Jeffrey N. Martin
University of California, San Francisco
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Featured researches published by Jeffrey N. Martin.
Nature Medicine | 2006
Jason M. Brenchley; David A. Price; Timothy W. Schacker; Tedi E. Asher; Guido Silvestri; Srinivas S. Rao; Zachary Kazzaz; Ethan Bornstein; Olivier Lambotte; Daniel M. Altmann; Bruce R. Blazar; Benigno Rodriguez; Leia Teixeira-Johnson; Alan Landay; Jeffrey N. Martin; Frederick Hecht; Louis J. Picker; Michael M. Lederman; Steven G. Deeks
Chronic activation of the immune system is a hallmark of progressive HIV infection and better predicts disease outcome than plasma viral load, yet its etiology remains obscure. Here we show that circulating microbial products, probably derived from the gastrointestinal tract, are a cause of HIV-related systemic immune activation. Circulating lipopolysaccharide, which we used as an indicator of microbial translocation, was significantly increased in chronically HIV-infected individuals and in simian immunodeficiency virus (SIV)-infected rhesus macaques (P ≤ 0.002). We show that increased lipopolysaccharide is bioactive in vivo and correlates with measures of innate and adaptive immune activation. Effective antiretroviral therapy seemed to reduce microbial translocation partially. Furthermore, in nonpathogenic SIV infection of sooty mangabeys, microbial translocation did not seem to occur. These data establish a mechanism for chronic immune activation in the context of a compromised gastrointestinal mucosal surface and provide new directions for therapeutic interventions that modify the consequences of acute HIV infection.
The New England Journal of Medicine | 2009
Mari M. Kitahata; Stephen J. Gange; Alison G. Abraham; Barry Merriman; Michael S. Saag; Amy C. Justice; Robert S. Hogg; Steven G. Deeks; Joseph J. Eron; John T. Brooks; Sean B. Rourke; M. John Gill; Ronald J. Bosch; Jeffrey N. Martin; Marina B. Klein; Lisa P. Jacobson; Benigno Rodriguez; Timothy R. Sterling; Gregory D. Kirk; Sonia Napravnik; Anita Rachlis; Liviana Calzavara; Michael A. Horberg; Michael J. Silverberg; Kelly A. Gebo; James J. Goedert; Constance A. Benson; Ann C. Collier; Stephen E. Van Rompaey; Heidi M. Crane
BACKGROUND The optimal time for the initiation of antiretroviral therapy for asymptomatic patients with human immunodeficiency virus (HIV) infection is uncertain. METHODS We conducted two parallel analyses involving a total of 17,517 asymptomatic patients with HIV infection in the United States and Canada who received medical care during the period from 1996 through 2005. None of the patients had undergone previous antiretroviral therapy. In each group, we stratified the patients according to the CD4+ count (351 to 500 cells per cubic millimeter or >500 cells per cubic millimeter) at the initiation of antiretroviral therapy. In each group, we compared the relative risk of death for patients who initiated therapy when the CD4+ count was above each of the two thresholds of interest (early-therapy group) with that of patients who deferred therapy until the CD4+ count fell below these thresholds (deferred-therapy group). RESULTS In the first analysis, which involved 8362 patients, 2084 (25%) initiated therapy at a CD4+ count of 351 to 500 cells per cubic millimeter, and 6278 (75%) deferred therapy. After adjustment for calendar year, cohort of patients, and demographic and clinical characteristics, among patients in the deferred-therapy group there was an increase in the risk of death of 69%, as compared with that in the early-therapy group (relative risk in the deferred-therapy group, 1.69; 95% confidence interval [CI], 1.26 to 2.26; P<0.001). In the second analysis involving 9155 patients, 2220 (24%) initiated therapy at a CD4+ count of more than 500 cells per cubic millimeter and 6935 (76%) deferred therapy. Among patients in the deferred-therapy group, there was an increase in the risk of death of 94% (relative risk, 1.94; 95% CI, 1.37 to 2.79; P<0.001). CONCLUSIONS The early initiation of antiretroviral therapy before the CD4+ count fell below two prespecified thresholds significantly improved survival, as compared with deferred therapy.
