Jennifer Cherrier

Coupling biogeochemical cycles in urban environments: ecosystem services, green solutions, and misconceptions

Urban green space is purported to offset greenhouse-gas (GHG) emissions, remove air and water pollutants, cool local climate, and improve public health. To use these services, municipalities have focused efforts on designing and implementing ecosystem-services-based “green infrastructure” in urban environments. In some cases the environmental benefits of this infrastructure have been well documented, but they are often unclear, unquantified, and/or outweighed by potential costs. Quantifying biogeochemical processes in urban green infrastructure can improve our understanding of urban ecosystem services and disservices (negative or unintended consequences) resulting from designed urban green spaces. Here we propose a framework to integrate biogeochemical processes into designing, implementing, and evaluating the net effectiveness of green infrastructure, and provide examples for GHG mitigation, stormwater runoff mitigation, and improvements in air quality and health.

Uptake of polonium and sulfur by bacteria

Elevated concentrations of polonium‐210, the last radioactive member of the 238U decay series, have been reported for groundwater in a number of shallow wells from the Central Florida Phosphate District. The 210Po must originate either directly from the naturally occurring phosphate rock of the area or from phosphogypsum, a byproduct of the wet‐process manufacture of phosphoric acid. Phosphate rock is characterized by relatively high levels of uranium and daughter products, while phosphogypsum contains high 226Ra, 210Pb, and 210Po. We assessed the potential of a bacterial isolate to remove and incorporate dissolved polonium from solution by conducting comparative radiotracer experiments using 35SO4 and 208Po. Since the observed chemical concentration of Po in these wells is too low to serve in any direct metabolic function, it was suspected that it might be cometabolized as a sulfur analogue. Our experiments were designed to (1) evaluate the rate of 33SO4 and 208Po uptake as a function of bacterial growth...

Impact of sideways and bottom-up control factors on bacterial community succession over a tidal cycle

In aquatic systems, bacterial community succession is a function of top-down and bottom-up factors, but little information exists on “sideways” controls, such as bacterial predation by Bdellovibrio-like organisms (BLOs), which likely impacts nutrient cycling within the microbial loop and eventual export to higher trophic groups. Here we report transient response of estuarine microbiota and BLO spp. to tidal-associated dissolved organic matter supply in a river-dominated estuary, Apalachicola Bay, Florida. Both dissolved organic carbon and dissolved organic nitrogen concentrations oscillated over the course of the tidal cycle with relatively higher concentrations observed at low tide. Concurrent with the shift in dissolved organic matter (DOM) supply at low tide, a synchronous increase in numbers of bacteria and predatorial BLOs were observed. PCR-restriction fragment length polymorphism of small subunit rDNA, cloning, and sequence analyses revealed distinct shifts such that, at low tide, significantly higher phylotype abundances were observed from γ-Proteobacteria, δ-Proteobacteria, Bacteroidetes, and high G+C Gram-positive bacteria. Conversely, diversity of α-Proteobacteria, β-Proteobacteria, and Chlamydiales-Verrucomicrobia group increased at high tides. To identify metabolically active BLO guilds, tidal microcosms were spiked with six 13C-labeled bacteria as potential prey and studied using an adaptation of stable isotope probing. At low tide, representative of higher DOM and increased prey but lower salinity, BLO community also shifted such that mesohaline clusters I and VI were more active; with an increased salinity at high tide, halotolerant clusters III, V, and X were predominant. Eventually, 13C label was identified from higher micropredators, indicating that trophic interactions within the estuarine microbial food web are potentially far more complex than previously thought.

Radiocarbon evidence that carbon from the Deepwater Horizon spill entered the planktonic food web of the Gulf of Mexico

The Deepwater Horizon (Macondo) oil spill released large volumes of oil and gas of distinct carbon isotopic composition to the northern Gulf of Mexico, allowing Graham et al (2010 Environ. Res. Lett. 5 045301) to use stable carbon isotopes (δ13C) to infer the introduction of spilled oil into the planktonic food web. Surface ocean organic production and measured oil are separated by 5–7‰ in stable carbon isotope (δ13C) space, while in radiocarbon (Δ14C) space these two potential sources are separated by more than 1000‰. Thus radiocarbon isotopes provide a more sensitive tracer by which to infer possible introduction of Macondo oil into the food web. We measured Δ14C and δ13C in plankton collected from within 100 km of the spill site as well as in coastal and offshore DIC (dissolved inorganic carbon or ΣCO2) to constrain surface production values. On average, plankton values were depleted in 14C relative to surface DIC, and we found a significant linear correlation between Δ14C and δ13C in plankton. Cumulatively, these results are consistent with the hypothesis that carbon released from the Deepwater Horizon spill contributed to the offshore planktonic food web. Our results support the findings of Graham et al (2010 Environ. Res. Lett. 5 045301), but we infer that methane input may be important.

Experiment explores inter-calibration of biogeochemical flux and nucleic acid measurements

In the ocean, biologically active elements undergo continuous cycling between the biota, the water column, and the atmosphere. Biological processes and the resultant air/sea exchange of atmospherically active gases are closely modulated by the availability and distribution of key elements. Such processes have been traditionally measured by incubation of representative microbial communities and tracking of end-product appearance or substrate disappearance. The recent advent of molecular techniques allows for the quantification of DNA and the RNA messenger responsible for the synthesis of the enzymes catalyzing specific biochemical processes. However, there is little information on how levels of gene expression for natural populations of micro-organisms correlate with biogeochemical processes.

Phenanthrene Emulsification and Biodegradation Using Rhamnolipid Biosurfactants and Acinetobacter calcoaceticus In Vitro

ABSTRACT The ability of biosurfactants and Acinetobacter calcoaceticus to enhance the emulsification and biodegradation of phenanthrene was investigated. Phenanthrene is a polycyclic aromatic hydrocarbon that may be derived from various sources, for example incomplete combustion of petroleum fuel, and thus it occurs ubiquitously throughout the environment. In order to assess the efficacy of a biosurfactant microparticle system, emulsification assays and in vitro biodegradation studies were conducted. Emulsification assays were carried out to assess the stability of phenanthrene emulsions. Emulsion stability was determined by the height of the emulsion layer (Emulsification Index) and turbidity. In vitro biodegradation tests were done to estimate phenanthrene degradation from an aqueous system by A. calcoaceticus supplemented with encapsulated (ERhBS) and nonencapsulated biosurfactants (NERhBS). Results show that phenanthrene emulsifications were stabilized after 48 h with NERhBS and remained stable for 72 additional hours. Phenanthrene emulsifications were stabilized with ERhBS after 216 h and remained stable for an additional 96 h. A. calcoaceticus alone and supplemented with rhamnolipid biosurfactant were able to biodegrade 10 to 50 mg L−1 of phenanthrene within 250 h. When supplemented with NERhBS, A. calcoaceticus degraded phenanthrene significantly faster than when nonsupplemented or supplemented with ERhBS. Addition of exogenous biosurfactants was considered to be a major factor driving the direct correlation between decreasing phenanthrene concentration in the system and increasing bacterial biomass.