Jason Bini

Improvement of attenuation correction in time-of-flight PET/MR imaging with a positron-emitting source.

Quantitative PET imaging relies on accurate attenuation correction. Recently, there has been growing interest in combining state-of-the-art PET systems with MR imaging in a sequential or fully integrated setup. As CT becomes unavailable for these systems, an alternative approach to the CT-based reconstruction of attenuation coefficients (μ values) at 511 keV must be found. Deriving μ values directly from MR images is difficult because MR signals are related to the proton density and relaxation properties of tissue. Therefore, most research groups focus on segmentation or atlas registration techniques. Although studies have shown that these methods provide viable solutions in particular applications, some major drawbacks limit their use in whole-body PET/MR. Previously, we used an annulus-shaped PET transmission source inside the field of view of a PET scanner to measure attenuation coefficients at 511 keV. In this work, we describe the use of this method in studies of patients with the sequential time-of-flight (TOF) PET/MR scanner installed at the Icahn School of Medicine at Mount Sinai, New York, NY. Methods: Five human PET/MR and CT datasets were acquired. The transmission-based attenuation correction method was compared with conventional CT-based attenuation correction and the 3-segment, MR-based attenuation correction available on the TOF PET/MR imaging scanner. Results: The transmission-based method overcame most problems related to the MR-based technique, such as truncation artifacts of the arms, segmentation artifacts in the lungs, and imaging of cortical bone. Additionally, the TOF capabilities of the PET detectors allowed the simultaneous acquisition of transmission and emission data. Compared with the MR-based approach, the transmission-based method provided average improvements in PET quantification of 6.4%, 2.4%, and 18.7% in volumes of interest inside the lung, soft tissue, and bone tissue, respectively. Conclusion: In conclusion, a transmission-based technique with an annulus-shaped transmission source will be more accurate than a conventional MR-based technique for measuring attenuation coefficients at 511 keV in future whole-body PET/MR studies.

Preclinical evaluation of MR attenuation correction versus CT attenuation correction on a sequential whole-body MR/PET scanner.

ObjectivesThe application of attenuation correction for combined magnetic resonance/positron emission tomography (MR/PET) systems is still a major challenge for accurate quantitative PET. Computed tomographic attenuation correction (CTAC) is the current clinical standard for PET/computed tomographic (CT) scans. Magnetic resonance, unlike CT, has no direct information about photon attenuation but, rather, proton densities. On combined MR/PET scanners, MR-based attenuation correction (MRAC) consists of assigning empirical attenuation coefficients to MR signal intensities. The objective of the current study was to evaluate the MRAC implemented on the combined MR/PET scanner versus the CTAC with the same PET data in an animal model. Materials and MethodsAcquisition was performed using a clinically approved sequential MR/PET scanner (Philips Ingenuity TF). Computed tomographic and MR/PET images of 20 New Zealand White rabbits were retrospectively analyzed. The animals were positioned on a customized animal bed to avoid movement between the CT and MR/PET scanners. Positron emission tomographic images from both methods (MRAC and CTAC) were generated. Voxel-by-voxel and region-of-interest (ROI) analyses were performed to determine differences in standardized uptake values (SUV). Regions of interest were drawn on the coregistered CT images for the aorta, liver, kidney, spine, and soft tissue (muscle) and superimposed on the PET images. ResultsThe voxel-by-voxel comparison of PET showed excellent correlation between MRAC and CTAC SUV values (R = 0.99; P < 0.0001). The mean of the difference of SUVs between all respective MRAC and CTAC voxels was −0.94% (absolute difference [AD] ± SD, −0.06 ± 0.30), confirming slight underestimation of MRAC. The ROI-based comparison similarly showed that MRAC SUV values were underestimated compared with CTAC SUV values. The mean difference between MRAC and CTAC for all ROIs was 10.8% (AD, −0.08 ± 0.06; R = 0.99; P < 0.0001) and −9.7% (AD, −0.15 ± 0.12; R = 0.99; P < 0.0001) for the SUV mean (SUVmean) and the SUV maximum (SUVmax), respectively. The highest differences were found in the spine (SUVmean −26.1% [−0.11]) and areas close to large bones such as the back muscles (SUVmean, −16.8% [−0.04]). ConclusionsIn this study, we have compared MRAC and CTAC methods for PET attenuation correction in an animal model. We have confirmed that the MRAC method implemented on a sequential MR/PET scanner underestimates PET values by less than 10% in most regions, except the areas containing or close to large bone structures such as the spine or the back muscles. Bone segmentation is therefore suggested to be included in the MR attenuation map to minimize the quantification error of MRAC methods compared with the clinical standard CTAC. Further clinical studies need to be carried out to validate the clinical use of MRAC.

