Jean-Marc Angibault

Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach

Changes in agricultural practices and forest fragmentation can have a dramatic effect on landscape connectivity and the dispersal of animals, potentially reducing gene flow within populations. In this study, we assessed the influence of woodland connectivity on gene flow in a traditionally forest‐dwelling species — the European roe deer — in a fragmented landscape. From a sample of 648 roe deer spatially referenced within a study area of 55 × 40 km, interindividual genetic distances were calculated from genotypes at 12 polymorphic microsatellite loci. We calculated two geographical distances between each pair of individuals: the Euclidean distance (straight line) and the ‘least cost distance’ (the trajectory that maximizes the use of wooded corridors). We tested the correlation between genetic pairwise distances and the two types of geographical pairwise distance using Mantel tests. The correlation was better using the least cost distance, which takes into account the distribution of wooded patches, especially for females (the correlation was stronger but not significant for males). These results suggest that in a fragmented woodland area roe deer dispersal is strongly linked to wooded structures and hence that gene flow within the roe deer population is influenced by the connectivity of the landscape.

Genetic structure is influenced by landscape features: empirical evidence from a roe deer population

The delimitation of population units is of primary importance in population management and conservation biology. Moreover, when coupled with landscape data, the description of population genetic structure can provide valuable knowledge about the permeability of landscape features, which is often difficult to assess by direct methods (e.g. telemetry). In this study, we investigated the genetic structuring of a roe deer population which recently recolonized a fragmented landscape. We sampled 1148 individuals from a 40 × 55‐km area containing several putative barriers to deer movements, and hence to gene flow, namely a highway, rivers and several canals. In order to assess the effect of these landscape features on genetic structure, we implemented a spatial statistical model known as geneland which analyses genetic structure, explicitly taking into account the spatial nature of the problem. Two genetic units were inferred, exhibiting a very low level of differentiation (FST = 0.008). The location of their boundaries suggested that there are no absolute barriers in this study area, but that the combination of several landscape features with low permeability can lead to population differentiation. Our analysis hence suggests that the landscape has a significant influence on the structuring of the population under study. It also illustrates the use of geneland as a powerful method to infer population structure, even in situations of young populations exhibiting low genetic differentiation.

Can Dental Microwear Textures Record Inter-Individual Dietary Variations?

Background Dental microwear analyses are commonly used to deduce the diet of extinct mammals. Conventional methods rely on the user identifying features within a 2D image. However, recent interdisciplinary research has lead to the development of an advanced methodology that is free of observer error, based on the automated quantification of 3D surfaces by combining confocal microscopy with scale-sensitive fractal analysis. This method has already proved to be very efficient in detecting dietary differences between species. Focusing on a finer, intra-specific scale of analysis, the aim of this study is to test this methods ability to track such differences between individuals from a single population. Methodology/Principal Findings For the purposes of this study, the 3D molar microwear of 78 individuals from a well-known population of extant roe deer (Capreolus caprelous) is quantified. Multivariate statistical analyses indicate significant seasonal and sexual differences in individual dental microwear design. These are probably the consequence of seasonal variations in fruit, seed and leaf availability, as well as differences in feeding preference between males and females due to distinct energy requirements during periods of rutting, gestation or giving birth. Nevertheless, further investigations using two-block Partial Least-Squares analysis show no strong relationship between individual stomach contents and microwear texture. This is an expected result, assuming that stomach contents are composed of food items ingested during the last few hours whereas dental microwear texture records the physical properties of items eaten over periods of days or weeks. Conclusions/Significance Microwear 3D scale-sensitive fractal analysis does detect differences in diet ranging from the inter-feeding styles scale to the intra-population between-season and between-sex scales. It is therefore a possible tool, to be used with caution, in the further exploration of the feeding biology and ecology of extinct mammals.

