Jan Vávra
Academy of Sciences of the Czech Republic
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Publication
Featured researches published by Jan Vávra.
Journal of the American Chemical Society | 2014
Lubomír Pospíšil; Lucie Bednárová; Petr Štěpánek; Petr Slavíček; Jan Vávra; Magdaléna Hromadová; Helena Dlouhá; Ján Tarábek; Filip Teplý
Two-step redox switching in enantiopure helquat system [P-1](2+) ⇌ [P-1](•+) ⇌ [P-1](0) is demonstrated. The viologen-type electroactive unit embedded directly in the helical scaffold of 1 is responsible for the prominent chiroptical switching at 264 nm. This process is associated with a marked sign-reversal of Cotton effect ramping between Δε = +35 M(-1) cm(-1) for [P-1](2+) and Δε = -100 M(-1) cm(-1) for [P-1](0). This helically chiral system features the most intense chiroptical switch response documented in the field of helicenoids.
Electrophoresis | 2011
Dušan Koval; Lukáš Severa; Louis Adriaenssens; Jan Vávra; Filip Teplý; Václav Kašička
Enantiomers of helical N‐heteroaromatic dications, helquats, were separated by CE. An acidic 22/35u2009mM sodium/phosphate background electrolyte, pH 2.4, with addition of randomly sulfated α‐, β‐ and γ‐ cyclodextrins allowed enantioresolution of a series of helquats, which comprised 5, 6 and 7 fused rings participating in the helical backbone. In general, at least one of the chiral selectors was found to provide baseline separation for 22 out of 24 helquats and partial separation for the remaining two. Individually, the sulfated γ‐cyclodextrin turned out to separate 79% of the helquats, followed by the β‐ and α‐congeners with 54 and 42% of the resolved compounds, respectively. Migration order of enantiomers was inspected for selected helquats and a relation of molecular size of the analytes to a cavity of the cyclodextrin selectors is discussed.
Chemical Science | 2011
Louis Adriaenssens; Lukáš Severa; Dušan Koval; Ivana Císařová; Marta Martínez Belmonte; Eduardo C. Escudero-Adán; Pavlína Novotná; Petra Sázelová; Jan Vávra; Radek Pohl; David Šaman; Marie Urbanová; Václav Kašička; Filip Teplý
A dicationic [6]helicene congener captured on the racemization pathway in its saddle-shaped geometry is introduced. Synthesis, structure, resolution, and dynamic properties of this chiral [6]saddlequat in-between and its highly stereocontrolled transformation into enantiopure [6]helquat are discussed and demonstrated. The dynamic aspects established by experiment and supported by detailed DFT-D calculations are presented visually in the form of a movie (electronic table-of-contents and electronic supplementary information). The title [6]saddlequat was found to be an isolable chiral species on the entirely chiral enantiomerization pathway of a [6]helquat that is discussed as an example of Mislows “rubber glove” molecule.
Nano Letters | 2012
Dora Balogh; Zhanxia Zhang; Alessandro Cecconello; Jan Vávra; Lukáš Severa; Filip Teply; Itamar Willner
Au nanoparticles (NPs) are functionalized with chiral (R) or (S) binaphthol phenylboronic acid ligands, (1a) or (1b). The (R)- or (S)-binaphthol phenylboronic acid ligands form donor-acceptor complexes with the chiral dicationic helicene, helquat (P)-HQ(2+) or (M)-HQ(2+), (2a) or (2b). The association constants between (1a)/(2a) and (1a)/(2b) correspond to (7.0 ± 0.5) × 10(5) M(-1) and (2.5 ± 0.3) × 10(5) M(-1), respectively, whereas the association constants between (1b)/(2b) and (1b)/(2a) correspond to (4.0 ± 0.5) × 10(5) M(-1) and (1.8 ± 0.3) × 10(5) M(-1), respectively. Chiroselective aggregation of chiral binaphthol phenylboronic acid-capped Au NPs triggered by the chiral helquats, is demonstrated.
