Jean-Christophe Clément

Water table elevation controls on soil nitrogen cycling in riparian wetlands along a European climatic gradient

Riparian zones have long been considered as nitrate sinks in landscapes. Yet, riparian zones are also known to be very productive ecosystems with a high rate of nitrogen cycling. A key factor regulating processes in the N cycle in these zones is groundwater table fluctuation, which controls aerobic/anaerobic conditions in the soil. Nitrification and denitrification, key processes regulating plant productivity and nitrogen buffering capacities are strictly aerobic and anaerobic processes, respectively. In this study we compared the effects of these factors on the nitrogen cycling in riparian zones under different climatic conditions and N loading at the European scale. No significant differences in nitrification and denitrification rates were found either between climatic regions or between vegetation types. On the other hand, water table elevation turned out to be the prime determinant of the N dynamics and its end product. Three consistent water table thresholds were identified. In sites where the water table level is within −10 cm of the soil surface, ammonification is the main process and ammonium accumulates in the topsoils. Average water tables between −10 and −30 cm favour denitrification and therefore reduce the nitrogen availability in soils. In drier sites, that is, water table level below −30 cm, nitrate accumulates as a result of high net nitrification. At these latter sites, denitrification only occurs in fine textured soils probably triggered by rainfall events. Such a threshold could be used to provide a proxy to translate the consequences of stream flow regime change to nitrogen cycling in riparian zones and consequently, to potential changes in nitrogen mitigation.

Nitrogen Removal by Riparian Buffers along a European Climatic Gradient: Patterns and Factors of Variation

AbstractWe evaluated nitrogen (N) removal efficiency by riparian buffers at 14 sites scattered throughout seven European countries subject to a wide range of climatic conditions. The sites also had a wide range of nitrate inputs, soil characteristics, and vegetation types. Dissolved forms of N in groundwater and associated hydrological parameters were measured at all sites; these data were used to calculate nitrate removal by the riparian buffers. Nitrate removal rates (expressed as the difference between the input and output nitrate concentration in relation to the width of the riparian zone) were mainly positive, ranging from 5% m−1 to 30% m−1, except for a few sites where the values were close to zero. Average N removal rates were similar for herbaceous (4.43% m−1) and forested (4.21% m−1) sites. Nitrogen removal efficiency was not affected by climatic variation between sites, and no significant seasonal pattern was detected. When nitrate inputs were low, a very large range of nitrate removal efficiencies was found both in the forested and in the nonforested sites. However, sites receiving nitrate inputs above 5 mg N L−1 showed an exponential negative decay of nitrate removal efficiency (nitrate removal efficiency = 33.6 e−0.11 NO3input, r2 = 0.33, P < 0.001). Hydraulic gradient was also negatively related to nitrate removal (r = −0.27, P < 0.05) at these sites. On the basis of this intersite comparison, we conclude that the removal of nitrate by biological mechanisms (for example, denitrification, plant uptake) in the riparian areas is related more closely to nitrate load and hydraulic gradient than to climatic parameters.

Water table fluctuations in the riparian zone: comparative results from a pan-European experiment

Soil saturation is known to be of crucial importance to denitrification and other nitrogen cycling processes within the riparian zone. Since denitrification potential generally increases towards the soil surface, water table elevation can control the degree to which nitrate reduction is optimised. Given their topographic location and sedimentary structure, most floodplains are characterised by high water tables. However, detailed field data on water table levels, hydraulic gradients and flow patterns within the riparian zone are generally lacking. This paper presents data collected as part of a pan-European study of nitrate buffer zones, the Nitrogen Control by Landscape Structures in Agricultural Environments project (NICOLAS). An identical experimental design was employed at each site, allowing riparian zone hydrology and nitrogen cycling processes to be explored across a wide range of temperate climates; only the hydrological data are discussed here. A grid of dipwells at 10-metre spacing was installed at each site and manual measurements made at least once a month for a minimum of one year. In addition, at least one dipwell in each grid was monitored continuously using a data logger. All the riparian zones studied displayed a clear annual cycle of water table elevation, although other factors seemed equally important in influencing the range of variation. Where the riparian zone was flat, the water level in the adjoining river or lake proved more significant in controlling water table levels within the riparian zone than was originally anticipated.

Relative contributions of plant traits and soil microbial properties to mountain grassland ecosystem services.

