Jessica A. Maisano

Assembling the Squamate Tree of Life: Perspectives from the Phenotype and the Fossil Record

Abstract We assembled a dataset of 192 carefully selected species—51 extinct and 141 extant—and 976 apomorphies distributed among 610 phenotypic characters to investigate the phylogeny of Squamata (“lizards,” including snakes and amphisbaenians). These data enabled us to infer a tree much like those derived from previous morphological analyses, but with better support for some key clades. There are also several novel elements, some of which pose striking departures from traditional ideas about lizard evolution (e.g., that mosasaurs and polyglyphanodontians are on the scleroglossan stem, rather than parts of the crown, and related to varanoids and teiids, respectively). Long-bodied, limb-reduced, “snake-like” fossorial lizards—most notably dibamids, amphisbaenians and snakes—have been and continue to be the chief source of character conflict in squamate morphological phylogenetics. Carnivorous lizards (especially snakes, mosasaurs and varanoids) have proven a close second. Genetic data, presumably less burdened by the potential for adaptive convergence related to fossoriality, were expected to resolve these conflicts. Although recent gene phylogenies seem to do so, they also differ radically from any phylogeny based on the phenotype, especially for the most ancient crown squamate divergences that occured during the latter half of the Mesozoic. Our study relied on traditionally prepared specimens as well as high-resolution computed tomography scans that afforded unprecendented access to the cranial anatomy of Squamata. This, along with the inclusion of stem fossils, provided an unparalleled sample of the phenotype enabling us to more fully explore the extreme incongruences between molecular and morphological topologies for the squamate tree of life. Despite this extensive new database, we were unable to find morphological support for the major rearrangement of the deep divergences in Squamata proposed by recent molecular studies. Instead, our data strongly support the same fundamental topology suggested by most previous morphological studies—an Iguania-Scleroglossa basal split, a sister-group relationship between Gekkota and Autarchoglossa, and the divergence between Anguimorpha and Scincomorpha—and documents the extreme degree of morphological homoplasy required by those molecular topologies.

Three-dimensional analysis of plant structure using high-resolution X-ray computed tomography

High-resolution X-ray computed tomography (HRCT) is a non-invasive approach to 3D visualization and quantification of biological structure. The data, based on differential X-ray attenuation, are analogous to those otherwise obtainable only by serial sectioning. Requiring no fixing, sectioning or staining, HRCT produces a 3D digital map of the specimen that allows measurements and visualizations, including arbitrarily oriented sections. In spite of its application throughout the natural sciences, HRCT has yet to be applied in extant plant structural research.

Postnatal skeletal ontogeny in five Xantusiids (squamata: scleroglossa).

The construction of a comparative database of squamate postnatal skeletal development is continued with the detailed description of the mineralization of the skeleton from birth to near maximum size in Lepidophyma gaigeae and four Xantusia taxa. Observed patterns in the sequence of appearance of epiphyseal secondary centers, ossification centers, apophyseal ossifications, and calcifications, the distribution of sesamoids, and the timing of fusions are compared and contrasted with other squamates. Xantusiids share a similar sequence of braincase fusions, but differ in the sequence of appearance of ossification centers and epiphyseal secondary centers. Relative to other squamates they exhibit an immature neonatal state of ossification, a delayed appearance of ossification centers and epiphyseal secondary centers, and an accelerated appearance of apophyses. All five xantusiid taxa possess two sesamoids previously unreported in squamates. These observations add to the growing body of evidence that morphogenesis and osteogenesis are largely independent developmental phenomena. J. Morphol. 254:1–38, 2002.

The Osteoderms and Palpebral in Lanthanotus borneensis (Squamata: Anguimorpha)

is rarely collected, probably because itis nocturnal, fossorial, and semiaquatic (Harrisson,1962; Manthey and Grossman, 1997). Few specimensexist in collections worldwide, and skeletons are ex-tremely rare. As a result of limited access to speci-mens, many phylogenetic analyses that include thisspecies relied upon the same specimen (REE 1445, col-lection of Richard Etheridge, San Diego State Univer-sity) to score osteological characters (e.g., Pregill et al.,1986; Estes et al., 1988; Norell and Gao, 1997; Gao andNorell, 1998).This problem is not unique to

Morphology of the skull of the white-nosed blindsnake, Liotyphlops albirostris (Scolecophidia: Anomalepididae)

This article presents a detailed description and illustration of the skull of Liotyphlops albirostris in comparison to the skulls of Typhlophis squamosus, Leptotyphlops dulcis, and Typhlops jamaicensis, based on high‐resolution X‐ray computed tomography (HRXCT). The skull of T. squamosus is illustrated and discussed in detail for the first time. A number of uniquely shared derived characters is identified that support the monophyly of the clade Anomalepididae. Anomalepidids retain some features that are plesiomorphic relative to other scolecophidians, such as the presence of a supratemporal (except in Anomalepis) and ectopterygoid. The homology of the element located posteroventral to the eyeball in anomalepidids and variably referred to as a jugal or postorbital (or a fusion of both in Anomalepis) remains unknown. Scolecophidians exhibit a highly derived skull morphology adapted to head‐first burrowing. Both anomalepidids and typhlopids evolved a condition known as an “outer shell design,” but did so in different ways. Leptotyphlopids combine elements of both the anomalepidid and typhlopid snout morphologies. J. Morphol., 2009.

