Jay P. Zarnetske

Dynamics of nitrate production and removal as a function of residence time in the hyporheic zone

an upland agricultural stream. We measured solute concentrations ( 15 NO3 , 15 N2 (g), as well as NO3 ,N H3, DOC, DO, Cl − ), and hydraulic transport parameters (head, flow rates, flow paths, and residence time distributions) of the reach and along HZ flow paths of an instrumented gravel bar. HZ exchange was observed across the entire gravel bar (i.e., in all wells) with flow path lengths up to 4.2 m and corresponding median residence times greater than 28.5 h. The HZ transitioned from a net nitrification environment at its head (short residence times) to a net denitrification environment at its tail (long residence times). NO3 increased at short residence times from 0.32 to 0.54 mg‐ NL −1 until a threshold of 6.9 h and then consistently decreased from 0.54 to 0.03 mg‐ NL −1 . Along these same flow paths, declines were seen in DO (from 8.31 to 0.59 mg‐O2 L −1 ) and DOC (from 3.0 to 1.7 mg‐ CL −1 ). The rates of the DO and DOC removal and net nitrification were greatest during short residence times, while the rate of denitrification was greatest at long residence times. 15 NO3 tracing confirmed that a fraction of the NO3 removal was via denitrification as 15 N2 was produced across the entire gravel bar HZ. Production of 15 N2 across all observed flow paths and residence times indicated that denitrification microsites are present even where nitrification was the net outcome. These findings demonstrate that the HZ is an active nitrogen sink in this system and that the distinction between net nitrification and denitrification in the HZ is a function of residence time and exhibits threshold behavior. Consequently, incorporation of HZ exchange and water residence time characterizations will improve mechanistic predictions of nitrogen cycling in streams.

A physical explanation for the development of redox microzones in hyporheic flow

Recent observations reveal a paradox of anaerobic respiration occurring in seemingly oxic-saturated sediments. Here we demonstrate a residence time-based explanation for this paradox. Specifically, we show how microzones favorable to anaerobic respiration processes (e.g., denitrification, metal reduction, and methanogenesis) can develop in the embedded less mobile porosity of bulk-oxic hyporheic zones. Anoxic microzones develop when transport time from the streambed to the pore center exceeds a characteristic uptake time of oxygen. A two-dimensional pore-network model was used to quantify how anoxic microzones develop across a range of hyporheic flow and oxygen uptake conditions. Two types of microzones develop: flow invariant and flow dependent. The former is stable across variable hydrologic conditions, whereas the formation and extent of the latter are sensitive to flow rate and orientation. Therefore, pore-scale residence time heterogeneity, which can now be evaluated in situ, offers a simple explanation for anaerobic signals occurring in oxic pore waters.

Quantification of metabolically active transient storage (MATS) in two reaches with contrasting transient storage and ecosystem respiration

a deep alluvial deposit. The MATS zones measured 0.002 m 2 in the bedrock reach (37% of transient storage) and 0.291 m 2 in the alluvial reach (100% of transient storage). The effective rate coefficient of Raz transformation in the MATS of the bedrock reach was approximately 16 times that of the alluvial reach. However, when we take into account the contribution of the MATS zone to overall metabolic activity, Raz transformation in the MATS zone was 2.2 times slower in the bedrock reach than in the alluvial reach. The difference was similar to the difference in ecosystem respiration, which was 1.8 times lower in the bedrock reach than in the alluvial reach, suggesting that the MATS zones were important contributors to ecosystem respiration. Results indicate that the quantification of MATS can improve our understanding of the role that transient storage zones play on stream metabolic processes and demonstrate the utility of Raz as a “smart” tracer that provides new information on metabolic activity at a whole‐reach and at smaller scale. Citation: Argerich, A., R. Haggerty, E. Marti, F. Sabater, and J. Zarnetske (2011), Quantification of metabolically active transient storage (MATS) in two reaches with contrasting transient storage and ecosystem respiration, J. Geophys. Res., 116, G03034, doi:10.1029/2010JG001379.

