Jens Nieschulze

Web service based spatial forest information system using an open source software approach

For technical and other reasons there is a dilemma that data providers cannot find an appropriate way to redistribute spatial forest data and data users who need spatial data cannot access and integrate available forest resources information. To overcome this dilemma, this paper proposed a spatial forest information system based on Web service using an open source software approach. With Web service based architecture, the system can enable interoperability, integrate Web services from other application servers, reuse codes, and shorten the development time and cost. At the same time, it is possible to extend the local system to a regional or national spatial forest information system. The growth of Open Source Software (OSS) provides an alternative choice to proprietary software for operating systems, web servers, Web-based GIS applications and database management systems. Using open source software to develop spatial forest information systems can greatly reduce the cost while providing high performance and sharing spatial forest information. We chose open source software to build a prototype system for Xixia County, Henan Province, China. By integrating OSS packages Deegree and UMN MapServer which are compliant to the OGC open specifications, the prototype system enables users to access spatial forest information and travelling information of Xixia County which come from two different data servers via a standard Web browser and promotes spatial forest information sharing.

Diverse or uniform? — Intercomparison of two major German project databases for interdisciplinary collaborative functional biodiversity research

Research on biodiversity, its relation to ecosystem functioning and services, and the assessment of the impacts of environmental change on biodiversity needs an interdisciplinary perspective. This implies a great diversity of data and data formats gathered mostly in short- to mid-term collaborative research projects. It has been common practice that projects develop specific data management and communication solutions. We compare solutions of two major German collaborative research programs in functional biodiversity research to derive functional commonalities. This in-depth analysis follows five categories of the data life cycle: (i) data acquisition, (ii) metadata management, (iii) database, (iv) exploration, analysis and visualization, and (v) data curation and preservation. The results show that even though both systems were developed completely independently, they reveal comparable overall features and a similar state of implementation. Major focus areas lie in the implementation of comparable metadata schemas and their importance for storage and access strategies for tabular data on the value level. Basic analysis tools and similar management functions are considered. Intensive communication with the users and the orientation of ongoing developments based on user requirements is also important. Both systems are different mostly in specific details which, however, do not influence the overall comparable performance. It should be also emphasized that the same functionality is achieved with completely different software. The choice of software is based on the evaluation of available technologies. Thereby it might be influenced by individual experiences of the developers, but is mainly determined by the data diversity, which forces the usage of flexible technologies to develop adaptable systems. It is concluded that overall features for project databases of collaborative research projects must be supplemented by sophisticated data description, storage, and analysis structures to serve the requirements of integrative functional biodiversity research.

Data platforms in integrative biodiversity research

A special issue in the journal Ecological Informatics that focuses on data systems for integrative biodiversity research is planned for winter 2011 publication. The editors of the special issue encourage submission of papers reflecting a broad range of topics related to the design and implementation of data systems that can enable new and more highly integrative and synthetic biodiversity research. Such topics may include, but are not limited to, state-of-the-art integrative data platforms and repositories; data, data models, and standards; sustainability of infrastructure; tools, services, user requirements and incentives; and value-added features of existing data platforms. Authors are encouraged to include success stories and examples that illustrate how biodiversity and ecological research can and are being enabled by the infrastructure.

A flexible statistics web processing service - Added value for information systems for experiment data

Data management in the life sciences has evolved from simple storage of data to complex information systems providing additional functionalities like analysis and visualization capabilities, demanding the integration of statistical tools. In many cases the used statistical tools are hard-coded within the system. That leads to an expensive integration, substitution, or extension of tools because all changes have to be done in program code. Other systems are using generic solutions for tool integration but adapting them to another system is mostly rather extensive work. This paper shows a way to provide statistical functionality over a statistics web service, which can be easily integrated in any information system and set up using XML configuration files. The statistical functionality is extendable by simply adding the description of a new application to a configuration file. The service architecture as well as the data exchange process between client and service and the adding of analysis applications to the underlying service provider are described. Furthermore a practical example demonstrates the functionality of the service.