Jan U.H. Eitel

Using in-situ measurements to evaluate the new RapidEye™ satellite series for prediction of wheat nitrogen status

This study assessed whether vegetation indices derived from broadband RapidEye™ data containing the red edge region (690–730 nm) equal those computed from narrow band data in predicting nitrogen (N) status of spring wheat (Triticum aestivum L.). Various single and combined indices were computed from in‐situ spectroradiometer data and simulated RapidEye™ data. A new, combined index derived from the Modified Chlorophyll Absorption Ratio Index (MCARI) and the second Modified Triangular Vegetation Index (MTVI2) in ratio obtained the best regression relationships with chlorophyll meter values (Minolta Soil Plant Analysis Development (SPAD) 502 chlorophyll meter) and flag leaf N. For SPAD, r 2 values ranged from 0.45 to 0.69 (p<0.01) for narrow bands and from 0.35 and 0.77 (p<0.01) for broad bands. For leaf N, r 2 values ranged from 0.41 to 0.68 (p<0.01) for narrow bands and 0.37 to 0.56 (p<0.01) for broad bands. These results are sufficiently promising to suggest that MCARI/MTVI2 employing broadband RapidEye™ data is useful for predicting wheat N status.

Spectral analysis of charcoal on soils: implicationsfor wildland fire severity mapping methods

Recent studies in the Western United States have supported climate scenarios that predict a higher occurrence of large and severe wildfires. Knowledge of the severity is important to infer long-term biogeochemical, ecological, and societal impacts, but understanding the sensitivity of any severity mapping method to variations in soil type and increasing charcoal (char) cover is essential before widespread adoption. Through repeated spectral analysis of increasing charcoal quantities on six representative soils, we found that addition of charcoal to each soil resulted in linear spectral mixing. We found that performance of the Normalised Burn Ratio was highly sensitive to soil type, whereas the Normalised Difference Vegetation Index was relatively insensitive. Our conclusions have potential implications for national programs that seek to monitor long-term trends in wildfire severity and underscore the need to collect accurate soils information when evaluating large-scale wildland fires.

Active ground optical remote sensing for improved monitoring of seedling stress in nurseries.

Active ground optical remote sensing (AGORS) devices mounted on overhead irrigation booms could help to improve seedling quality by autonomously monitoring seedling stress. In contrast to traditionally used passive optical sensors, AGORS devices operate independently of ambient light conditions and do not require spectral reference readings. Besides measuring red (590–670 nm) and near-infrared (>760 nm) reflectance AGORS devices have recently become available that also measure red-edge (730 nm) reflectance. We tested the hypothesis that the additional availability of red-edge reflectance information would improve AGORS of plant stress induced chlorophyll breakdown in Scots pine (Pinus sylvestris). Our results showed that the availability of red-edge reflectance information improved AGORS estimates of stress induced variation in chlorophyll concentration (r2 > 0.73, RMSE < 1.69) when compared to those without (r2 = 0.57, RMSE = 2.11).

Assessing leaf photoprotective mechanisms using terrestrial LiDAR: towards mapping canopy photosynthetic performance in three dimensions

Terrestrial laser scanning (TLS) data allow spatially explicit (x, y, z) laser return intensities to be recorded throughout a plant canopy, which could considerably improve our understanding of how physiological processes vary in three-dimensional space. However, the utility of TLS data for the quantification of plant physiological properties remains largely unexplored. Here, we test whether the laser return intensity of green (532-nm) TLS correlates with changes in the de-epoxidation state of the xanthophyll cycle and photoprotective non-photochemical quenching (NPQ), and compare the ability of TLS to quantify these parameters with the passively measured photochemical reflectance index (PRI). We exposed leaves from five plant species to increasing light intensities to induce NPQ and de-epoxidation of violaxanthin (V) to antheraxanthin (A) and zeaxanthin (Z). At each light intensity, the green laser return intensity (GLRI), narrowband spectral reflectance, chlorophyll fluorescence emission and xanthophyll cycle pigment composition were recorded. Strong relationships between both predictor variables (GLRI, PRI) and both explanatory variables (NPQ, xanthophyll cycle de-epoxidation) were observed. GLRI holds promise to provide detailed (mm) information about plant physiological status to improve our understanding of the patterns and mechanisms driving foliar photoprotection. We discuss the potential for scaling these laboratory data to three-dimensional canopy space.