Attenuation correction for flexible magnetic resonance coils in combined magnetic resonance/positron emission tomography imaging.

IntroductionAttenuation correction for magnetic resonance (MR) coils is a new challenge that came about with the development of combined MR and positron emission tomography (PET) imaging. This task is difficult because such coils are not directly visible on either PET or MR acquisitions with current combined scanners and are therefore not easily localized in the field of view. This issue becomes more evident when trying to localize flexible MR coils (eg, cardiac or body matrix coil) that change position and shape from patient to patient and from one imaging session to another. In this study, we proposed a novel method to localize and correct for the attenuation and scatter of a flexible MR cardiac coil, using MR fiducial markers placed on the surface of the coil to allow for accurate registration of a template computed tomography (CT)–based attenuation map. Materials and MethodsTo quantify the attenuation properties of the cardiac coil, a uniform cylindrical water phantom injected with 18F-fluorodeoxyglucose (18F-FDG) was imaged on a sequential MR/PET system with and without the flexible cardiac coil. After establishing the need to correct for the attenuation of the coil, we tested the feasibility of several methods to register a precomputed attenuation map to correct for the attenuation. To accomplish this, MR and CT visible markers were placed on the surface of the cardiac flexible coil. Using only the markers as a driver for registration, the CT image was registered to the reference image through a combination of rigid and deformable registration. The accuracy of several methods was compared for the deformable registration, including B-spline, thin-plate spline, elastic body spline, and volume spline. Finally, we validated our novel approach both in phantom and patient studies. ResultsThe findings from the phantom experiments indicated that the presence of the coil resulted in a 10% reduction in measured 18F-FDG activity when compared with the phantom-only scan. Local underestimation reached 22% in regions of interest close to the coil. Various registration methods were tested, and the volume spline was deemed to be the most accurate, as measured by the Dice similarity metric. The results of our phantom experiments showed that the bias in the 18F-FDG quantification introduced by the presence of the coil could be reduced by using our registration method. An overestimation of only 1.9% of the overall activity for the phantom scan with the coil attenuation map was measured when compared with the baseline phantom scan without coil. A local overestimation of less than 3% was observed in the ROI analysis when using the proposed method to correct for the attenuation of the flexible cardiac coil. Quantitative results from the patient study agreed well with the phantom findings. ConclusionsWe presented and validated an accurate method to localize and register a CT-based attenuation map to correct for the attenuation and scatter of flexible MR coils. This method may be translated to clinical use to produce quantitatively accurate measurements with the use of flexible MR coils during MR/PET imaging.

Markerless attenuation correction for carotid MRI surface receiver coils in combined PET/MR imaging.

The purpose of the study was to evaluate the effect of attenuation of MR coils on quantitative carotid PET/MR exams. Additionally, an automated attenuation correction method for flexible carotid MR coils was developed and evaluated. The attenuation of the carotid coil was measured by imaging a uniform water phantom injected with 37 MBq of 18F-FDG in a combined PET/MR scanner for 24 min with and without the coil. In the same session, an ultra-short echo time (UTE) image of the coil on top of the phantom was acquired. Using a combination of rigid and non-rigid registration, a CT-based attenuation map was registered to the UTE image of the coil for attenuation and scatter correction. After phantom validation, the effect of the carotid coil attenuation and the attenuation correction method were evaluated in five subjects. Phantom studies indicated that the overall loss of PET counts due to the coil was 6.3% with local region-of-interest (ROI) errors reaching up to 18.8%. Our registration method to correct for attenuation from the coil decreased the global error and local error (ROI) to 0.8% and 3.8%, respectively. The proposed registration method accurately captured the location and shape of the coil with a maximum spatial error of 2.6 mm. Quantitative analysis in human studies correlated with the phantom findings, but was dependent on the size of the ROI used in the analysis. MR coils result in significant error in PET quantification and thus attenuation correction is needed. The proposed strategy provides an operator-free method for attenuation and scatter correction for a flexible MRI carotid surface coil for routine clinical use.