Landscape composition influences roe deer habitat selection at both home range and landscape scales

Understanding how patterns of habitat selection vary in relation to landscape structure is essential to predict ecological responses of species to global change and inform management. We investigated behavioural plasticity in habitat selection of roe deer (Capreolus capreolus) in relation to variable habitat availability across a heterogeneous agricultural landscape at the home range and landscape scales. As expected, woodland was heavily selected, but we found no functional response for this habitat, i.e. no shift in habitat selection with changing habitat availability, possibly due to the presence of hedgerows which were increasingly selected as woodlands were less abundant. Hedgerows may thus function as a substitutable habitat for woodlands by providing roe deer with similar resources. We observed a functional response in the use of hedgerows, implying some degree of landscape complementation between hedgerows and open habitats, which may in part compensate for lower woodland availability. We also expected selection for woodland to be highest at the wider spatial scale, especially when this habitat was limiting. However, our results did not support this hypothesis, but rather indicated a marked influence of habitat composition, as both the availability and distribution of resources conditioned habitat selection. There was no marked between-sex difference in the pattern of habitat selection at either scale or between seasons at the landscape scale, however, within the home range, selection did differ between seasons. We conclude that landscape structure has a marked impact on roe deer habitat selection in agricultural landscapes through processes such as landscape complementation and supplementation.

Testing Global Positioning System Performance for Wildlife Monitoring Using Mobile Collars and Known Reference Points

Abstract To determine the spatial resolution of Global Positioning System (GPS) receiver data, rigorous testing is essential. We tested performance of the Lotek 3300 GPS collar for medium-sized mammals (Lotek Engineering, Inc., Newmarket, ON, Canada). To mimic real wildlife monitoring situations, we performed both static (stationary receiver) and mobile tests, placing the receiver collar on a dog. We compared fix locations of the mobile receiver with the actual trajectory described by a portable Trimble high-precision GPS. We determined performance in relation to habitat type and leaf cover. Location error was habitat-dependent, with the best results in open habitat and much poorer ones in forest, particularly coniferous-dominated forest. For both static and mobile tests, location accuracy was higher when the number of satellites contacted was high and when the residual positional dilution of precision (PDOP) value was low. However, location error was highly variable, even for a given PDOP value and a given number of satellites contacted. Finally, mobile collars performed less well than their static counterparts, presumably because of frequent changes of GPS position and orientation.

The Effect of Capture on Ranging Behaviour and Activity of the European Roe Deer Capreolus capreolus

Locating and monitoring animals using tracking devices is a method commonly used for many taxa to study characteristics such as home-range size, habitat selection, movement patterns and other aspects of ranging behaviour. Fitting such devices requires the capture and handling of the study organism and researchers must then assume that a monitored animal behaves in a ‘normal’ way. We investigated whether the capture and handling of roe deer Capreolus capreolus induced behavioural alterations. In particular, we expected that the roe deer would exhibit a ‘seeking a refuge and waiting before returning’ strategy immediately after release, taking shelter far from the capture scene, in closed habitat, and exhibiting a reduced activity level. We evaluated the effect of capture and handling on 112 roe deer equipped with GPS collars, during a period of 50 days after release. We compared the first 10 days after release with the subsequent days for the following behavioural parameters: distance to the barycentre of their GPS fixes, presence in forest habitat, distance to the nearest forest patch, distance to a source of human disturbance, and activity level. We found pronounced differences in terms of spatial behaviour, habitat use and overall activity level between the two periods in GPS monitored roe deer. We also found differences in terms of spatial displacement between the sexes, with females responding less than males, and among age classes, with yearlings responding most and fawns least, to the capture and handling event. Finally, spatial displacement of roe deer increased with openness of the habitat due, in part, to the scarcity of available shelter in open areas. We conclude that the roe deer exhibited a strategy consisting of seeking a refuge and waiting before returning after capture, handling and fitting of a collar, with displacement towards a refuge habitat, in or near woodland, avoidance of sources of human disturbance and reduced activity levels. From a practical point of view, we recommend removing data during the first days of monitoring as behavioural alterations due to capture and handling may be pronounced.