Journal of Organic Chemistry | 2016
Benjamin J. Coe; Daniela Rusanova; Vishwas Joshi; Sergio Sánchez; Jan Vávra; Dushant Khobragade; Lukáš Severa; Ivana Císařová; David Šaman; Radek Pohl; Koen Clays; Griet Depotter; Bruce S. Brunschwig; Filip Teplý
Helquat dyes combine a cationic hemicyanine with a helicene-like motif to form a new blueprint for chiral systems with large and tunable nonlinear optical (NLO) properties. We report a series of such species with characterization, including determination of static first hyperpolarizabilities β0 via hyper-Rayleigh scattering and Stark spectroscopy. The measured β0 values are similar to or substantially larger than that of the commercial chromophore E-4-(dimethylamino)-N-methyl-4-stilbazolium. Density functional theory (DFT) and time-dependent DFT calculations on two of the new cations are used to probe their molecular electronic structures and optical properties. Related molecules are expected to show bulk second-order NLO effects in even nonpolar media, overcoming a key challenge in developing useful materials.
Scientific Reports | 2017
Bokai Zhang; Xi Feng; Hang Yin; Zhenpeng Ge; Yanhuan Wang; Zhiqin Chu; Helena Raabova; Jan Vávra; Petr Cigler; Ren-Bao Liu; Yi Wang; Quan Li
Nanoparticle-cell interactions begin with the cellular uptake of the nanoparticles, a process that eventually determines their cellular fate. In the present work, we show that the morphological features of nanodiamonds (NDs) affect both the anchoring and internalization stages of their endocytosis. While a prickly ND (with sharp edges/corners) has no trouble of anchoring onto the plasma membrane, it suffers from difficult internalization afterwards. In comparison, the internalization of a round ND (obtained by selective etching of the prickly ND) is not limited by its lower anchoring amount and presents a much higher endocytosis amount. Molecular dynamics simulation and continuum modelling results suggest that the observed difference in the anchoring of round and prickly NDs likely results from the reduced contact surface area with the cell membrane of the former, while the energy penalty associated with membrane curvature generation, which is lower for a round ND, may explain its higher probability of the subsequent internalization.
Journal of Medicinal Chemistry | 2016
Zora Novakova; Krystyna M. Wozniak; Andrej Jancarik; Rana Rais; Ying Wu; Jiri Pavlicek; Dana Ferraris; Barbora Havlinova; Jakub Ptacek; Jan Vávra; Niyada Hin; Camilo Rojas; Pavel Majer; Barbara S. Slusher; Takashi Tsukamoto; Cyril Barinka
Inhibition of glutamate carboxypeptidase II (GCPII) is effective in preclinical models of neurological disorders associated with excessive activation of glutamatergic systems. Here we report synthesis, structural characterization, and biological activity of new hydroxamic acid-based inhibitors with nanomolar affinity for human GCPII. Crystal structures of GCPII/hydroxamate complexes revealed an unprecedented binding mode in which the putative P1 glutarate occupies the spacious entrance funnel rather than the conserved glutamate-binding S1 pocket. This unique binding mode provides a mechanistic explanation for the structure-activity relationship data, most notably the lack of enantiospecificity and the tolerance for bulky/hydrophobic functions as substituents of a canonical glutarate moiety. The in vivo pharmacokinetics profile of one of the inhibitors will be presented along with analgesic efficacy data from the rat chronic constrictive injury model of neuropathic pain.
Journal of Physical Chemistry A | 2017
Laura E. R. Buckley; Benjamin J. Coe; Daniela Rusanova; Vishwas Joshi; Sergio Sánchez; Michael Jirásek; Jan Vávra; Dushant Khobragade; Lukáš Severa; Ivana Císařová; David Šaman; Radek Pohl; Koen Clays; Griet Depotter; Bruce S. Brunschwig; Filip Teplý
Fourteen new dipolar cations have been synthesized, containing methoxy or tertiary amino electron donor groups attached to helquat (Hq) acceptors. These Hq derivatives have been characterized as their TfO- salts by using various techniques including NMR and electronic absorption spectroscopies. UV-vis spectra show intense, relatively low energy absorptions with λmax ≈ 400-600 nm, attributable to intramolecular charge-transfer (ICT) excitations. Single-crystal X-ray structures have been solved for two of the chromophores, one as its PF6- salt, revealing centrosymmetric packing arrangements (space groups Pbca and P1̅). Molecular quadratic nonlinear optical (NLO) responses have been determined directly by using hyper-Rayleigh scattering (HRS) with a 800 nm laser, and indirectly via Stark (electroabsorption) spectroscopy for the low energy absorption bands. The obtained static first hyperpolarizabilities β0 range from moderate to large: (9-140) × 10-30 esu from HRS in MeCN and (44-580) × 10-30 esu from the Stark data in PrCN. The magnitude of β0 increases upon either extending the π-conjugation length or replacing a methoxy with a tertiary amino electron donor substituent. Density functional theory (DFT) and time-dependent DFT calculations on selected tertiary amino chromophores confirm that the low energy absorptions have ICT character. Relatively good agreement between the simulated and experimental UV-vis absorption spectra is achieved by using the CAM-B3LYP functional with the 6-311G(d) basis set. The βtot values predicted by using DFT at the same level of theory are large ((472-1443) × 10-30 esu in MeCN). Both the theoretical and experimental results show that para-conjugation between Hq and electron donor fragments is optimal, and enlarging the Hq unit is inconsequential with respect to the molecular quadratic NLO response.
