Jesse R. Fischer

Assemblage and Population-Level Responses of Stream Fish to Riparian Buffers at Multiple Spatial Scales

Abstract Riparian buffers can improve stream water and habitat quality by reducing non-point-source pollution (e.g., nutrients and sediment), increasing canopy cover and thereby reducing water temperature, and contributing allochthonous organic matter (e.g., leaf litter and woody debris). However, the influence of riparian buffers on biotic assemblages in streams is poorly understood, particularly in the Midwestern United States. In this study, we evaluated the effects of riparian buffers on instream habitat, fish assemblage structure, and population characteristics (i.e., the growth of two small-bodied species) in three streams in central Iowa. The streams were surveyed at two spatial scales; specifically, 41 reaches were sampled and 247 macrohabitat types (i.e., pool, riffle, and run) were subsampled in the summer of 2007. Fish assemblage structure data were summarized into separate data sets by the relative abundance of individual species (i.e., fish per minute of electrofishing) and guilds (e.g., trop...

Effects of sampling effort, assemblage similarity, and habitat heterogeneity on estimates of species richness and relative abundance of stream fishes

We estimated the sampling effort required to accurately estimate species richness and to detect changes in catch-per-unit-effort (CPUE) in four Great Plains, USA, streams. The number of sampled reaches (i.e., 1% of total catch) with b = 0.80 ranged from 7 to 630 (mean = 99) and de- creased with longer sampled reaches. A greater number of sampled reaches were needed to detect 90% of species richness and 25% changes in CPUE when Jaccards similarity of samples of stream fish assemblages and habitat heterogeneity was lower within streams. Our results suggest that homogeneous stream segments require more sampled reaches to characterize fish assemblages and monitor trends in fish abundance.

Influences of native and non-native benthivorous fishes on aquatic ecosystem degradation

Invasive common carp Cyprinus carpio has long been identified as a contributor to water quality deterioration, disrupted ecosystem processes, and shifts in biological assemblage structure. In contrast, little information is available regarding the effects of native benthivorous species on aquatic systems despite their functional similarity to common carp. Effects of common carp and the native black bullhead Ameiurus melas on sediment resuspension, nutrient concentrations, macrophytes, and assemblage structure of zooplankton and macroinvertebrates, were experimentally evaluated. We observed decreased water clarity, increased nutrient concentrations, decreased macrophyte biomass, and decreased benthic macroinvertebrate abundance and biomass associated with common carp, regardless of the presence of black bullhead. In contrast, black bullhead increased total phosphorus, and chlorophyll a concentrations and copepod abundance, but had little or no effect on other measured water quality and biological variables when compared to control conditions. Overall, experimental results suggest that although black bullhead tend to be tolerant of degraded ecosystems, they are not a source of physical changes to the environment known to be responsible for perpetuating degraded water quality (e.g., stable state shifts). Therefore, increased abundance of native species, such as black bullhead, following the invasion of common carp, may serve as an indicator of ecological conditions and should not to be assumed as causative.

Historical and current environmental influences on an endemic great plains fish

ABSTRACT Native fishes of the Great Plains are at risk of decline due to disturbances to physical habitat caused by changes in land and water use, as well as shifts in species assemblages driven by the invasion of introduced species with the loss of natives. We used historical and current fish assemblage data in conjunction with current habitat information to assess these influences on an endemic Great Plains stream fish, the plains topminnow (Fundulus sciadicus). Of the 31 sites where the plains topminnow occurred historically (1939–1940), it was found in only seven of those sites in 2003–2005. Our results demonstrate a shift in fish assemblage over time that coincides with the loss of plains topminnow. Changes in fish assemblages were characterized by increases in occurrence of exotic, invasive and generalist species with declines in occurrences of native fishes. An information theoretic approach was used to evaluate candidate models of current fish assemblage and physical/chemical habitat on the presence of the plains topminnow. Candidate models that included both instream habitat (e.g., vegetation coverage, undercut banks) and the native fish species assemblage are important to predicting presence of the plains topminnow within its historic range. Conservation of Great Plains fishes including the plains topminnow will need a combination of habitat protection and enhancement.