The Journal of Infectious Diseases | 2003
Peter W. Hunt; Jeffrey N. Martin; Elizabeth Sinclair; Barry M. Bredt; Elilta Hagos; Harry Lampiris; Steven G. Deeks
Although T cell activation is associated with disease progression in untreated human immunodeficiency virus type 1 (HIV-1) infection, its significance in antiretroviral-treated patients is unknown. Activated (CD38(+)HLA-DR(+)) T cell counts were measured in 99 HIV-infected adults who had maintained a plasma HIV RNA level <or=1000 copies/mL for a median of 21 months while receiving antiretroviral therapy. Patients with sustained viral suppression had lower levels of T cell activation than untreated patients but higher levels than HIV-uninfected control subjects. Persistent T cell activation was associated with decreased CD4(+) T cell gains during therapy. For every 5% increase in the proportion of activated CD8(+) T cells, 35 fewer CD4(+) T cells/mm(3) were gained. Increased T cell activation was associated with shorter duration of viral suppression, hepatitis C virus coinfection, frequent low-level viremia, and lower nadir CD4(+) T cell counts. Interventions that directly target T cell activation or the determinants of activation may prove to be useful adjuvants to antiretroviral therapy.
The New England Journal of Medicine | 1998
Jeffrey N. Martin; Don Ganem; Dennis Osmond; Kimberly Page-Shafer; Don Macrae; Dean H. Kedes
BACKGROUND Although human herpesvirus 8 (HHV-8) has been suspected to be the etiologic agent of Kaposis sarcoma, little is known about its seroprevalence in the population, its modes of transmission, and its natural history. METHODS The San Francisco Mens Health Study, begun in 1984, is a study of a population-based sample of men in an area with a high incidence of human immunodeficiency virus (HIV) infection. We studied all 400 men infected at base line with HIV and a sample of 400 uninfected men. Base-line serum samples were assayed for antibodies to HHV-8 latency-associated nuclear antigen (anti-LANA). In addition to the seroprevalence and risk factors for anti-LANA seropositivity, we analyzed the time to the development of Kaposis sarcoma. RESULTS Anti-LANA antibodies were found in 223 of 593 men (37.6 percent) who reported any homosexual activity in the previous five years and in none of 195 exclusively heterosexual men. Anti-LANA seropositivity correlated with a history of sexually transmitted diseases and had a linear association with the number of male sexual-intercourse partners. Among the men who were infected with both HIV and HHV-8 at base line, the 10-year probability of Kaposis sarcoma was 49.6 percent. Base-line anti-LANA seropositivity preceded and was independently associated with subsequent Kaposis sarcoma, even after adjustment for CD4 cell counts and the number of homosexual partners. CONCLUSIONS The prevalence of HHV-8 infection is high among homosexual men, correlates with the number of homosexual partners, and is temporally and independently associated with Kaposis sarcoma. These observations are further evidence that HHV-8 has an etiologic role in Kaposis sarcoma and is sexually transmitted among men.
Nature Genetics | 2007
Maureen P. Martin; Ying Qi; Xiaojiang Gao; Eriko Yamada; Jeffrey N. Martin; Florencia Pereyra; Sara Colombo; Elizabeth E. Brown; W. Lesley Shupert; John P. Phair; James J. Goedert; Susan Buchbinder; Gregory D. Kirk; Amalio Telenti; Mark Connors; Stephen J. O'Brien; Bruce D. Walker; Peter Parham; Steven G. Deeks; Daniel W. McVicar; Mary Carrington
Allotypes of the natural killer (NK) cell receptor KIR3DL1 vary in both NK cell expression patterns and inhibitory capacity upon binding to their ligands, HLA-B Bw4 molecules, present on target cells. Using a sample size of over 1,500 human immunodeficiency virus (HIV)+ individuals, we show that various distinct allelic combinations of the KIR3DL1 and HLA-B loci significantly and strongly influence both AIDS progression and plasma HIV RNA abundance in a consistent manner. These genetic data correlate very well with previously defined functional differences that distinguish KIR3DL1 allotypes. The various epistatic effects observed here for common, distinct KIR3DL1 and HLA-B Bw4 combinations are unprecedented with regard to any pair of genetic loci in human disease, and indicate that NK cells may have a critical role in the natural history of HIV infection.
