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Featured researches published by James T. Downs.


Journal of Immunological Methods | 2001

Analysis of collagenase-cleavage of type II collagen using a neoepitope ELISA

James T. Downs; Caryl Lane; Nestor B Nestor; Thomas J. McLellan; Michele A. Kelly; George A. Karam; Peter S. Mezes; Jean-Pierre Pelletier; Ivan G. Otterness

We have developed monoclonal antibody 5109 against a unique highly acidic sequence in type II collagen. When paired with previously reported monoclonal antibody 9A4, 5109 can be used as the capture antibody in an ELISA assay for the neoepitope generated by collagenase-cleavage of type II collagen. The assay detects the sequence ZGlyGluX(759)GlyAspAspGlyProSerGlyAlaGluGlyProX(771)GlyProGlnGly(775) where Z is a variable length polypeptide, X is proline or hydroxyproline, and Gly(775) corresponds to C-terminal amino acid of the 3/4 piece after collagenase cleavage. Antibody 5109 detects the first and 9A4 the second underlined sequence. Antibody 5109 recognizes its epitope with a K=1.2x10(-8) M independently of hydroxylation of X(759). When X(771) is proline, the sequence is 90x more sensitively detected by this ELISA than when it is hydroxyproline. Type II collagen of human articular cartilage was fragmented by cyanogen bromide (CNBr) and trypsin. The immunoreactive fragment was captured with 5109 and sequenced. Proline(771) averaged 81% hydroxylated. Other 3rd position prolines were >97% hydroxylated. In urine of control individuals of 50-70 years of age, we failed to detect the presence of the collagen fragment in a majority (8/10) of specimens. The two controls with measurable levels averaged 123 pM. In a similar age cohort of osteoarthritic patients, the majority (9/10) showed measurable values of urinary collagen fragments averaging 312 pM. This assay can be used for monitoring type II collagen metabolism in patients with osteoarthritis.


Journal of Medicinal Chemistry | 2009

Discovery, SAR, and Pharmacokinetics of a Novel 3-Hydroxyquinolin-2(1H)-one Series of Potent d-Amino Acid Oxidase (DAAO) Inhibitors†

Allen J. Duplantier; Stacey L. Becker; Michael John Bohanon; Kris A. Borzilleri; Boris A. Chrunyk; James T. Downs; Lain-Yen Hu; Ayman El-Kattan; Larry C. James; Shenping Liu; Jiemin Lu; Noha Maklad; Mahmoud N. Mansour; Scot Mente; Mary Piotrowski; Subas M. Sakya; Susan Sheehan; Stefanus J. Steyn; Christine A. Strick; Victoria A. Williams; Lei Zhang

3-Hydroxyquinolin-2(1H)-one (2) was discovered by high throughput screening in a functional assay to be a potent inhibitor of human DAAO, and its binding affinity was confirmed in a Biacore assay. Cocrystallization of 2 with the human DAAO enzyme defined the binding site and guided the design of new analogues. The SAR, pharmacokinetics, brain exposure, and effects on cerebellum D-serine are described. Subsequent evaluation against the rat DAAO enzyme revealed a divergent SAR versus the human enzyme and may explain the high exposures of drug necessary to achieve significant changes in rat or mouse cerebellum D-serine.


Matrix Biology | 1999

DETECTION OF COLLAGENASE-INDUCED DAMAGE OF COLLAGEN BY 9A4, A MONOCLONAL C-TERMINAL NEOEPITOPE ANTIBODY

Ivan G. Otterness; James T. Downs; Caryl Lane; Marcia L. Bliven; Hans Stukenbrok; Debra N. Scampoli; Anthony J. Milici; Peter S. Mezes

To determine whether the collagen network is compromised by collagenase during acute inflammation, a monoclonal antibody (9A4) was developed with specificity for the C-terminal neoepitope sequence generated by collagenase-cleavage of type II collagen (Gly-Pro-Pro-Gly-Pro-Gln-Gly-COOH). 9A4 was shown to detect the collagen collagenase-cleavage neoepitope with a K = 1.7 x 10(-7) M (type II) and K = 2 x 10(-6) M (type I). It does not recognize uncleaved native or denatured collagen. Articular cartilage from control animals is unstained by 9A4. During acute inflammation elicited in hamsters by intra-articular LPS, positive staining for the 9A4 neoepitope indicated the collagen was damaged. Wheel running exercise was used to apply stress to control cartilage and cartilage from animals with damaged collagen. After 6 months of running, the cartilage from normal animals was unaffected. By contrast, in the group with damaged collagen, the cartilage was fibrillated in all animals and in half of those, the cartilage failed and bony eburnation resulted.


Cytokine | 1991

Inhibition of interleukin 1 synthesis by tenidap: A new drug for arthritis

Ivan G. Otterness; Marcia L. Bliven; James T. Downs; Edward J. Natoli; Douglas C. Hanson

Tenidap is a new antiarthritic drug of novel chemical structure. This study shows the effects of tenidap on the in vitro synthesis of interleukin 1 (IL-1). IL-1 production by murine peritoneal macrophages was induced either by stimulation with lipopolysaccharide (LPS) or by phagocytosis of zymosan. With either stimulus, tenidap inhibited IL-1 production as measured by a quantitative competitive IL-1 receptor binding assay. Approximately 20 ng/mL of IL-1 was produced by 10(6) macrophages in response to LPS and about half that amount was produced in response to zymosan. Fifty percent inhibition of IL-1 production by tenidap was found at 3 microM for both stimuli. Using goat anti-IL-1 alpha and Western blot analysis, the appearance of intracellular 34 kDa pro-IL-1 alpha was inhibited by tenidap down to 3 microM. Tenidap decreased [35S]Met incorporation into cellular protein at 30 microM but not at 10 or 3 microM, indicating selectivity for IL-1 inhibition relative to total protein synthesis. Because tenidap inhibited IL-1 induction by both zymosan and LPS, it must act subsequently to receptor triggering. As the appearance of IL-1 was inhibited both intracellularly and extracellularly, the primary drug effect cannot be on secretion.