Summary 1. Plant functional diversity and soil microbial community composition are tightly coupled. Changes in these interactions may influence ecosystem functioning. Links between plant functional diversity, soil microbial communities and ecosystem functioning have been demonstrated in experiments using plant monocultures and mixtures, using broad plant and microbial functional groups, but have not been examined in diverse natural plant communities. 2. We quantified the relative effects of plant and microbial functional properties on key ecosystem functions. We measured plant functional diversity, soil microbial community composition and parameters associated with nitrogen (N) cycling and key nutrient cycling processes at three grassland sites in different parts of Europe. Because plant structure and function strongly influence soil microbial communities, we determined relationships between ecosystem properties, plant traits and soil community characteristics following a sequential approach in which plant traits were fitted first, followed by the additional effects of soil micro-organisms. 3. We identified a continuum from standing green biomass and standing litter, linked mostly with plant traits, to potential N mineralization and potential leaching of soil inorganic N, linked mostly with microbial properties. Plant and microbial functional parameters were equally important in explaining % organic matter content in soil. A parallel continuum ran from plant height, linked with above-ground biomass, to plant quality effects captured by the leaf economics spectrum, which were linked with the recycling of carbon (C) and N. 4. More exploitative species (higher specific leaf area, leaf N concentrations and lower leaf dry matter content) and taller swards, along with soil microbial communities dominated by bacteria, with rapid microbial activities, were linked with greater fodder production, but poor C and N retention. Conversely, dominance by conservative species (with opposite traits) and soil microbial communities dominated by fungi, and bacteria with slow activities, were usually linked with low production, but greater soil C storage and N retention. 5. Synthesis – Grassland production, C sequestration and soil N retention are jointly related to plant and microbial functional traits. Managing grasslands for selected, or multiple, ecosystem services will thus require a consideration of the joint effects of plant and soil communities. Further understanding of the mechanisms that link plant and microbial functional traits is essential to achieve this.

Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.

DNA metabarcoding refers to the DNA‐based identification of multiple species from a single complex and degraded environmental sample. We developed new sampling and extraction protocols suitable for DNA metabarcoding analyses targeting soil extracellular DNA. The proposed sampling protocol has been designed to reduce, as much as possible, the influence of local heterogeneity by processing a large amount of soil resulting from the mixing of many different cores. The DNA extraction is based on the use of saturated phosphate buffer. The sampling and extraction protocols were validated first by analysing plant DNA from a set of 12 plots corresponding to four plant communities in alpine meadows, and, second, by conducting pilot experiments on fungi and earthworms. The results of the validation experiments clearly demonstrated that sound biological information can be retrieved when following these sampling and extraction procedures. Such a protocol can be implemented at any time of the year without any preliminary knowledge of specific types of organisms during the sampling. It offers the opportunity to analyse all groups of organisms using a single sampling/extraction procedure and opens the possibility to fully standardize biodiversity surveys.

The effects of snowpack properties and plant strategies on litter decomposition during winter in subalpine meadows

AimsClimate-induced changes in snow cover are likely to affect cold arctic and alpine ecosystems functioning and major processes such as wintertime plant litter decomposition. However, it remains poorly studied in subalpine systems where the snowpack may be irregular. In this paper we explored the dynamic of the winter plant litter decomposition process, its magnitude and its relationship with the snowpack properties.MethodsIn subalpine grasslands of the Central French Alps, we performed a litter bag experiment monitoring over a whole winter the litter decomposition from the exploitative Dactylis glomerata and the conservative Festuca paniculata, under two contiguous experimental sites with snowpacks differing in depth and physical properties.ResultsLitter decomposition rates were stable during winter and 3-fold higher under deeper and permanent snowpack with higher thermal resistance. Litter quality appeared only significant under thinner snowpack with higher decomposition rates for the exploitative species. A snowpack with higher thermal resistance created an insulating layer promoting the decomposition process.ConclusionThese results suggest that the temporal (permanence vs. intermittency) and physical (depth and thermal resistance) characteristics of the snowpack should be considered when studying the response of winter ecosystems functioning to global changes.

Microorganisms in Dry Polar Snow Are Involved in the Exchanges of Reactive Nitrogen Species with the Atmosphere

The snowpack is a complex photochemical reactor that emits a wide variety of reactive molecules to the atmosphere. In particular, the photolysis of nitrate ions, NO(3)(-), produces NO, NO(2), and HONO, which affects the oxidative capacity of the atmosphere. We report measurements in the European High Arctic where we observed for the first time emissions of NO, NO(2), and HONO by the seasonal snowpack in winter, in the complete or near-complete absence of sunlight and in the absence of melting. We also detected unusually high concentrations of nitrite ions, NO(2)(-), in the snow. These results suggest that microbial activity in the snowpack is responsible for the observed emissions. Isotopic analysis of NO(2)(-) and NO(3)(-) in the snow confirm that these ions, at least in part, do not have an atmospheric origin and are most likely produced by the microbial oxidation of NH(4)(+) coming from clay minerals into NO(2)(-) and NO(3)(-). These metabolic pathways also produce NO. Subsequent dark abiotic reactions lead to NO(2) and HONO production. The snow cover is therefore not only an active photochemical reactor but also a biogeochemical reactor active in the cycling of nitrogen and it can affect atmospheric composition all year round.