Circulation | 2004
Priscilla Y. Hsue; Joan C. Lo; Arlana Franklin; Jeffrey N. Martin; Steven G. Deeks; David D. Waters
Background—HIV-infected patients may be at increased risk for coronary events. The purpose of this study was to identify predictors of carotid intima-media thickness (IMT) in HIV patients at baseline and to measure IMT progression over 1 year. Methods and Results—We measured blood lipids, inflammatory markers, and IMT in 148 HIV-infected adults (mean age, 45±8 years) and in 63 age- and sex-matched HIV-uninfected control subjects. The mean duration of HIV infection was 11 years, and the median duration of protease inhibitor treatment was 3.3 years. Mean baseline IMT was 0.91±0.33 mm in HIV patients and 0.74±0.17 mm in control subjects (P =0.0001). Multivariable predictors of baseline IMT in HIV patients were age (P <0.001), LDL cholesterol (P <0.001), cigarette pack-years (P =0.005), Latino race (P =0.062), and hypertension (P =0.074). When the control group was added to the analysis, HIV infection was an independent predictor of IMT (P =0.001). The rate of progression among the 121 HIV patients with a repeated IMT measurement at 1 year was 0.074±0.13 mm, compared with −0.006±0.05 mm in 27 control subjects (P =0.002). Age (P <0.001), Latino race (P =0.02), and nadir CD4 count ≤200 (P =0.082) were multivariable predictors of IMT progression. Conclusions—Carotid IMT is higher in HIV patients than in age-matched control subjects and progresses much more rapidly than previously reported rates in non-HIV cohorts. In HIV patients, carotid IMT is associated with classic coronary risk factors and with nadir CD4 count ≤200, suggesting that immunodeficiency and traditional coronary risk factors may contribute to atherosclerosis.
The Journal of Infectious Diseases | 2008
Peter W. Hunt; Jason M. Brenchley; Elizabeth Sinclair; Joseph M. McCune; Michelle E. Roland; Kimberly Page-Shafer; Priscilla Y. Hsue; Brinda Emu; Melissa R. Krone; Harry Lampiris; Jeffrey N. Martin; Steven G. Deeks
BACKGROUND Although untreated human immunodeficiency virus (HIV)-infected patients maintaining undetectable plasma HIV RNA levels (elite controllers) have high HIV-specific immune responses, it is unclear whether they experience abnormal levels of T cell activation, potentially contributing to immunodeficiency. METHODS We compared percentages of activated (CD38(+)HLA-DR(+)) T cells between 30 elite controllers, 47 HIV-uninfected individuals, 187 HIV-infected individuals with undetectable viremia receiving antiretroviral therapy (antiretroviral therapy suppressed), and 66 untreated HIV-infected individuals with detectable viremia. Because mucosal translocation of bacterial products may contribute to T cell activation in HIV infection, we also measured plasma lipopolysaccharide (LPS) levels. RESULTS Although the median CD4(+) cell count in controllers was 727 cells/mm(3), 3 (10%) had CD4(+) cell counts <350 cells/mm(3) and 2 (7%) had acquired immunodeficiency syndrome. Controllers had higher CD4(+) and CD8(+) cell activation levels (P < .001 for both) than HIV-negative subjects and higher CD8(+) cell activation levels than the antiretroviral therapy suppressed (P = .048). In controllers, higher CD4(+) and CD8(+) T cell activation was associated with lower CD4(+) cell counts (P = .009 and P = .047). Controllers had higher LPS levels than HIV-negative subjects (P < .001), and in controllers higher LPS level was associated with higher CD8(+) T cell activation (P = .039). CONCLUSION HIV controllers have abnormally high T cell activation levels, which may contribute to progressive CD4(+) T cell loss even without measurable viremia.
The Journal of Infectious Diseases | 2009
Wei Jiang; Michael M. Lederman; Peter W. Hunt; Scott F. Sieg; Kathryn Haley; Benigno Rodriguez; Alan Landay; Jeffrey N. Martin; Elizabeth Sinclair; Ava I. Asher; Steven G. Deeks; Jason M. Brenchley
The significance of elevated plasma levels of bacterial lipopolysaccharide (LPS) in persons with chronic HIV infection remains undefined. We measured LPS levels by use of limulus lysate assay, and DNA sequences encoding bacterial ribosomal 16S RNA (16S rDNA) were assessed by quantitative polymerase chain reactions in plasma samples obtained from 242 donors. Plasma levels of 16S rDNA were significantly higher in human immunodeficiency virus (HIV)-infected subjects than in uninfected subjects, and they correlated with LPS levels. Higher levels of 16S rDNA were associated with higher levels of T cell activation and with lower levels of CD4 T cell restoration during antiretroviral therapy. Antiretroviral therapy reduces but does not fully normalize plasma levels of bacterial 16S rDNA, an index of microbial translocation from the gastrointestinal tract. High levels of 16S rDNA during therapy are strongly associated with reduced increases in the CD4(+) T lymphocyte count, irrespective of plasma HIV RNA levels. These findings are consistent with the importance of microbial translocation in immunodeficiency and T cell homeostasis in chronic HIV infection.
