Jeremy E. Dahl

The molecular fossil record of oleanane and its relation to angiosperms.

Oleanane has been reported in Upper Cretaceous and Tertiary source rocks and their related oils and has been suggested as a marker for flowering plants. Correspondence of oleanane concentrations relative to the ubiquitous microbial marker 17α-hopane with angiosperm diversification (Neocomian to Miocene) suggests that oleanane concentrations in migrated petroleum can be used to identify the maximum age of unknown or unavailable source rock. Rare occurrences of pre-Cretaceous oleanane suggest either that a separate lineage leads to the angiosperms well before the Early Cretaceous or that other plant groups have the rarely expressed ability to synthesize oleanane precursors.

Diamondoid hydrocarbons as indicators of natural oil cracking

Oil cracking—the thermal breakdown of heavy hydrocarbons to smaller ones—takes place within oil-bearing rock formations at depths commonly accessed by commercial oil wells. The process ultimately converts oil into gas and pyrobitumen, and thus limits the occurrence of petroleum and the success of exploration. Thermal cracking of liquid petroleum increases with depth until it reaches completion at the so-called ‘oil deadline’, which is generally placed, at around 5 km depth and at temperatures of 150–175 °C. However, cracking experiments and the discovery of relatively ‘hot’ oil reservoirs, imply that petroleum is thermally more stable than previously assumed; in fact it has been suggested that liquid petroleum might persist at temperatures reaching, or even exceeding, 200 °C. But reliable estimates of the extent of oil cracking and the depth at which it occurs in any given reservoir are difficult to obtain. Here we demonstrate that the relative abundance of diamondoids, a class of petroleum compounds whose unique thermal stability leads to their progressive concentration during cracking, can be used to identify the occurrence and estimate the extent of oil destruction and the oil deadline in a particular basin. We are also able to identify oils consisting of mixtures of high- and low-maturity components, demonstrating that our method yields valuable information on the cracking and mixing processes affecting petroleum systems.

Monochromatic electron photoemission from diamondoid monolayers.

We found monochromatic electron photoemission from large-area self-assembled monolayers of a functionalized diamondoid, [121]tetramantane-6-thiol. Photoelectron spectra of the diamondoid monolayers exhibited a peak at the low–kinetic energy threshold; up to 68% of all emitted electrons were emitted within this single energy peak. The intensity of the emission peak is indicative of diamondoids being negative electron affinity materials. With an energy distribution width of less than 0.5 electron volts, this source of monochromatic electrons may find application in technologies such as electron microscopy, electron beam lithography, and field-emission flat-panel displays.

Stable Alkanes Containing Very Long Carbon–Carbon Bonds

The metal-induced coupling of tertiary diamondoid bromides gave highly sterically congested hydrocarbon (hetero)dimers with exceptionally long central C-C bonds of up to 1.71 Å in 2-(1-diamantyl)[121]tetramantane. Yet, these dimers are thermally very stable even at temperatures above 200 °C, which is not in line with common C-C bond length versus bond strengths correlations. We suggest that the extraordinary stabilization arises from numerous intramolecular van der Waals attractions between the neighboring H-terminated diamond-like surfaces. The C-C bond rotational dynamics of 1-(1-adamantyl)diamantane, 1-(1-diamantyl)diamantane, 2-(1-adamantyl)triamantane, 2-(1-diamantyl)triamantane, and 2-(1-diamantyl)[121]tetramantane were studied through variable-temperature (1)H- and (13)C NMR spectroscopies. The shapes of the inward (endo) CH surfaces determine the dynamic behavior, changing the central C-C bond rotation barriers from 7 to 33 kcal mol(-1). We probe the ability of popular density functional theory (DFT) approaches (including BLYP, B3LYP, B98, B3LYP-Dn, B97D, B3PW91, BHandHLYP, B3P86, PBE1PBE, wB97XD, and M06-2X) with 6-31G(d,p) and cc-pVDZ basis sets to describe such an unusual bonding situation. Only functionals accounting for dispersion are able to reproduce the experimental geometries, while most DFT functionals are able to reproduce the experimental rotational barriers due to error cancellations. Computations on larger diamondoids reveal that the interplay between the shapes and the sizes of the CH surfaces may even allow the preparation of open-shell alkyl radical dimers (and possibly polymers) that are strongly held together exclusively by dispersion forces.