Neuropharmacology | 2011

Modulation of NMDA receptor function by inhibition of d-amino acid oxidase in rodent brain

Christine A. Strick; Cheryl Li; Liam Scott; Brian Harvey; Mihály Hajós; Stefanus J. Steyn; Mary Piotrowski; Larry C. James; James T. Downs; Brian Rago; Stacey L. Becker; Ayman El-Kattan; Youfen Xu; Alan H. Ganong; F. David Tingley; Andres D. Ramirez; Patricia A. Seymour; Victor Guanowsky; Mark J. Majchrzak; Carol B. Fox; Christopher J. Schmidt; Allen J. Duplantier

Observations that N-Methyl-D-Aspartate (NMDA) antagonists produce symptoms in humans that are similar to those seen in schizophrenia have led to the current hypothesis that schizophrenia might result from NMDA receptor hypofunction. Inhibition of D-amino acid oxidase (DAAO), the enzyme responsible for degradation of D-serine, should lead to increased levels of this co-agonist at the NMDA receptor, and thereby provide a therapeutic approach to schizophrenia. We have profiled some of the preclinical biochemical, electrophysiological, and behavioral consequences of administering potent and selective inhibitors of DAAO to rodents to begin to test this hypothesis. Inhibition of DAAO activity resulted in a significant dose and time dependent increase in D-serine only in the cerebellum, although a time delay was observed between peak plasma or brain drug concentration and cerebellum D-serine response. Pharmacokinetic/pharmacodynamic (PK/PD) modeling employing a mechanism-based indirect response model was used to characterize the correlation between free brain drug concentration and D-serine accumulation. DAAO inhibitors had little or no activity in rodent models considered predictive for antipsychotic activity. The inhibitors did, however, affect cortical activity in the Mescaline-Induced Scratching model, produced a modest but significant increase in NMDA receptor-mediated synaptic currents in primary neuronal cultures from rat hippocampus, and resulted in a significant increase in evoked hippocampal theta rhythm, an in vivo electrophysiological model of hippocampal activity. These findings demonstrate that although DAAO inhibition did not cause a measurable increase in D-serine in forebrain, it did affect hippocampal and cortical activity, possibly through augmentation of NMDA receptor-mediated currents.


Archive | 1998

Assays for measurement of protein fragments in biological media

Ivan G. Otterness; Peter S. Mezes; James T. Downs; Kimberly S. Johnson


Bioorganic & Medicinal Chemistry Letters | 2005

Potent pyrimidinetrione-based inhibitors of MMP-13 with enhanced selectivity over MMP-14.

Julian Blagg; Mark C. Noe; Lilli A. Wolf-Gouveia; Lawrence A. Reiter; Ellen R. Laird; Shang-Poa P. Chang; Dennis E. Danley; James T. Downs; Nancy C. Elliott; James D. Eskra; Richard J. Griffiths; Joel R. Hardink; Amber I. Haugeto; Christopher S. Jones; Jennifer Liras; Lori L. Lopresti-Morrow; Peter G. Mitchell; Jayvardhan Pandit; Ralph P. Robinson; Chakrapani Subramanyam; Marcie L. Vaughn-Bowser; Sue A. Yocum


Bioorganic & Medicinal Chemistry Letters | 2006

Potent, selective pyrimidinetrione-based inhibitors of MMP-13

Lawrence A. Reiter; Kevin Daniel Freeman-Cook; Christopher S. Jones; Gary J. Martinelli; Amy S. Antipas; Martin A. Berliner; Kaushik Datta; James T. Downs; James D. Eskra; Michael D. Forman; Elaine M. Greer; Roberto E. Guzman; Joel R. Hardink; Fouad Janat; Nandell F. Keene; Ellen R. Laird; Jennifer Liras; Lori L. Lopresti-Morrow; Peter G. Mitchell; Jayvardhan Pandit; Donald G. Robertson; Diana Sperger; Marcie L. Vaughn-Bowser; Darra M. Waller; Sue A. Yocum


Bioorganic & Medicinal Chemistry Letters | 2007

Potent, selective spiropyrrolidine pyrimidinetrione inhibitors of MMP-13

Kevin Daniel Freeman-Cook; Lawrence A. Reiter; Mark C. Noe; Amy S. Antipas; Dennis E. Danley; Kaushik Datta; James T. Downs; Shane Allen Eisenbeis; James D. Eskra; David J. Garmene; Elaine M. Greer; Richard J. Griffiths; Roberto E. Guzman; Joel R. Hardink; Fouad Janat; Christopher S. Jones; Gary J. Martinelli; Peter G. Mitchell; Ellen R. Laird; Jennifer Liras; Lori L. Lopresti-Morrow; Jayvardhan Pandit; Usa Reilly; Donald G. Robertson; Marcie L. Vaughn-Bowser; Lilli A. Wolf-Gouviea; Sue A. Yocum


Biochemical Pharmacology | 1996

Determining selectivity of drugs by quantitative two-dimensional gel analysis: A study of tenidap, piroxicam, and dexamethasone

Ivan G. Otterness; Gaston O. Daumy; Merton G. Gollaher; James T. Downs; Timothy J. Zuzel; Marcia L. Bliven; Joseph M. Merenda

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