Simultaneous carotid PET/MR: feasibility and improvement of magnetic resonance-based attenuation correction

Errors in quantification of carotid positron emission tomography (PET) in simultaneous PET/magnetic resonance (PET/MR) imaging when not incorporating bone in MR-based attenuation correction (MRAC) maps, and possible solutions, remain to be fully explored. In this study, we demonstrated techniques to improve carotid vascular PET/MR quantification by adding a bone tissue compartment to MRAC maps and deriving continuous Dixon-based MRAC (MRACCD) maps. We demonstrated the feasibility of applying ultrashort echo time-based bone segmentation and generation of continuous Dixon MRAC to improve PET quantification on five subjects. We examined four different MRAC maps: system standard PET/MR MRAC map (air, lung, fat, soft tissue) (MRACPET/MR), standard PET/MR MRAC map with bone (air, lung, fat, soft tissue, bone) (MRACPET/MRUTE), MRACCD map (no bone) and continuous Dixon-based MRAC map with bone (MRACCDUTE). The same PET emission data was then reconstructed with each respective MRAC map and a CTAC map (PETPET/MR, PETPET/MRUTE, PETCD, PECDUTE) to assess effects of the different attenuation maps on PET quantification in the carotid arteries and neighboring tissues. Quantitative comparison of MRAC attenuation values for each method compared to CTAC showed small differences in the carotid arteries with UTE-based segmentation of bone included and/or continuous Dixon MRAC; however, there was very good correlation for all methods in the voxel-by-voxel comparison. ROI-based analysis showed a similar trend in the carotid arteries with the lowest correlation to PETCTAC being PETPETMR and the highest correlation to PETCTAC being PETCDUTE. We have demonstrated the feasibility of applying UTE-based segmentation and continuous Dixon MRAC maps to improve carotid PET/MR vascular quantification.

Attenuation Correction for Magnetic Resonance Coils in Combined PET/MR Imaging: A Review

With the introduction of clinical PET/magnetic resonance (MR) systems, novel attenuation correction methods are needed, as there are no direct MR methods to measure the attenuation of the objects in the field of view (FOV). A unique challenge for PET/MR attenuation correction is that coils for MR data acquisition are located in the FOV of the PET camera and could induce significant quantitative errors. In this review, current methods and techniques to correct for the attenuation of a variety of coils are summarized and evaluated.

Wavelet-based partial volume effect correction for simultaneous MR/PET of the carotid arteries

Simultaneous MR/PET scanners allow for the exploration and development of novel PVE correction techniques without the challenges of coregistration of MR and PET. The development of a wavelet-based PVE correction method, to improve PET quantification, has proven successful in brain PET.2 We report here the first attempt to apply these methods to simultaneous MR/PET imaging of the carotid arteries. The American College of Radiology (ACR) phantom was injected with 18F-FDG for a lesion to background ratio of 2.5. As per ACR protocol, hot cylinders (“lesions”) were injected with 30.71MBq and the phantom background was injected with 12.95MBq. The ACR phantom was then scanned on the Siemens mCT and Siemens Biograph mMR. One patient was injected with 446.6MBq of 18F-FDG and scanned after a circulation time of 90 minutes on the Siemens Biograph mMR. The MR/PET acquisition consisted of the system standard Dixon attenuation correction sequence. Wavelet-based PVE correction was performed to incorporate high frequency wavelet information from MR images into PET images to improve resolution. Qualitative and quantitative uptake parameters where measured to assess the efficacy of the method used. Qualitative comparisons in the ACR phantom and a patient without and with wavelet-based PVE correction demonstrated slight improvement in image quality. Line profiles drawn through the 8mm cylinder and 25mm cylinder and demonstrated an improvement of quantification in the wavelet-based PVE corrected PET image compared to the non-corrected PET image. Standard deviation of SUV before and after PVE correction in the left and right carotid arteries was decreased demonstrating partial volume effect correction. The technique applied here demonstrated an improvement in both resolution and quantification in the phantom and the patient. These results demonstrate the feasibility of wavelet-based PVE correction to provide improved quantification for MR/PET in the carotid arteries.

Radial k-space acquisition improves robustness of MR-based attenuation maps for MR/PET quantification in an animal imaging study of the abdomen