Spatially resolved electronic and vibronic properties of single diamondoid molecules

Diamondoids are a unique form of carbon nanostructure best described as hydrogen-terminated diamond molecules. Their diamond-cage structures and tetrahedral sp3 hybrid bonding create new possibilities for tuning electronic bandgaps, optical properties, thermal transport and mechanical strength at the nanoscale. The recently discovered higher diamondoids have thus generated much excitement in regards to their potential versatility as nanoscale devices. Despite this excitement, however, very little is known about the properties of isolated diamondoids on metal surfaces, a very relevant system for molecular electronics. For example, it is unclear how the microscopic characteristics of molecular orbitals and local electron-vibrational coupling affect electron conduction, emission and energy transfer in the diamondoids. Here, we report the first single-molecule study of tetramantane diamondoids on Au(111) using scanning tunnelling microscopy and spectroscopy. We find that the diamondoid electronic structure and electron-vibrational coupling exhibit unique and unexpected spatial correlations characterized by pronounced nodal structure across the molecular surfaces. Ab initio pseudopotential density functional calculations reveal that much of the observed electronic and vibronic properties of diamondoids are determined by surface hydrogen terminations, a feature having important implications for designing future diamondoid-based molecular devices.

Origin of the monochromatic photoemission peak in diamondoid monolayers.

Recent photoemission experiments have discovered a highly monochromatized secondary electron peak emitted from diamondoid self-assembled monolayers on metal substrates. New experimental data and simulation results are presented to show that a combination of negative electron affinity and strong electron-phonon scattering is responsible for this behavior. The simulation results are generated using a simple Monte Carlo transport algorithm. The simulated spectra recreate the main spectral features of the measured ones.

Infrared Spectroscopy of Diamondoid Molecules: New Insights into the Presence of Nanodiamonds in the Interstellar Medium

Although they are relatively different in band shape, infrared features around 3.4-3.5 μm in the emission spectra of HD 97048 and Elias 1 and in the absorption spectra of various dense clouds have both been attributed to diamondoid molecules/particles. This assignment is based mainly on infrared spectra of hydrogenated diamond thin films and of diamond nanocrystals of known average size. Here we present an analysis of the astrophysical implications of recently reported solid-state 2.5-12.5 μm spectra of individual diamondoid molecules, up to the size of hexamantane (C26H30). These spectra provide the first experimental measurements of the infrared frequencies of this class of molecules. In addition, laboratory gas-phase infrared emission spectra of the three smallest members of the diamondoid family are reported, as well as theoretical spectra for some larger species. The present data set allows us to relate spectral signatures to the molecular size and structure. The spectra of tetrahedral diamondoids are found to be qualitatively different from those of lower symmetry species, which possibly explains the differences between the astrophysical emission and absorption spectra. Interestingly, the 3.53 μm band is clearly observed in the spectra of these small molecular diamondoids, whereas previous studies on nanodiamond particles found this band only for species larger than ≈50 nm. Our results support the assignment of the 3.43 and 3.53 μm emission features in HD 97048 and Elias 1 to diamondoids of a few nanometers in size as well as the suggestion that smaller diamondoid molecules contribute to the 3.47 μm interstellar absorption band.

Experimental determination of the ionization potentials of the first five members of the nanodiamond series

The ionization potentials of size- and isomer-selected diamondoids (nanodiamond containing one to five crystal cages) have been measured by means of total-ion-yield spectroscopy. We find a monotonic decrease of the ionization potential with increasing diamondoid size. This experimental result is compared to recent theoretical predictions and comparable investigations on related carbon clusters, the fullerenes, which show isomer effects to be stronger than size dependence.

Near-Edge X-ray Absorption Fine Structure Spectroscopy of Diamondoid Thiol Monolayers on Gold

Diamondoids, hydrocarbon molecules with cubic-diamond-cage structures, have unique properties with potential value for nanotechnology. The availability and ability to selectively functionalize this special class of nanodiamond materials opens new possibilities for surface modification, for high-efficiency field emitters in molecular electronics, as seed crystals for diamond growth, or as robust mechanical coatings. The properties of self-assembled monolayers (SAMs) of diamondoids are thus of fundamental interest for a variety of emerging applications. This paper presents the effects of thiol substitution position and polymantane order on diamondoid SAMs on gold using near-edge X-ray absorption fine structure spectroscopy (NEXAFS) and X-ray photoelectron spectroscopy (XPS). A framework to determine both molecular tilt and twist through NEXAFS is presented and reveals highly ordered diamondoid SAMs, with the molecular orientation controlled by the thiol location. C 1s and S 2p binding energies are lower in adamantane thiol than alkane thiols on gold by 0.67 +/- 0.05 and 0.16 +/- 0.04 eV, respectively. These binding energies vary with diamondoid monolayer structure and thiol substitution position, consistent with different degrees of steric strain and electronic interaction with the substrate. This work demonstrates control over the assembly, in particular the orientational and electronic structure, providing a flexible design of surface properties with this exciting new class of diamond nanoparticles.

Oxygen-Doped Nanodiamonds: Synthesis and Functionalizations†

Oxadiamondoids representing a new class of carbon nanoparticles were prepared from the respective diamondoid ketones via an effective two-step procedure involving addition of methyl magnesium iodide and oxidation with trifluoroperacetic acid in trifluoroacetic acid. The reactivities of the oxacages are determined by the position of the dopant and are in good agreement with computational predictions.