Development and evaluation of a boat-mounted RFID antenna for monitoring freshwater mussels

Abstract.  Development of radio frequency identification (RFID) technology and passive integrated transponder (PIT) tags has substantially increased the ability of researchers and managers to monitor populations of aquatic organisms. However, use of transportable RFID antenna systems (i.e., backpack-mounted) is currently limited to wadeable aquatic environments (<1.4 m water depth). We describe the design, construction, and evaluation of a boat-mounted RFID antenna to detect individually PIT-tagged benthic aquatic organisms (mussels). We evaluated the effects of tag orientation on detection distances in water with a 32-mm half-duplex PIT tag. Detection distances up to 50 cm from the antenna coils were obtained, but detection distance was dependent on tag orientation. We also evaluated detection distance of PIT tags beneath the sediment to simulate detection of burrowing mussels with 23- and 32-mm tags. In sand substrate, the maximum detection distance varied from 3.5 cm and 4.5 cm (vertical tag orientation) to 24.7 cm and 39.4 cm (45° tag orientation) for the 23- and 32-mm PIT tags, respectively. Our results suggest a 1.4-m total detection width for tagged mussels on the substrate surface by the boat-mounted antenna system regardless of tag orientation. However, burrowed mussels may require multiple passes to increase detection that would be influenced by depth, tag orientation, and tag size. Construction of the boat-mounted antenna was relatively low in cost (<500 USD) and had several advantages (less labor and time intensive, increased safety) over traditional mussel sampling techniques (diving, snorkeling) in nonwadeable habitats.

Historical changes in Nebraska's lotic fish assemblages: Implications of anthropogenic alterations

Abstract The plains of midwestern North America have undergone significant anthropogenic alterations following European settlement with consequent effects to lotic fish assemblage structure. We examined trends in fish assemblage structure and function in Nebraskas lotic systems using site-specific, presence-absence data from historical (1939–1940) and contemporary surveys (2003–2005; n  =  183). Shifts in fish assemblage structure were characterized by declines of specialist species (e.g., western silvery minnow Hybognathus argyritis) and increases in nonnative, sport, and generalist species (e.g., common carp Cyprinus carpio). Our research illustrates differences between historical and contemporary surveys for both taxonomic and functional metrics. Changes in fish assemblage structure were correlated with a contemporary measure of anthropogenic alteration (Human Threat Index; HTI) and were most pronounced for large-scale threats (i.e., watershed HTI, overall HTI). The HTI is a composite index of cumulative anthropogenic alterations experienced by a stream system and was used to investigate broad-scale implications of anthropogenic activity on fish assemblage structure. Fish assemblages among sites were more similar in contemporary surveys than in historical surveys, such changes might indicate a homogenization of the fish assemblages. Losses of native species and increases in introduced species have occurred in Nebraskas lotic systems across a broad temporal span and shifts are likely related to high levels of human perturbation.

Recruitment phenology and pelagic larval duration in Caribbean amphidromous fishes

Amphidromous fishes are major components of oceanic tropical island stream ecosystems, such as those of the Caribbean island, Puerto Rico. Fishes with this life history face threats related to the requirement for connectivity between freshwater and marine environments during early life stages. Pelagic larval duration and recruitment phenology are 2 early life-history processes that are crucial for the biology, ecology, conservation, and management of amphidromous fishes. However, these processes are understudied in the Caribbean in general and have never been quantified in Puerto Rico. We quantified recruit abundance, recruitment phenology, and pelagic larval duration of several Caribbean amphidromous fish species in multiple rivers in Puerto Rico and explored the effects of environmental variables on recruit abundances. Two fish taxa—sirajo goby (Sicydium spp.) and River Goby (Awaous banana)—were exceptionally abundant as postlarvae and recruited to Caribbean rivers in pulsed migration episodes that were periodic at annual and lunar scales. Sirajo goby and River Goby recruit abundances varied among rivers, were greater at sunrise than at sunset, and were positively related to river discharge. The pelagic larval duration of 4 fish taxa ranged from a minimum of 28 d to a maximum of 103 d with means between 43 ± 7 d (SD) and 65 ± 11 d. We identified the last-quarter moon phase during the months of June through January as periods of maximum amphidromous fish recruitment to freshwater streams. The results and conclusions of our study can be applied to identify critical times to maintain river–ocean connectivity and stream flow for the benefit of the amphidromous fish population dynamics, stream ecology, and natural resources of the Caribbean.

