Jeong-Ju Kim

Identification of Quantitative Trait Loci Associated with Rice Eating Quality Traits Using a Population of Recombinant Inbred Lines Derived from a Cross between Two Temperate japonica Cultivars

Improved eating quality is a major breeding target in japonica rice due to market demand. In this study, we performed genetic analysis to identify quantitative trait loci (QTLs) that control rice eating quality traits using 192 recombinant inbred lines (RILs) derived from a cross between two japonica cultivars, ‘Suweon365’ and ‘Chucheongbyeo’. We evaluated the stickiness (ST) and overall evaluation (OE) of cooked rice using a sensory test, the glossiness of cooked rice (GCR) using a Toyo-taste meter, and measured the amylose content (AC), protein content (PC), alkali digestion value (ADV), and days to heading (DH) of the RILs in the years 2006 and 2007. Our analysis revealed 21 QTLs on chromosomes 1, 4, 6, 7, 8, and 11. QTLs on chromosomes 6, 7, and 8 were detected for three traits related to eating quality in both years. QTLs for ST and OE were identified by a sensory test in the same region of the QTLs for AC, PC, ADV, GCR and DH on chromosome 8. QTL effects on the GCR were verified using QTL-NILs (near-isogenic lines) of BC3F4–6 in the Suweon365 background, a low eating quality variety, and some BC1F3 lines. Chucheongbyeo alleles at QTLs on chromosomes 7 and 8 increased the GCR in the NILs and backcrossed lines. The QTLs identified by our analysis will be applicable to future marker-assisted selection (MAS) strategies for improving the eating quality of japonica rice.

Expression levels of three bacterial blight resistance genes against K3a race of Korea by molecular and phenotype analysis in japonica rice (O. sativa L.)

Bacterial blight, caused by Xanthomonas oryzae pv. oryzae (Xoo) is a destructive disease of rice in the major rice growing countries of Asia. In 2003, a serious bacterial blight epidemic occurred in the southwestern coastal areas in Korea, causing significant yield loss due to the emergence of a new race, K3a. IR24 near-isogenic lines containing Xa4, xa5, Xa7 and Xa21 genes conferred different degrees of resistance to the most virulent K3a isolate, HB01009 in an inoculation experiment in the greenhouse. Expression levels of the resistance genes, Xa4, xa5 and Xa21 were studied in two F2 populations derived from the crosses between elite japonica cultivars and an advanced backcross breeding line possessing Xa4, xa5 and Xa21 genes. F2 progenies segregated for K3a resistance (R) and susceptible (S) phenotypes in a ratio of 3(R):1(S) indicated that K3a resistance was controlled by a major dominant gene. Three PCR markers tightly linked to the resistance genes Xa4, xa5 and Xa21 confirmed the presence of the genes and their interaction with each gene. This study demonstrated that the Xa21 gene dominantly contributed to K3a resistance. However, the Xa4 gene also contributed to the full expression of resistance. The level of expression of strong resistance to K3a race was attributed to the presence of Xa21 and Xa4 genes irrespective of the presence of xa5 gene. Our results suggest that the R-gene combinations of Xa4+Xa21 could be a useful and effective strategy toward improving resistance to K3a race of Korean japonica cultivars.

QTL Detection Associated with Eating Quality Based on Palatability Test in Japonica Rice (Oryza sativa L.)

A recombinant inbred line (RIL) population derived from the cross between Ilpumbyeo (a Japonica of high eating quality) and Moroberekan (a tropical Japonica type of low eating quality) was used for mapping QTLs associated with grain physicochemical properties and eating quality traits in rice. A total of 182 recombinant inbred lines were evaluated for two physicochemical traits, alkali digestive value and amylose content, and five traits associated with eating quality including glossiness of cooked rice determined by Toyo-taste meter, and glossiness, stickiness, hardness and overall evaluation for taste evaluation by panels. A total of 30 QTLs associated with seven traits in 10 loci on chromosomes 1, 3, 5, 6, 10, and 12 were identified. The most critical regions for eating quality were on chromosomes 3, 5 and 6 by Ilpumbyeo alleles, whereas Moroberekan contributed a total of 6 loci on chromosomes 1, 10 and 12. The QTL region on chromosome 5 contains the novel alleles for eating quality from Ilpumbyeo. MAS using DNA markers tightly linked with those QTLs will be useful for breeding Japonica cultivars with high eating quality.