Landscape fragmentation generates spatial variation of diet composition and quality in a generalist herbivore

Forest fragmentation may benefit generalist herbivores by increasing access to various substitutable food resources, with potential consequences for their population dynamics. We studied a European roe deer (Capreolus capreolus) population living in an agricultural mosaic of forest, woodlots, meadows and cultivated crops. We tested whether diet composition and quality varied spatially across the landscape using botanical analyses of rumen contents and chemical analyses of the plants consumed in relation to landscape metrics. In summer and non-mast winters, roe deer ate more cultivated seeds and less native forest browse with increasing availability of crops in the local landscape. This spatial variation resulted in contrasting diet quality, with more cell content and lower lignin and hemicellulose content (high quality) for individuals living in more open habitats. The pattern was less marked in the other seasons when diet composition, but not diet quality, was only weakly related to landscape structure. In mast autumns and winters, the consumption of acorns across the entire landscape resulted in a low level of differentiation in diet composition and quality. Our results reflect the ability of generalist species, such as roe deer, to adapt to the fragmentation of their forest habitat by exhibiting a plastic feeding behavior, enabling them to use supplementary resources available in the agricultural matrix. This flexibility confers nutritional advantages to individuals with access to cultivated fields when their native food resources are depleted or decline in quality (e.g. during non-mast years) and may explain local heterogeneities in individual phenotypic quality.

Population density and sex do not influence fine-scale natal dispersal in roe deer.

It is commonly assumed that the propensity to disperse and the dispersal distance of mammals should increase with increasing density and be greater among males than among females. However, most empirical evidence, especially on large mammals, has focused on highly polygynous and dimorphic species displaying female-defence mating tactics. We tested these predictions on roe deer, a weakly polygynous species of large herbivore exhibiting a resource-defence mating tactic at a fine spatial scale. Using three long-term studies of populations that were subject to the experimental manipulation of size, we did not find any support for either prediction, whether in terms of dispersal probability or dispersal distance. Our findings of similar dispersal patterns in both sexes of roe deer suggest that the underlying cause of natal dispersal is not related to inbreeding avoidance in this species. The absence of positive density dependence in fine-scale dispersal behaviour suggests that roe deer natal dispersal is a pre-saturation process that is shaped by heterogeneities in habitat quality rather than by density per se.

Using Radio-tracking and Direct Observation to Estimate Roe Deer Capreolus Capreolus Density in a Fragmented Landscape: A Pilot Study

Abstract In this pilot study, we estimate roe deer Capreolus capreolus density in a fragmented landscape, using radio-tracking and direct observation in a Petersen-Lincoln framework with the joint hypergeometric maximum likelihood estimator. We used radio-tracking to obtain a direct count of the number of marked animals potentially observable in a given sample area, thus avoiding edge effects. We then carried out a coordinated observation survey, including drive beating, to ascertain the proportion of marked roe deer in the population sampled and thus generate a population estimate. Surveys were repeated three times in four sample blocks within the fragmented landscape, and estimates were compared to a sample block of a central forest in the same area. In general, roe deer are difficult to observe and census, but our experimental set-up in the fragmented landscape enabled us to observe on average 75% of marked animals present in a given survey (compared to 21.5% in the central forest). The variability in capture probability between individuals was low as three quarters of all marked individuals were observed in all, or all but one, of the surveys. Density estimates were largely similar across the sample blocks of the fragmented landscape (4.0-7.9 deer/100 ha), but lower than in the central forest (34.3 deer/100 ha). The variability of daily population estimates was quite low and similar in the fragmented landscape (CV of 25.9%) and the central forest (CV of 25.3%). Taking availability of woodland into account, the density in the fragmented landscape was as high, or higher, than in the central forest, reaching an exceptional 145.3 deer/100 ha of woodland in one survey area.

Ranging behaviour and excursions of female roe deer during the rut

Anecdotal evidence has suggested that, during the rutting period, female roe deer may undertake short excursions, outside of their normal home range, possibly to mate with a reproductive partner. To address this question, we analysed the ranging behaviour of 27 female roe deer Capreolus capreolus, equipped with GPS collars, inhabiting a fragmented landscape in France. We compared female movements during the rutting period with a non-rutting period over two summers using a recently published approach. Search intensity and home range size were significantly greater during the rutting period. The difference in home range size between the two periods was significantly greater in 2006 compared to 2005 and in open compared to closed habitat. We were not able to identify any influence of body mass on the difference in ranging behaviour between the two periods. Visual analysis of movement trajectories for 11 females revealed that 5 (45%) performed an excursion for a duration of a few hours to several days. We speculatively suggest that female rut excursions provide an opportunity for active mate choice in roe deer, where males are territorial, although we cannot rule out the alternative explanation that these movements are a means to avoid male harassment.