One of the most important steps in positron emission tomography (PET) is the correction of photon attenuation for accurate quantitative PET. Currently, FDA approved clinical MR/PET systems employ segmentation of conventional, low resolution, gradient echo (GRE) based, T1-weighted MR images to generate maps for MR-based attenuation correction (MRAC). However, these acquisitions are optimized for imaging human subjects and exhibit artifacts when used in preclinical MR/PET studies. Pronounced breathing artifacts in animal models used for preclinical imaging, impede accurate segmentation for generation of attenuation maps, impacting quantitative measurements of reconstructed PET images. We propose a radial k-space acquisition sequence designed to redistribute coherent breathing artifacts that result from Cartesian k-space trajectories into incoherent pseudo-noise spread across the image domain. PET data from five rabbits was reconstructed using the system standard MR-derived attenuation map with segmentation errors, due to breathing artifacts in the Cartesian acquisition (cartMR map), the manually segmented MR-derived attenuation map (msegMR map) and the radially acquired MR sequence used to generate an attenuation map from the system standard segmentation algorithm (radMR map). The resulting attenuation corrected PET data sets (PETcartMRmap, PETmsegMRmap, and PETradMRmap) were then qualitatively and quantitatively evaluated. Voxel-by-voxel comparison of PET values for all five rabbits showed excellent correlation between PETmsegMRmap and PETradMRmap SUV values (R=0.999, p0.0001). Bland-Altman plots showed that the mean of the difference of SUVs between PETmsegMRmap and PETradMRmap voxels for all five rabbits was 0.53% (0.004±0.014SD). Region-of-interest-based comparison showed that PETradMRmap and PETmsegMRmap methods differ in SUVmean by -0.7% to 0.9% and SUVmax by -1.2% to 2.7%. Employing a radial k-space MR acquisition during preclinical MR/PET protocols facilitates highly accurate segmentation and PET quantification, without the need for subjective user input and is therefore, better suited for use in preclinical MR/PET protocols than the existing MR Cartesian acquisition.

Evaluation of PET Brain Radioligands for Imaging Pancreatic β-Cell Mass: Potential Utility of 11C-(+)-PHNO

Type 1 diabetes mellitus (T1DM) is characterized by a loss of β-cells in the islets of Langerhans of the pancreas and subsequent deficient insulin secretion in response to hyperglycemia. Development of an in vivo test to measure β-cell mass (BCM) would greatly enhance the ability to track diabetes therapies. β-cells and neurologic tissues have common cellular receptors and transporters, therefore, we screened brain radioligands for their ability to identify β-cells. Methods: We examined a β-cell gene atlas for endocrine pancreas receptor targets and cross-referenced these targets with brain radioligands that were available at our institution. Twelve healthy control subjects and 2 T1DM subjects underwent dynamic PET/CT scans with 6 tracers. Results: The D2/D3 receptor agonist radioligand 11C-(+)-4-propyl-9-hydroxynaphthoxazine (PHNO) was the only radioligand to demonstrate sustained uptake in the pancreas with high contrast versus abdominal organs such as the kidneys, liver, and spleen, based on the first 30 min of data. Mean SUV from 20 to 30 min demonstrated high uptake of 11C-(+)-PHNO in healthy controls (SUV, 13.8) with a 71% reduction in a T1DM subject with undetectable levels of C-peptide (SUV, 4.0) and a 20% reduction in a T1DM subject with fasting C-peptide level of 0.38 ng/mL (SUV, 11.0). SUV in abdominal organs outside the pancreas did not show measurable differences between the control and T1DM subjects, suggesting that the changes in SUV of 11C-(+)-PHNO may be specific to changes in the pancreas between healthy controls and T1DM subjects. When D3 and D2 antagonists were used in nonhuman primates, specific pancreatic binding (SUVR-1) of 11C-PHNO was reduced by 57% and 38%, respectively. Conclusion: 11C-(+)-PHNO is a potential marker of BCM, with 2:1 binding of D3 receptors over D2 receptors. Further in vitro and in vivo studies to establish D2/D3 receptor specificity to β-cells is warranted to characterize 11C-(+)-PHNO as a candidate for clinical measurement of BCM in healthy control and diabetic subjects.

Reduced cognitive function, increased bloodbrain-barrier transport and inflammatory responses, and altered brain metabolites in LDLr-/-And C57BL/6 mice fed a western diet

Recent work suggests that diet affects brain metabolism thereby impacting cognitive function. Our objective was to determine if a western diet altered brain metabolism, increased blood-brain barrier (BBB) transport and inflammation, and induced cognitive impairment in C57BL/6 (WT) mice and low-density lipoprotein receptor null (LDLr -/-) mice, a model of hyperlipidemia and cognitive decline. We show that a western diet and LDLr -/- moderately influence cognitive processes as assessed by Y-maze and radial arm water maze. Also, western diet significantly increased BBB transport, as well as microvessel factor VIII in LDLr -/- and microglia IBA1 staining in WT, both indicators of activation and neuroinflammation. Interestingly, LDLr -/- mice had a significant increase in 18F- fluorodeoxyglucose uptake irrespective of diet and brain 1H-magnetic resonance spectroscopy showed increased lactate and lipid moieties. Metabolic assessments of whole mouse brain by GC/MS and LC/MS/MS showed that a western diet altered brain TCA cycle and β-oxidation intermediates, levels of amino acids, and complex lipid levels and elevated proinflammatory lipid mediators. Our study reveals that the western diet has multiple impacts on brain metabolism, physiology, and altered cognitive function that likely manifest via multiple cellular pathways.