Jérôme Sueur

Seewave: a free modular tool for sound analysis and synthesis.

ABSTRACT We review Seewave, new software for analysing and synthesizing sounds. Seewave is free and works on a wide variety of operating systems as an extension of the R operating environment. Its current 67 functions allow the user to achieve time, amplitude and frequency analyses, to estimate quantitative differences between sounds, and to generate new sounds for playback experiments. Thanks to its implementation in the R environment, Seewave is fully modular. All functions can be combined for complex data acquisition and graphical output, they can be part of important scripts for batch processing and they can be modified ad libitum. New functions can also be written, making Seewave a truly open-source tool.

Rapid Acoustic Survey for Biodiversity Appraisal

Biodiversity assessment remains one of the most difficult challenges encountered by ecologists and conservation biologists. This task is becoming even more urgent with the current increase of habitat loss. Many methods–from rapid biodiversity assessments (RBA) to all-taxa biodiversity inventories (ATBI)–have been developed for decades to estimate local species richness. However, these methods are costly and invasive. Several animals–birds, mammals, amphibians, fishes and arthropods–produce sounds when moving, communicating or sensing their environment. Here we propose a new concept and method to describe biodiversity. We suggest to forego species or morphospecies identification used by ATBI and RBA respectively but rather to tackle the problem at another evolutionary unit, the community level. We also propose that a part of diversity can be estimated and compared through a rapid acoustic analysis of the sound produced by animal communities. We produced α and β diversity indexes that we first tested with 540 simulated acoustic communities. The α index, which measures acoustic entropy, shows a logarithmic correlation with the number of species within the acoustic community. The β index, which estimates both temporal and spectral dissimilarities, is linearly linked to the number of unshared species between acoustic communities. We then applied both indexes to two closely spaced Tanzanian dry lowland coastal forests. Indexes reveal for this small sample a lower acoustic diversity for the most disturbed forest and acoustic dissimilarities between the two forests suggest that degradation could have significantly decreased and modified community composition. Our results demonstrate for the first time that an indicator of biological diversity can be reliably obtained in a non-invasive way and with a limited sampling effort. This new approach may facilitate the appraisal of animal diversity at large spatial and temporal scales.

Acoustic Indices for Biodiversity Assessment and Landscape Investigation

Jérôme Sueur1), Almo Farina2), Amandine Gasc1,3), Nadia Pieretti2), Sandrine Pavoine3,4) 1) Muséum national d’Histoire naturelle, Département Systématique et Évolution, UMR 7205-CNRS ISYEB, 45 rue Buffon, Paris, France. sueur@mnhn.fr 2) Department of Basic Sciences and Foundations, Urbino University, Urbino, Italy 3) Muséum national d’Histoire naturelle, Département Ecologie et Gestion de la Biodiversité, UMR 7204 CNRS-UPMC CESCO, 55-61 rue Buffon, 75005 Paris, France 4) Mathematical Ecology Research Group, Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK

Ecoacoustics: the Ecological Investigation and Interpretation of Environmental Sound

The sounds produced by animals have been a topic of research into animal behaviour for a very long time. If acoustic signals are undoubtedly a vehicle for exchanging information between individuals, environmental sounds embed as well a significant level of data related to the ecology of populations, communities and landscapes. The consideration of environmental sounds for ecological investigations opens up a field of research that we define with the term ecoacoustics. In this paper, we draw the contours of ecoacoustics by detailing: the main theories, concepts and methods used in ecoacoustic research, and the numerous outcomes that can be expected from the ecological approach to sound. Ecoacoustics has several theoretical and practical challenges, but we firmly believe that this new approach to investigating ecological processes will generate abundant and exciting research programs.

Biodiversity Sampling Using a Global Acoustic Approach: Contrasting Sites with Microendemics in New Caledonia

New Caledonia is a Pacific island with a unique biodiversity showing an extreme microendemism. Many species distributions observed on this island are extremely restricted, localized to mountains or rivers making biodiversity evaluation and conservation a difficult task. A rapid biodiversity assessment method based on acoustics was recently proposed. This method could help to document the unique spatial structure observed in New Caledonia. Here, this method was applied in an attempt to reveal differences among three mountain sites (Mandjélia, Koghis and Aoupinié) with similar ecological features and species richness level, but with high beta diversity according to different microendemic assemblages. In each site, several local acoustic communities were sampled with audio recorders. An automatic acoustic sampling was run on these three sites for a period of 82 successive days. Acoustic properties of animal communities were analysed without any species identification. A frequency spectral complexity index (NP) was used as an estimate of the level of acoustic activity and a frequency spectral dissimilarity index (Df) assessed acoustic differences between pairs of recordings. As expected, the index NP did not reveal significant differences in the acoustic activity level between the three sites. However, the acoustic variability estimated by the index Df, could first be explained by changes in the acoustic communities along the 24-hour cycle and second by acoustic dissimilarities between the three sites. The results support the hypothesis that global acoustic analyses can detect acoustic differences between sites with similar species richness and similar ecological context, but with different species assemblages. This study also demonstrates that global acoustic methods applied at broad spatial and temporal scales could help to assess local biodiversity in the challenging context of microendemism. The method could be deployed over large areas, and could help to compare different sites and determine conservation priorities.