Multiple Disease Resistant Early Maturing Rice Cultivar 'Joil' with High Grain Quality Adaptable to Early Transplanting Cultivation in the Southern Plain Area

Joil’ is a multiple disease resistant early maturing rice cultivar with high grain quality. ‘Joil’ was derived from a single cross between ‘Unbong37’ (cultivar name ‘Unmi’) and ‘HR23156-26-2-3-5’. ‘Unmi’ is an early maturing rice cultivar with high grain quality and resistance to rice blast and stripe virus. ‘HR23156-26-2-3-5’ is an early maturing elite rice line with lodging resistance and cold tolerance. ‘Joil’ was selected through the pedigree method, yield trials, and local adaptability tests. ‘Joil’ was an early maturing rice. The heading date of ‘Joil’ was July 16 in early transplanting cultivation, which was 2 days later than that of ‘Jopyeong’. ‘Joil’ was a lodging resistance rice with a short culm and showed better tolerance to viviparous germination than that of ‘Jopyeong’. ‘Joil’ was a multiple disease resistant rice with resistance against rice blast, bacterial blight, and stripe virus. ‘Joil’ showed higher yield in both early and late-transplanting cultivations than those of the standard rice cultivars ‘Jopyeong’ and ‘Geumo’. ‘Joil’ had enhanced grain quality under high temperature ripening conditions in early transplanting cultivation. The cooked rice had good grain appearance and taste attributes, and this cultivar had a higher head rice ratio than that of ‘Jopyeong’. ‘Joil’, a multiple disease resistant early maturing rice cultivar with high grain quality, would be suitable for early transplanting cultivation in the southern plain area (Registration No. 6792).

Yield Potentials of Rice and Soybean As Affected by Cropping Systems in Mid-mountainous Paddy Soils of Korea

Received: July 31, 2017 Revised: August 28, 2017 Accepted: August 30, 2017 To get some informations for sustainable paddy use, the productivities of soils with two years of cropping systems were estimated through pot experiment using two pretreated groups of not autoclaved ‘natural’and ‘autoclaved’-soils without any fertilization. And then the relationship between the productivities, called yield potentials, and the characteristics of soils as affected by cropping systems, such as rice-rice (R-R), ricebarley-rice-barley (R-B-R-B), rice-barley-rice-wheat (R-B-R-W), soybean-barley-soybean-barley (S-B-S-B), of which barley and wheat were composted at a level of 10 MT ha-1, and S-B-S-B without compost, was analyzed. These treatments were established in mid-mountainous loam paddy, which contained exchangeable Ca of 11.8 cmolc kg -1, located at the altitude of 285 m above sea level in Sangju of Korea. Crops for the estimation of soil productivity were rice cv. ‘Seolemi’ and soybean cv. ‘Chamol’. As a result, under the natural soils condition, rice grain and straw were highly produced in composted S-B-S-B soils (p < 0.05) and lowly in R-R soils (p < 0.05). While soybean grain and stem were higher in R-R soils (p < 0.05) than other soils which not significantly different each other. In case of autoclaved soils, the yield potentials of rice and soybean were high together in either composted R-B-R-B/W or S-B-S-B soils compared to R-R and uncomposted S-B-S-B soils (p < 0.05). In especial, these yield potentials under the natural soils condition were commonly influenced by soil porosity showing negative correlation for rice (p < 0.01); positive for soybean (p < 0.05). And the porosity possibly reversed even the symbiotic contribution of indigenous Bradyrhizobium japonicum for soybean. Under autoclaved soils condition the potentials of rice and soybean showed negative correlations with soil C:N ratio (p < 0.05) similarly to the case of rice in the natural soils.

Bacterial Blight Resistant Mid-late Maturing Rice ‘Manbaek’ with High Grain Quality