Contribution of above- and below-ground plant traits to the structure and function of grassland soil microbial communities

BACKGROUND AND AIMS Abiotic properties of soil are known to be major drivers of the microbial community within it. Our understanding of how soil microbial properties are related to the functional structure and diversity of plant communities, however, is limited and largely restricted to above-ground plant traits, with the role of below-ground traits being poorly understood. This study investigated the relative contributions of soil abiotic properties and plant traits, both above-ground and below-ground, to variations in microbial processes involved in grassland nitrogen turnover. METHODS In mountain grasslands distributed across three European sites, a correlative approach was used to examine the role of a large range of plant functional traits and soil abiotic factors on microbial variables, including gene abundance of nitrifiers and denitrifiers and their potential activities. KEY RESULTS Direct effects of soil abiotic parameters were found to have the most significant influence on the microbial groups investigated. Indirect pathways via plant functional traits contributed substantially to explaining the relative abundance of fungi and bacteria and gene abundances of the investigated microbial communities, while they explained little of the variance in microbial activities. Gene abundances of nitrifiers and denitrifiers were most strongly related to below-ground plant traits, suggesting that they were the most relevant traits for explaining variation in community structure and abundances of soil microbes involved in nitrification and denitrification. CONCLUSIONS The results suggest that consideration of plant traits, and especially below-ground traits, increases our ability to describe variation in the abundances and the functional characteristics of microbial communities in grassland soils.

15N-Nitrate signature in low-order streams : effects of land cover and agricultural practices

Many studies have shown that intensive agricultural practices significantly increase the nitrogen concentration of stream surface waters, but it remains difficult to identify, quantify, and differentiate between terrestrial and in-stream sources or sinks of nitrogen, and rates of transformation. In this study we used the delta15N-NO3 signature in a watershed dominated by agriculture as an integrating marker to trace (1) the effects of the land cover and agricultural practices on stream-water N concentration in the upstream area of the hydrographic network, (2) influence of the in-stream processes on the NO3-N loads at the reach scale (100 m and 1000 m long), and (3) changes in delta15N-NO3 signature with increasing stream order (from first to third order). This study suggests that land cover and fertilization practices were the major determinants of delta15N-NO3 signature in first-order streams. NO3-N loads and delta15N-NO3 signature increased with fertilization intensity. Small changes in delta15N-NO3 signature and minor inputs of groundwater were observed along both types of reaches, suggesting the NO3-N load was slightly influenced by in-stream processes. The variability of NO3-N concentrations and delta15N signature decreased with increasing stream order, and the delta15N signature was positively correlated with watershed areas devoted to crops, supporting a dominant effect of agriculture compared to the effect of in-stream N processing. Consequently, land cover and fertilization practices are integrated in the natural isotopic signal at the third-order stream scale. The GIS analysis of the land cover coupled with natural-abundance isotope signature (delta15N) represents a potential tool to evaluate the effects of agricultural practices in rural catchments and the consequences of future changes in management policies at the regional scale.

Elevation alters ecosystem properties across temperate treelines globally

Temperature is a primary driver of the distribution of biodiversity as well as of ecosystem boundaries. Declining temperature with increasing elevation in montane systems has long been recognized as a major factor shaping plant community biodiversity, metabolic processes, and ecosystem dynamics. Elevational gradients, as thermoclines, also enable prediction of long-term ecological responses to climate warming. One of the most striking manifestations of increasing elevation is the abrupt transitions from forest to treeless alpine tundra. However, whether there are globally consistent above- and belowground responses to these transitions remains an open question. To disentangle the direct and indirect effects of temperature on ecosystem properties, here we evaluate replicate treeline ecotones in seven temperate regions of the world. We find that declining temperatures with increasing elevation did not affect tree leaf nutrient concentrations, but did reduce ground-layer community-weighted plant nitrogen, leading to the strong stoichiometric convergence of ground-layer plant community nitrogen to phosphorus ratios across all regions. Further, elevation-driven changes in plant nutrients were associated with changes in soil organic matter content and quality (carbon to nitrogen ratios) and microbial properties. Combined, our identification of direct and indirect temperature controls over plant communities and soil properties in seven contrasting regions suggests that future warming may disrupt the functional properties of montane ecosystems, particularly where plant community reorganization outpaces treeline advance.