Science Translational Medicine | 2010
David Favre; Jeff E. Mold; Peter W. Hunt; Bittoo Kanwar; P'ng Loke; Lillian Seu; Jason D. Barbour; Margaret M. Lowe; Jayawardene A; Francesca T. Aweeka; Yong Huang; Daniel C. Douek; Jason M. Brenchley; Jeffrey N. Martin; Frederick Hecht; Steven G. Deeks; Joseph M. McCune
Patients with AIDS have fewer immune cells to defend against microbial invasion through the gut, a critical loss that may be caused by a tryptophan metabolite produced by other immune cells. Loss of the Defenders at the Gate Like archers stationed along the walls of a medieval castle, the immune system patrols the vulnerable parts of our body to keep pathogens at bay. One of these susceptible areas is the mucosa of the gastrointestinal tract, which is continually exposed to ingested and resident pathogens. This defense breaks down in patients with AIDS, in which sentinel immune cells [T helper 17 (TH17) cells] are missing from the gastrointestinal lining, potentially accounting for some secondary infections acquired by these patients. Favre and colleagues present evidence that the loss of these cells (and a parallel increase in immune suppressor cells) is caused by a metabolite of the amino acid tryptophan, new understanding that should help to prevent this serious consequence of HIV infection. HIV disease is in part an inflammatory disease, and activated T cells and cytokines circulate in patients’ blood, along with pathogen-derived molecules that trigger the innate immune system. The authors show that, in patients with serious AIDS, who are in this inflammatory state, the enzyme indoleamine 2,3-dioxygenase 1 (IDO1), which catabolizes tryptophan, is elevated in dendritic cells (DCs)—agents that present antigen to the immune system—from the blood, lymph nodes, and mucosa of the lower gastrointestinal tract. The inflammation-related molecules interferon γ and bacterial lipopolysaccharide can induce IDO1 in isolated DCs. This excess IDO1 activation increased blood concentrations of tryptophan catabolites in patients, and two of the catabolites increased the proportion of TH17 (activating) immune cells and decreased the proportion of T regulatory (Treg) (suppressing) immune cells in culture. In patients with serious disease, the authors found that the ratio of TH17 to Treg cells was much lower than normal, which hampers the ability of the body to raise an effective immune defense against pathogens. This dysfunctional system would set up a reinforcing loop that progressively depletes vulnerable tissues of their immune protection. Paradoxically, it seems, activation of the immune system by HIV may be contributing to the decline in immune function that is the hallmark of the disease. IDO1 inhibitors are being tested for their efficacy in interfering with this dangerous depletion of defenses. The pathogenesis of human and simian immunodeficiency viruses is characterized by CD4+ T cell depletion and chronic T cell activation, leading ultimately to AIDS. CD4+ T helper (TH) cells provide protective immunity and immune regulation through different immune cell functional subsets, including TH1, TH2, T regulatory (Treg), and interleukin-17 (IL-17)–secreting TH17 cells. Because IL-17 can enhance host defenses against microbial agents, thus maintaining the integrity of the mucosal barrier, loss of TH17 cells may foster microbial translocation and sustained inflammation. Here, we study HIV-seropositive subjects and find that progressive disease is associated with the loss of TH17 cells and a reciprocal increase in the fraction of the immunosuppressive Treg cells both in peripheral blood and in rectosigmoid biopsies. The loss of TH17/Treg balance is associated with induction of indoleamine 2,3-dioxygenase 1 (IDO1) by myeloid antigen-presenting dendritic cells and with increased plasma concentration of microbial products. In vitro, the loss of TH17/Treg balance is mediated directly by the proximal tryptophan catabolite from IDO metabolism, 3-hydroxyanthranilic acid. We postulate that induction of IDO may represent a critical initiating event that results in inversion of the TH17/Treg balance and in the consequent maintenance of a chronic inflammatory state in progressive HIV disease.
The Journal of Infectious Diseases | 2000
Steven G. Deeks; Jason D. Barbour; Jeffrey N. Martin; Melinda Swanson; Robert M. Grant
The relationship between plasma human immunodeficiency virus (HIV) RNA levels and peripheral CD4+ T cell counts was examined in 380 HIV-infected adults receiving long-term protease inhibitor therapy. Patients experiencing virologic failure (persistent HIV RNA >500 copies RNA/mL) generally had CD4+ T cell counts that remained greater than pretherapy baseline levels, at least through 96 weeks of follow-up. The CD4+ T cell response was directly and independently related to degree of viral suppression below the pretreatment baseline. For any given HIV RNA level measured 12 weeks after virologic failure, subsequent CD4+ T cell decline was slower in patients receiving a protease inhibitor-based regimen than in a historical control group of untreated patients. These observations suggest that transient or partial declines in plasma HIV RNA levels can have sustained effects on CD4+ T cell levels.