‘Manbaek’ is a bacterial blight resistant mid-late maturing rice cultivar with high grain quality. ‘Manbeak’ was derived from anther culture using the backcross combination, Hopum*2/SR30075. ‘Hopum’ is a mid-late maturing rice cultivar with high grain quality and ‘SR30075’ is a pyramid line carrying three bacterial blight resistance genes. ‘Manbaek’ was selected through the pedigree method, yield trials, and local adaptability tests. ‘Manbeak’ carrying two bacterial blight resistance gene Xa3 and xa5 showed high-level and broad-spectrum resistance against bacterial blight. ‘Manbaek’ was resistant to K3a, mostly virulent race in Korea, and exhibited resistance reaction against 16 Korean bacterial blight isolates. ‘Manbaek’ was a mid-late maturing rice. The heading date of ‘Manbaek’ was August 19th, which was 5 days later than that of ‘Nampyeong’. Manbaek’ was a lodging-tolerant rice with short culm and dark green leaf. Due to the low viviparous germination, ‘Manbaek’ could be a useful material to prevent pre-harvest sprouting. ‘Mabeak’ was resistant to bacterial blight and rice stripe virus, but susceptible to other virus diseases and insect pests. The yield of ‘Manbaek’ was similar to ‘Nampyeong’. ‘Manbaek’ showed excellent grain appearance and good tastes of cooked rice, so that it could contribute to improving the quality of bacterial blight resistant cultivars. ‘Manbaek’, bacterial blight resistant cultivar with high grain quality, is suitable for the cultivation at bacterial blight prone area and has been utilized in the breeding programs for enhancing the resistance against bacterial blight (Registration No. 6069).

Development of japonica Rice Lines with Four Bacterial Blight Resistance Genes using Phenotypic and Marker-assisted Selection

Four bacterial blight resistance genes, Xa1+Xa3+xa5+Xa21, pyramid elite japonica rice lines were developed for enhancing the resistance of rice against Xanthomonas oryzae pv. oryzae in Korea. Seven doubled haploid (RDL1-7) and ten F6 lines (RPL1-10) having Xa1+Xa3+xa5+Xa21 which were derived from the cross between Ilmi, high grain quality japonica rice cultivar carrying Xa1, and Iksan575, elite line carrying Xa3+xa5+Xa21, were developed using marker-assisted selection for resistance genes and phenotypic selection for bacterial blight resistance and agronomic traits. Among resistance genes combinations in F2 population, four resistance genes combination, Xa1+Xa3+xa5+Xa21, showed the highest resistance and conferred the enhanced resistance than three genes combination, Xa3+xa5+Xa21. Four genes pyramid lines (RDL and RPL) showed broad-spectrum resistant against 16 Korean bacterial blight isolates and the yield and quality of the lines did not alter by the inoculation of K3a, the most virulent race in Korea. In addition, these lines had excellent plant type and exhibited more enhanced yield than previously developed resistant cultivars. Four bacterial blight resistance genes combination, Xa1+Xa3+xa5+Xa21, was efficient and promising combination and developed lines with four genes could be useful materials and will be applied to the breeding programs for enhancing the resistance of japonica rice against bacterial blight.

Lodging and Pre-harvest Sprouting Tolerant, High Quality and Suitable for Processing Cooked Rice ‘Jungmo1017’

The ‘Jungmo1017’ is a japonica rice variety developed from a cross between Suweon462 which has a good plant architecture, cold tolerance, moderately tolerant to leaf blast and bacterial blight and medium maturing habit, and Yeongdeog34 which has translucent milled rice and good milling properties, by the rice breeding team at NICS, RDA in 2011. The heading date of ‘Jungmo1017’ is August 16 and it is six days later than ‘Hwaseong’. ‘Jungmo1017’ has 65 cm of culm length which is 18 cm shorter than those of ‘Hwaseong’ and 93 spikelet per panicle. The pre-harvest sprouting rate of ‘Jungmo1017’ is 8.6% that is lower than 27.7% of ‘Hwaseong’ on local adaptability test (LAT). It showed resistance to blast diseases and moderately resistant to bacterial blight (K1 race) and stripe virus, but susceptible to other races (K2, K3 and K3a) of bacterial blight, viruses and planthoppers. The milled rice of this variety exhibits translucent, clear non-glutinous endosperm and medium short grain shape. It has better palatability index of cooked rice (0.53) than that of ‘Hwaseong’. ‘Jungmo1017’ showed lower protein content (6.4%) and amylose content (18.0%). ‘Jungmo1017’ could use aseptic-packaged cooked rice or processing cooked rice because its hardness of cooked rice is soft, setback and balance is low and palatability of cold and aseptic rice showed high score. The characters related to milling is better than those of ‘Hwaseong’. ‘Jungmo1017’ showed 5.01 MT/ha of milled rice productivity at 7 sites of middle plain, southern mid-mountainous and south-east coastal area in ordinary cultivation. ‘Jungmo1017’ could be adaptable to the middle plain area in Korea.