Spatial heterogeneity of ambient sound at the habitat type level: ecological implications and applications

While spatial heterogeneity is one the most studied ecological concepts, few or no studies have dealt with the subject of ambient sound heterogeneity from an ecological perspective. Similarly to ambient light conditions, which have been shown to play a significant role in ecological speciation, we investigated the existence of ambient sound heterogeneity and its possible relation to habitat structure and specifically to habitat types (as syntaxonomically defined ecological units). Considering that the structure and composition of animal communities are habitat type specific and that acoustic signals produced by animals may be shaped by the habitat’s vegetation structure, natural soundscapes are likely to be habitat specific. We recorded ambient sound in four forest and two grassland habitat types in Northern Greece. Using digital signal techniques and machine learning algorithms (self organizing maps, random forests), we concluded that ambient sound is not only spatially heterogeneous, but is also directly related to habitat type structure, pointing towards the existence of habitat type specific acoustic signatures. We provide evidence of the importance of soundscape heterogeneity and ambient sound signatures and a possible solution to the social cues versus vegetation characteristics debate in habitat selection theory.

Temporal and spatial variability of animal sound within a neotropical forest

article i nfo Soundscape ecology aims to use biological, geophysical and anthropogenic sound to understand natural-human landscape dynamics. The analysis of natural soundscapes with no human noise is a prerequisite to understand and quantify the effects of human activity on animal ecology linked to sound. Preserved tropical forests are the lo- cation of unique, highly diverse, and animal sound. However, although the acoustic behavior of several tropical spe- cies has been examined, very few analyses have attempted tropical sounds at a spatial scale able to incorporate landscape characters. Here we analyze the acoustic structure of a neotropical forest landscape in French Guiana. We used a four dimensional synchronous acoustic sampling (three spatial dimensions and the temporal dimen- sion) by deploying an array of 24 microphones in the understory and canopy of the Nouragues Nature Reserve dur- ing a 43 day period and we undertook a detailed signal analysis to detect spatial and temporal animal acoustic heterogeneity. We identified a clear pattern of acoustic activity with four distinct periods of activity that differed by their spectral characteristics indicating acoustic heterogeneity along the 24-hour cycle but periodicity at a longer time scale. We revealed acoustic divergences between the understory and the canopy layers in terms of amplitude level and frequency content. We highlighted vertical (understory/canopy) and horizontal acoustic heterogeneities with a more diverse (frequency) patch in the north of the study area sampled and a more active (intensity) patch in the southeast of the study area. Our results show that the soundscape of a tropical forest, in the absence of human disturbance, is subtly structured in time and is heterogeneous in space. This structure is probably linked to endogenous factors that rule out the acoustic time activity of animal species, to the vertical stratification of singing communities or guilds, to horizontal variations in the distributions of species and to veg- etation spatial heterogeneity. Our study emphasizes that tropical soundscapes need to be recorded and analyzed in considerable spatial and temporal detail to understand their dynamics without the presence of human pro- duced noise. Our analysis also suggests that tropical forests are unique places for acoustic diversity, supporting the need for preservation from all perturbations including anthropic noise.

Dispersive and non-dispersive waves through plants: implications for arthropod vibratory communication

Vibratory communication in arthropods is a widespread phenomenon. Arthropods living on plants have been reported to use only dispersive bending waves in the context of prey–predator, competition, social and sexual interactions. Differences in signal structure have also been postulated to work as species recognition mechanisms and speciation agents. Using two identical laser Doppler vibrometers and a wavelet analysis, we quantified the wave propagation modes in rush stems (Juncus effusus) over the whole range of frequencies used by arthropods. A non-dimensionalized analysis shows that mechanical waves propagate not only as dispersive bending waves, but also as non-dispersive waves. Our analysis implies that an arthropod can communicate through non-dispersive bending waves by either producing signals of high frequencies or by choosing large stems, two widely different options tapping into the physiological and the behavioural repertoires, respectively. Non-dispersive waves, unreported so far in insect vibratory communication in plants, present serious advantages over dispersive bending waves in terms of signal integrity and may well be much more widely used than anticipated, in particular for species recognition.

Sound radiation around a flying fly

Many insects produce sounds during flight. These acoustic emissions result from the oscillation of the wings in air. To date, most studies have measured the frequency characteristics of flight sounds, leaving other acoustic characteristics--and their possible biological functions--unexplored. Here, using close-range acoustic recording, we describe both the directional radiation pattern and the detailed frequency composition of the sound produced by a tethered flying (Lucilia sericata). The flapping wings produce a sound wave consisting of a series of harmonics, the first harmonic occurring around 190 Hz. In the horizontal plane of the fly, the first harmonic shows a dipolelike amplitude distribution whereas the second harmonic shows a monopolelike radiation pattern. The first frequency component is dominant in front of the fly while the second harmonic is dominant at the sides. Sound with a broad frequency content, typical of that produced by wind, is also recorded at the back of the fly. This sound qualifies as pseudo-sound and results from the vortices generated during wing kinematics. Frequency and amplitude features may be used by flies in different behavioral contexts such as sexual communication, competitive communication, or navigation within the environment.

Tuning the drum: the mechanical basis for frequency discrimination in a Mediterranean cicada

SUMMARY Cicadas are known to use sound to find a mate. While the mechanism employed by male cicadas to generate loud calling songs has been described in detail, little information exists to explain how their ears work. Using microscanning laser Doppler vibrometry, the tympanal vibrations in the cicada Cicadatra atra are measured in response to acoustic playbacks. The topographically accurate optical measurements reveal the vibrational behaviour of the anatomically complex tympanal membrane. Notably, the tympanal ridge, a distinct structural element of the tympanum that is a link to the receptor cells, undergoes mechanical vibrations reminiscent of a travelling wave. In effect, the frequency for which the maximum deflection amplitude is observed regularly decreases from the apex to the base of the ridge. It is also shown that whilst female ears are mechanically tuned to the males song, the males tympanum is only partially tuned to its own song. This study establishes the presence of a peripheral auditory mechanism that can potentially process auditory frequency analysis. In view of the importance of acoustic signalling in cicadas, this unconventional tympanal mechanism may be employed in the context of species recognition and sexual selection.