Hyporheic exchange and water chemistry of two arctic tundra streams of contrasting geomorphology

Received 11 July 2007; revised 29 December 2007; accepted 7 March 2008; published 11 June 2008. [1] The North Slope of Alaska’s Brooks Range is underlain by continuous permafrost, but an active layer of thawed sediments develops at the tundra surface and beneath streambeds during the summer, facilitating hyporheic exchange. Our goal was to understand how active layer extent and stream geomorphology influence hyporheic exchange and nutrient chemistry. We studied two arctic tundra streams of contrasting geomorphology: a highgradient, alluvial stream with riffle-pool sequences and a low-gradient, peat-bottomed stream with large deep pools connected by deep runs. Hyporheic exchange occurred to � 50 cm beneath the alluvial streambed and to only � 15 cm beneath the peat streambed. The thaw bulb was deeper than the hyporheic exchange zone in both stream types. The hyporheic zone was a net source of ammonium and soluble reactive phosphorus in both stream types. The hyporheic zone was a net source of nitrate in the alluvial stream, but a net nitrate sink in the peat stream. The mass flux of nutrients regenerated from the hyporheic zones in these two streams was a small portion of the surface water mass flux. Although small, hyporheic sources of regenerated nutrients help maintain the in-stream nutrient balance. If future warming in the arctic increases the depth of the thaw bulb, it may not increase the vertical extent of hyporheic exchange. The greater impacts on annual contributions of hyporheic regeneration are likely to be due to longer thawed seasons, increased sediment temperatures or changes in geomorphology.

Coupling multiscale observations to evaluate Hyporheic nitrate removal at the reach scale

Excess NO3– in streams is a growing and persistent problem for both inland and coastal ecosystems, and denitrification is the primary removal process for NO3–. Hyporheic zones can have high denitrification potentials, but their role in reach- and network-scale NO3– removal is unknown because it is difficult to estimate. We used independent and complementary multiscale measurements of denitrification and total NO3– uptake to quantify the role of hyporheic NO3– removal in a 303-m reach of a 3rd-order agricultural stream in western Oregon, USA. We characterized the reach-scale NO3– dynamics with steady-state 15N-NO3– tracer-addition experiments and solute-transport modeling, and measured the hyporheic conditions via in-situ biogeochemical and groundwater modeling. We also developed a method to link these independent multiscale measurements. Hyporheic NO3– removal (rate coefficient λHZ = 0.007/h) accounted for 17% of the observed total reach NO3– uptake and 32% of the reach denitrification estimated from the 15N experiments. The primary limitations on hyporheic denitrification at the reach scale were availability of labile dissolved organic C and the restricted size of the hyporheic zone caused by anthropogenic channelization (sediment thickness ≤1.5 m). Linking multiscale methods made estimates possible for hyporheic influence on stream NO3– dynamics. However, it also demonstrated that the traditional reach-scale tracer experimental designs and subsequent transport modeling cannot be used alone to directly investigate the role of the hyporheic zone on reach-scale water and solute dynamics.

Stream solute tracer timescales changing with discharge and reach length confound process interpretation

Improved understanding of stream solute transport requires meaningful comparison of processes across a wide range of discharge conditions and spatial scales. At reach scales where solute tracer tests are commonly used to assess transport behavior, such comparison is still confounded due to the challenge of separating dispersive and transient storage processes from the influence of the advective timescale that varies with discharge and reach length. To better resolve interpretation of these processes from field-based tracer observations, we conducted recurrent conservative solute tracer tests along a 1 km study reach during a storm discharge period and further discretized the study reach into six segments of similar length but different channel morphologies. The resulting suite of data, spanning an order of magnitude in advective timescales, enabled us to (1) characterize relationships between tracer response and discharge in individual segments and (2) determine how combining the segments into longer reaches influences interpretation of dispersion and transient storage from tracer tests. We found that the advective timescale was the primary control on the shape of the observed tracer response. Most segments responded similarly to discharge, implying that the influence of morphologic heterogeneity was muted relative to advection. Comparison of tracer data across combined segments demonstrated that increased advective timescales could be misinterpreted as a change in dispersion or transient storage. Taken together, our results stress the importance of characterizing the influence of changing advective timescales on solute tracer responses before such reach-scale observations can be used to infer solute transport at larger network scales.