Shrub characterization using terrestrial laser scanning and implications for airborne LiDAR assessment

Sagebrush-steppe ecosystems across the United States Intermountain West are experiencing major structural and functional changes. Scientists and managers need effective technologies to understand such dynamic changes across broad spatial scales. We tested the capacity of terrestrial laser scanning (TLS) to automatically determine structural information of individual shrubs (principally Artemisia tridentata) and shrub canopies in eastern Washington, USA. Because current airborne LiDAR systems have technological constraints that may limit their utility in shrub-dominated ecosystems, we used the TLS data both in their basic form and to simulate high resolution discrete-return airborne LiDAR data with sample densities of 4 and 16 points m−2. Through spatial wavelet analysis we automatically detected the locations of up to 78% of all individual shrubs identified in the field and up to 88% of shrubs with a crown diameter > 1.5 m. Shrub height and canopy cover derived from TLS data were significantly correlated with field measurements (respectively, r2 = 0.94 and 0.51, p < 0.001, α = 0.05). Automated detection of individual shrub crown area using the high resolution simulated airborne LiDAR dataset was also significantly correlated with field measurements (r2 = 0.47, p ≤ 0.01). Our results indicate that TLS data are useful for automatic quantification of shrub structure and provide a glimpse to the utility of the next generation of small-footprint airborne LiDAR instruments in quantifying shrub biophysical parameters across broad areas.

Improved Salient Feature-Based Approach for Automatically Separating Photosynthetic and Nonphotosynthetic Components Within Terrestrial Lidar Point Cloud Data of Forest Canopies

Accurate separation of photosynthetic and nonphotosynthetic components in a forest canopy from 3-D terrestrial laser scanning (TLS) data is a challenging but of key importance to understand the spatial distribution of the radiation regime, photosynthetic processes, and carbon and water exchanges of the forest canopy. The objective of this paper was to improve current methods for separating photosynthetic and nonphotosynthetic components in TLS data of forest canopies by adding two additional filters only based on its geometric information. By comparing the proposed approach with the eigenvalues plus color information-based method, we found that the proposed approach could effectively improve the overall producers accuracy from 62.12% to 95.45%, and the overall classification producers accuracy would increase from 84.28% to 97.80% as the forest leaf area index (LAI) decreases from 4.15 to 3.13. In addition, variations in tree species had negligible effects on the final classification accuracy, as shown by the overall producers accuracy for coniferous (93.09%) and broadleaf (94.96%) trees. To remove quantitatively the effects of the woody materials in a forest canopy for improving TLS-based LAI estimates, we also computed the “woody-to-total area ratio” based on the classified linear class points from an individual tree. Automatic classification of the forest point cloud data set will facilitate the application of TLS on retrieving 3-D forest canopy structural parameters, including LAI and leaf and woody area ratios.

Accuracy of WAAS-Enabled GPS-RF Warning Signals When Crossing a Terrestrial Geofence.

Geofences are virtual boundaries based on geographic coordinates. When combined with global position system (GPS), or more generally global navigation satellite system (GNSS) transmitters, geofences provide a powerful tool for monitoring the location and movements of objects of interest through proximity alarms. However, the accuracy of geofence alarms in GNSS-radio frequency (GNSS-RF) transmitter receiver systems has not been tested. To achieve these goals, a cart with a GNSS-RF locator was run on a straight path in a balanced factorial experiment with three levels of cart speed, three angles of geofence intersection, three receiver distances from the track, and three replicates. Locator speed, receiver distance and geofence intersection angle all affected geofence alarm accuracy in an analysis of variance (p = 0.013, p = 2.58 × 10−8, and p = 0.0006, respectively), as did all treatment interactions (p < 0.0001). Slower locator speed, acute geofence intersection angle, and closest receiver distance were associated with reduced accuracy of geofence alerts.

