laboratory. This technique resulted in the cloning of a novel counterpart of the previously cloned chicken dimerization cofactor of hepatocyte nuclear factor (HNF)-1 (cDcoH), which was identified as cDcoHalpha. The steady-state mRNA levels of cDcoHalpha were up-regulated in all immortal CEFs tested compared with primary CEF cells. cDcoH and cDcoHalpha showed opposite patterns of mRNA expression due to differential regulation of transcription rates, but not mRNA half-lives, in primary and immortal CEFs. Expression of cDcoHalpha increased in the late G1 and early S phases of the cell cycle, while cDcoH mRNA increased in the late S and G2/M phases. In contrast with consistent expression of both genes in primary quiescent cells, cDcoH mRNA, but not cDcoHalpha mRNA, was dramatically decreased in primary senescent cells. The highest levels of cDcoHalpha mRNA were found in the kidney, liver, heart and ovarian follicles, while the major tissues expressing cDcoH were hypothalamus, kidney and liver. cDcoH and cDcoHalpha probes did not cross-hybridize to human hepatocyte mRNA. When transfected into human HepG2 cells, both cDcoH and cDcoHalpha showed similar functional activity as measured by increased expression of a reporter gene, as well as alpha-fetoprotein and albumin genes that both contain HNF-1 binding elements in their promoters. Our results suggest that the novel chicken DcoHalpha might function as a transcriptional cofactor for HNF-1 in specific cellular-environmental states.


Biology of Reproduction | 2001

Gonad-specific expression of two novel chicken complementary DNA isoforms.

Hyunggee Kim; Seungkwon You; James Farris; Linda K. Foster; Yun-Jaie Choi; Douglas N. Foster

Abstract Differential display reverse transcription polymerase chain reaction was used to isolate a novel cDNA clone (C47) that was initially shown to be downregulated in senescent chicken embryo fibroblast cells. In a tissue environment, C47 transcripts were only detected in gonadal tissue. The expression of the larger isoform (C47L) was essentially restricted to the ovary, and the smaller isoform (C47S) was predominately expressed in the testis. Although levels of the C47L mRNA were relatively high in both the small white and the developing larger follicles, there was very low expression in regressed and postovulated follicles. Nucleotide sequence analysis indicated that two different transcripts of the single-copy C47 gene were generated by differential polyadenylation in the 3′ untranslated region. As a result of a single nucleotide deletion, the C47L mRNA produced a smaller 48-kDa protein, and the C47S mRNA generated a larger 57-kDa protein when both were translated in vitro. Both protein isoforms were shown to contain conserved C2H2 Zn finger motifs and nuclear localization signals suggestive of being putative transcription factors. These results suggest that the C47L and C47S isoforms might play an important role in the regulation and maintenance of ovarian and testicular functions, respectively, in the chicken.


Biochimica et Biophysica Acta | 2002

Expression of the chicken homologue of the mouse double minute 2 gene

Daryle Lafleur; Hyunggee Kim; James Farris; Douglas N. Foster

While the p53 tumor suppressor plays a crucial role in regulating cell cycle checkpoints and apoptosis by acting as either a transcriptional activator or repressor in a variety of mammalian cells, its evolutionarily conserved functions remain to be elucidated in non-mammalian species. In the present study, we determined the functional role of p53 in avian cells by analyzing the expression pattern of the chicken homologue (CDM2) of mouse double minute 2, one of the transcriptional target genes of p53. CDM2 displayed considerable conservation in the p53 binding region as well as the nuclear localization and nuclear export signals and was found to be abundantly expressed in the reproductive organs (testis and ovarian follicles) and in the immune organs (bone marrow, bursa and thymus). CDM2 expression exhibited an early serum-response pattern consistent with its mammalian counterparts and was dramatically downregulated in most of the p53-downregulated immortal chicken embryo fibroblast (CEF) cells analyzed. Expression of CDM2 was shown to be transcriptionally upregulated in the primary CEF cells where p53 was activated by either mitomycin C treatment or by the exogenous transfection of the chicken p53 cDNA. Together, the current studies demonstrate that the expression of MDM2 homologues may be biologically conserved in mammalian and avian cells.


Animal Biotechnology | 1996

Nucleotide sequence of the complementary DNA encoding equine clusterin a

J.A. Barber; James Farris; M.H.T. Troedsson; Bo G. Crabo; Douglas N. Foster

Abstract Two complementary DNA (cDNA) clones encoding equine clusterin were isolated from a stallion testis cDNA library. Nucleotide sequence analysis of the longer, near‐full length clone revealed a 1670 base pair (bp) fragment that contained 74 nucleotides of the 5’ untranslated region (UTR), an open reading frame of 1350 bp that encodes a 21 amino acid (aa) leader polypeptide segment as well as a 429 aa mature equine clusterin protein, and a 3’ UTR that is 225 bp long followed by a 21 bp polyadenylation signal. The equine clusterin nucleotide sequence is approximately 80% similar to other mammalian clusterins which have been cloned and sequenced. Northern blot analysis showed an approximate 1.8 kb equine testicular and epididymal mRNA transcript that hybridized to the equine cDNA probe. Differential expression of the equine clusterin transcript occurred between epididymal segments.


Experimental Cell Research | 2002

Expression Profiles of p53-, p16INK4a-, and Telomere-Regulating Genes in Replicative Senescent Primary Human, Mouse, and Chicken Fibroblast Cells

Hyunggee Kim; Seungkwon You; James Farris; Byung Whi Kong; Shelly A. Christman; Linda K. Foster; Douglas N. Foster

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Hyunggee Kim

University of Minnesota

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Bo G. Crabo

University of Minnesota

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In Jeong Kim

University of Minnesota

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