Journal of Medicinal Chemistry | 2017
Rana Rais; Jan Vávra; Tomáš Tichý; Ranjeet Prasad Dash; Alexandra J. Gadiano; Lukáš Tenora; Lenka Monincová; Cyril Bařinka; Jesse Alt; Sarah C. Zimmermann; C. Ethan Slusher; Ying Wu; Krystyna M. Wozniak; Pavel Majer; Takashi Tsukamoto; Barbara S. Slusher
4-Carboxy-α-[3-(hydroxyamino)-3-oxopropyl]-benzenepropanoic acid 1 is a potent hydroxamate-based inhibitor of glutamate carboxypeptidase II. In an attempt to improve its poor oral pharmacokinetics, we synthesized a series of prodrugs by masking its hydrophilic hydroxamate group. Prodrugs were evaluated for oral availability in mice and showed varying degree of plasma exposure to 1. Of these, para-acetoxybenzyl-based, 4-(5-(((4-acetoxybenzyl)oxy)amino)-2-carboxy-5-oxopentyl)benzoic acid, 12, provided 5-fold higher plasma levels of 1 compared to oral administration of 1 itself. Subsequently, para-acetoxybenzyl-based prodrugs with additional ester promoiety(ies) on carboxylate(s) were examined for their ability to deliver 1 to plasma. Isopropyloxycarbonyloxymethyl (POC) ester 30 was the only prodrug that achieved substantial plasma levels of 1. In vitro metabolite identification studies confirmed stability of the ethyl ester of benzoate while the POC group was rapidly hydrolyzed. At oral daily dose-equivalent of 3 mg/kg, 12 exhibited analgesic efficacy comparable to dose of 10 mg/kg of 1 in the rat chronic constrictive injury model of neuropathic pain.
Journal of Medicinal Chemistry | 2018
Sarah C. Zimmermann; Tomáš Tichý; Jan Vávra; Ranjeet Prasad Dash; C. Ethan Slusher; Alexandra J. Gadiano; Ying Wu; Andrej Jančařík; Lukáš Tenora; Lenka Monincová; Eva Prchalová; Gregory J. Riggins; Pavel Majer; Barbara S. Slusher; Rana Rais
Mebendazole (MBZ) was developed as a broad-spectrum anthelmintic but has recently shown efficacy as an anticancer agent. The use of MBZ for cancer, however, is challenging due to its poor solubility leading to poor bioavailability. Herein, we developed a prodrug approach with various N-linked promoieties including acyloxymethyl, aminoacyloxymethyl, and substituted phosphonooxymethyl in attempt to improve these characteristics. Compound 12, containing an (((((isopropoxycarbonyl)oxy)methoxy)phosphoryl)oxy)methyl promoiety, showed a >10u202f000-fold improvement in aqueous solubility. When evaluated in mice, 12 displayed a 2.2-fold higher plasma AUC0- t and a 1.7-fold improvement in brain AUC0- t with a calculated oral bioavailability of 52%, as compared to 24% for MBZ-polymorph C (MBZ-C), the most bioavailable polymorph. In dogs, 12 showed a 3.8-fold higher plasma AUC0- t with oral bioavailability of 41% compared to 11% for MBZ-C. In summary, we have identified a prodrug of MBZ with better physicochemical properties and enhanced bioavailability in both mice and dog.