Using in-situ optical sensors to study dissolved organic carbon dynamics of streams and watersheds: A review

It is important to understand how dissolved organic carbon (DOC) is processed and transported through stream networks because DOC is a master water quality variable in aquatic ecosystems. High-frequency sampling is necessary to capture important, rapid shifts in DOC source, concentration, and composition (i.e. quality) in streams. Until recently, this high-frequency sampling was logistically difficult or impossible. However, this type of sampling can now be conducted using in-situ optical measurements through long-term, field-deployable fluorometers and spectrophotometers. The optical data collected from these instruments can quantify both DOC concentration and composition properties (e.g., specific ultra-violet absorbance at 254nm, spectral slope ratio, and fluorescence index). Previously, the use of these sensors was limited to a small number of specialized users, mainly in Europe and North America, where they were used predominantly in marine DOC studies as well as water treatment and management infrastructure. However, recent field demonstrations across a wide range of river systems reveals a large potential for the use of these instruments in freshwater environments, heightening interest and demand across multiple environmental research and management disciplines. Hence, this review provides an up-to-date synthesis on 1) the use of spectroscopy as a diagnostic tool in stream DOC studies, 2) the instrumentation, its applications, potential limitations and future considerations, and 3) the new watershed DOC research directions made possible via these in-situ optical sensors.

Multi-offset GPR methods for hyporheic zone investigations

Porosity of stream sediments has a direct effect on hyporheic exchange patterns and rates. Improved estimates of porosity heterogeneity will yield enhanced simulation of hyporheic exchange processes. Ground-penetrating radar (GPR) velocity measurements are strongly controlled by water content thus accurate measures of GPR velocity in saturated sediments provides estimates of porosity beneath stream channels using petrophysical relationships. Imaging the substream system using surface based reflection measurements is particularly challenging due to large velocity gradients that occur at the transition from open water to saturated sediments. The continuous multi-offset method improves the quality of subsurface images through stacking and provides measurements of vertical and lateral velocity distributions. We applied the continuous multi-offset method to stream sites on the North Slope, Alaska and the Sawtooth Mountains near Boise, Idaho, USA. From the continuous multi-offset data, we measure velocity using reflection tomography then estimate water content and porosity using the Topp equation. These values provide detailed measurements for improved stream channel hydraulic and thermal modelling.

Woody debris is related to reach-scale hotspots of lowland stream ecosystem respiration under baseflow conditions

Stream metabolism is a fundamental, integrative indicator of aquatic ecosystem functioning. However, it is not well understood how heterogeneity in physical channel form, particularly in relation to and caused by in‐stream woody debris, regulates stream metabolism in lowland streams. We combined conservative and reactive stream tracers to investigate relationships between patterns in stream channel morphology and hydrological transport (form) and metabolic processes as characterized by ecosystem respiration (function) in a forested lowland stream at baseflow. Stream reach‐scale ecosystem respiration was related to locations (“hotspots”) with a high abundance of woody debris. In contrast, nearly all other measured hydrological and geomorphic variables previously documented or hypothesized to influence stream metabolism did not significantly explain ecosystem respiration. Our results suggest the existence of key differences in physical controls on ecosystem respiration between lowland stream systems (this study) and smaller upland streams (most previous studies) under baseflow conditions. As such, these findings have implications for reactive transport models that predict biogeochemical transformation rates from hydraulic transport parameters, for upscaling frameworks that represent biological stream processes at larger network scales, and for the effective management and restoration of aquatic ecosystems.

Impacts of water level on metabolism and transient storage in vegetated lowland rivers - insights from a mesocosm study

Transient storage zones for water represent potential hot spots for metabolic activity in streams. In lowland rivers, the high abundance of submerged vegetation can increase water transient storage, bioreactive surface areas and, ultimately, in-stream metabolic activity. Changes in flow resulting from climatic and anthropogenic factors that influence the presence of aquatic vegetation can also, thereby, impact in-stream metabolism and nutrient cycling. We investigated the effects of water column depth on aquatic vegetation cover and its implications on water transient storage and associated metabolic activity in stream mesocosms (n=8) that represent typical conditions of lowland streams. Continuous injections of metabolically reactive (resazurin-resorufin) tracers were conducted and used to quantify hydraulic transport and whole-mesocosm aerobic respiration. Acetate, a labile carbon source, was added during a second stage of the tracer injection to investigate metabolic responses. We observed both higher vegetation coverage and resazurin uptake velocity, used as a proxy of mesocosm respiration, with increasing water column depth. The acetate injection had a slight, positive effect on metabolic activity. A hydrodynamic model estimated the water transport and retention characteristics and first-order reactivity for three mesocosms. These results suggest that both the vegetated surface water and sediments contribute to metabolically active transient storage within the mesocosms, with vegetation having a greater influence on ecosystem respiration. Our findings suggest that climate and external factors that affect flow and submerged vegetation of lowland rivers will result in changes in stream respiration dynamics and that submerged vegetation are a particularly important and sensitive location for stream respiration.