Retrieving Directional Gap Fraction, Extinction Coefficient, and Effective Leaf Area Index by Incorporating Scan Angle Information From Discrete Aerial Lidar Data

The scan angle information implicitly contained within the 3-D point cloud data (PCD) generated from light detection and ranging strongly affects the retrieval accuracy of the forest canopy structural parameters. Using information generated from overlapping aerial laser scanning (ALS) flight paths with multiple scan angles over a forest canopy can help to remove the occlusion effects between foliage elements, ultimately creating a relative comprehensive PCD. In this paper, we develop a novel physically based scan angle correction algorithm to retrieve the effective leaf area index (LAIe) of a forest canopy using ALS. Furthermore, we investigate the effects of scan angle and the number of ALS overpass lines from adjacent flight paths over a forest canopy on directional gap fraction (DGF) estimates. Our results suggest that ALS-based LAIe estimates capture 71.35% of the variations in LAIe derived from digital hemispherical photography. A forest canopy point cloud created using PCD from multiple overlapping ALS flight paths was sufficient to quantitatively reveal the anisotropy characteristics of DGF variations. These results suggest that scan angle information should not be neglected in retrieving forest canopy structural parameters, especially when using ALS data collected with a wide scan angle (i.e., -30° to 30° in this paper). Finally, this paper provides a solid foundation to characterize the 3-D spatial distribution of a forest radiation regime using ALS-based forest PCD.

Remote Sensing Based Simple Models of GPP in Both Disturbed and Undisturbed Piñon-Juniper Woodlands in the Southwestern U.S.

Remote sensing is a key technology that enables us to scale up our empirical, in situ measurements of carbon uptake made at the site level. In low leaf area index ecosystems typical of semi-arid regions however, many assumptions of these remote sensing approaches fall short, given the complexities of the heterogeneous landscape and frequent disturbance. Here, we investigated the utility of remote sensing data for predicting gross primary production (GPP) in pinon-juniper woodlands in New Mexico (USA). We developed a simple model hierarchy using climate drivers and satellite vegetation indices (VIs) to predict GPP, which we validated against in situ estimates of GPP from eddy-covariance. We tested the influence of pixel size on model fit by comparing model performance when using VIs from RapidEye (5 m) and the VIs from Landsat ETM+ (30 m). We also tested the ability of the normalized difference wetness index (NDWI) and normalized difference red edge (NDRE) to improve model fits. The best predictor of GPP at the undisturbed PJ woodland was Landsat ETM+ derived NDVI (normalized difference vegetation index), whereas at the disturbed site, the red-edge VI performed best (R2adj of 0.92 and 0.90 respectively). The RapidEye data did improve model performance, but only after we controlled for the variability in sensor view angle, which had a significant impact on the apparent cover of vegetation in our low fractional cover experimental woodland. At both sites, model performance was best either during non-stressful growth conditions, where NDVI performed best, or during severe ecosystem stress conditions (e.g., during the girdling process), where NDRE and NDWI improved model fit, suggesting the inclusion of red-edge leveraging and moisture sensitive VI in simple, data driven models can constrain GPP estimate uncertainty during periods of high ecosystem stress or disturbance.

Impacts of Airborne Lidar Pulse Density on Estimating Biomass Stocks and Changes in a Selectively Logged Tropical Forest

Airborne lidar is a technology well-suited for mapping many forest attributes, including aboveground biomass (AGB) stocks and changes in selective logging in tropical forests. However, trade-offs still exist between lidar pulse density and accuracy of AGB estimates. We assessed the impacts of lidar pulse density on the estimation of AGB stocks and changes using airborne lidar and field plot data in a selectively logged tropical forest located near Paragominas, Para, Brazil. Field-derived AGB was computed at 85 square 50 × 50 m plots in 2014. Lidar data were acquired in 2012 and 2014, and for each dataset the pulse density was subsampled from its original density of 13.8 and 37.5 pulses·m−2 to lower densities of 12, 10, 8, 6, 4, 2, 0.8, 0.6, 0.4 and 0.2 pulses·m−2. For each pulse density dataset, a power-law model was developed to estimate AGB stocks from lidar-derived mean height and corresponding changes between the years 2012 and 2014. We found that AGB change estimates at the plot level were only slightly affected by pulse density. However, at the landscape level we observed differences in estimated AGB change of >20 Mg·ha−1 when pulse density decreased from 12 to 0.2 pulses·m−2. The effects of pulse density were more pronounced in areas of steep slope, especially when the digital terrain models (DTMs) used in the lidar derived forest height were created from reduced pulse density data. In particular, when the DTM from high pulse density in 2014 was used to derive the forest height from both years, the effects on forest height and the estimated AGB stock and changes did not exceed 20 Mg·ha−1. The results suggest that AGB change can be monitored in selective logging in tropical forests with reasonable accuracy and low cost with low pulse density lidar surveys if a baseline high-quality DTM is available from at least one lidar survey. We recommend the results of this study to be considered in developing projects and national level MRV systems for REDD+ emission reduction programs for tropical forests.