Gear and Seasonal Bias Associated with Abundance and Size Structure Estimates for Lentic Freshwater Fishes

Abstract All freshwater fish sampling methods are biased toward particular species, sizes, and sexes and are further influenced by season, habitat, and fish behavior changes over time. However, little is known about gear-specific biases for many common fish species because few multiple-gear comparison studies exist that have incorporated seasonal dynamics. We sampled six lakes and impoundments representing a diversity of trophic and physical conditions in Iowa, USA, using multiple gear types (i.e., standard modified fyke net, mini-modified fyke net, sinking experimental gill net, bag seine, benthic trawl, boat-mounted electrofisher used diurnally and nocturnally) to determine the influence of sampling methodology and season on fisheries assessments. Specifically, we describe the influence of season on catch per unit effort, proportional size distribution, and the number of samples required to obtain 125 stock-length individuals for 12 species of recreational and ecological importance. Mean catch per unit ...

Population characteristics of black bullhead (Ameiurus melas) in Iowa natural lakes.

ABSTRACT Black bullhead (Ameiurus mefas) populations in three natural lakes in northwestern Iowa were sampled to describe abundance, size structure, condition, mortality, recruitment variability, and growth in relation to a range of physical and limnological conditions. Six-hundred-and-fifty-three black bullhead were sampled with modified fyke nets during summer 2008 from Silver Lake, Lake Minnewashta, and West Okoboji Lake. Catch-per-unit-effort of black bullhead in Silver Lake (21.9 fish per net-night; fish/NN) was significantly higher than in Lake Minnewashta (P<0.0l; 10.4 fish/NN) and West Okoboji Lake (P<0.01: 5.6 fish/NN). Proportional size distribution (PSD) was similar among populations, but PSD of preferred-length fish in Silver Lake was much greater than in the other lakes. Mean relative weights were generally high across all lakes (90–92) but were highest in Silver Lake. Total annual mortality was highest in Lake Minnewashta (79%) and lowest in Silver Lake (24%). Recruitment variability of black bullhead, measured with the recruitment variability index, was 0.69 in West Okoboji Lake, 0.62 in Lake Minnewashta, and 0.47 in Silver Lake. Black bullhead length at age 3 differed (P<0.01) among lakes and was highest in Silver Lake (274 mm) followed by Lake Minnewashta (247 mm) and West Okoboji Lake (228 mm). Silver Lake is considered to have the poorest water quality of the study lakes due to high nutrient concentrations and low water clarity. The influence of black bullhead on water quality conditions is unknown, but our results suggest that these conditions are ideal for black bullhead populations in Iowa lakes.

The Effect of Fixative an Total Length of Small-Bodied Stream Fishes

ABSTRACT Longnose dace (Rhinichthys cataructae). red shiner (Cyprinella futrensis), and green sunfish (Lepomis cyanellus) were fixed in 5% and 10% fonnalin and 70% and 95% ethyl alcohol to determine fixative effects on total length (TI,). Total length reduced over the first 24h for all species (P<0.0001) but then stabilized. Longnose dace and green sunfish TL reduction was less for 5% formalin than for either 70% or 95% ethanol (both P<0.0001), whereas the fixative solution had no effect on red shiner TL (P=0.347). A greater percentage of change in TL was observed in green sunfish and red shiner than in longnose dace, suggesting that body form (compressiform vs. fusiform) may affect shrinkage rate among adult stream fishes.