Perimortem fractures in Lucy suggest mortality from fall out of tall tree

The Pliocene fossil ‘Lucy’ (Australopithecus afarensis) was discovered in the Afar region of Ethiopia in 1974 and is among the oldest and most complete fossil hominin skeletons discovered. Here we propose, on the basis of close study of her skeleton, that her cause of death was a vertical deceleration event or impact following a fall from considerable height that produced compressive and hinge (greenstick) fractures in multiple skeletal elements. Impacts that are so severe as to cause concomitant fractures usually also damage internal organs; together, these injuries are hypothesized to have caused her death. Lucy has been at the centre of a vigorous debate about the role, if any, of arboreal locomotion in early human evolution. It is therefore ironic that her death can be attributed to injuries resulting from a fall, probably out of a tall tree, thus offering unusual evidence for the presence of arborealism in this species.

Wettability measurement under high P‐T conditions using X‐ray imaging with application to the brine‐supercritical CO2 system

We present a new method for measuring wettability or contact angle of minerals at reservoir pressure-temperature conditions using high-resolution X-ray computed tomography (HRXCT) and radiography. In this method, a capillary or a narrow slot is constructed from a mineral or a rock sample of interest wherein two fluids are allowed to form an interface that is imaged using X-rays. After some validation measurements at room pressure-temperature conditions, we illustrate this method by measuring the contact angle of CO2-brine on quartz, muscovite, shale, borosilicate glass, polytetrafluoroethylene (PTFE or Teflon), and polyether ether ketone (PEEK) surfaces at 60–71°C and 13.8–22.8 MPa. At reservoir conditions, PTFE and PEEK surfaces were found to be CO2-wet with contact angles of 140° and 127°, respectively. Quartz and muscovite were found to be water-wet with contact angles of 26° and 58°, respectively, under similar conditions. Borosilicate glass-air-brine at room conditions showed strong water-wet characteristics with a contact angle of 9°, whereas borosilicate glass-CO2-brine at 13.8 MPa and 60°C showed a decrease in its water-wetness with contact angle of 54°. This method provides a new application for X-ray imaging and an alternative to other methods.

NEW MORPHOLOGICAL DATA FOR EOSANIWA KOEHNI HAUBOLD, 1977 AND A REVISED PHYLOGENETIC ANALYSIS

Abstract Eosaniwa koehni is an enigmatic platynotan that differs from related varanoids in the possession of a very long snout resulting in extremely elongate nasals and vomers; a robust and broad jugal; the presence of denticles on palatines, pterygoids, and vomers; the presence of a subdental shelf on the dentary; and a strongly twisted retroarticular process on the mandible. Phylogenetic analysis suggests that Eosaniwa is a derived varanoid platynotan, nested within a clade also including mosasauroids, Coniasaurus, and Paravaranus.

The secondary origin of diamonds: multi-modal radiation tomography of diamondiferous mantle eclogites

Three-dimensional neutron and X-ray tomography reveals the textural and spatial relationship of diamonds and associated minerals in situ, in a unique suite of 17 diamondiferous eclogites. We emphasize the reporting of X-ray imaging on mantle xenoliths, which in combination with neutron imaging enables the clear identification of diamonds and interstitial metasomatic secondary minerals. In particular, neutrons are highly sensitive to hydrogen (H), allowing for the identification of OH- and H2O-bearing metasomatic minerals. The identification of metasomatic minerals allows for the delineation of distinct metasomatic pathways through the eclogite xenoliths. Diamonds are readily identified as the darkest greyscales due to their low attenuation, and are typically surrounded by secondary minerals, never in contact with primary minerals, and always confined within metasomatic pathways. The ubiquitous occurrence of diamonds in association with pathways suggests a potential genetic link. Both octahedral and dodecahedral diamonds are observed within individual xenoliths, suggesting multiple heterogeneous growth and dissolution processes at small scales. The distinct age dichotomy between eclogite xenoliths and metasomatic mineral assemblages implies that the observed textural relationship of diamonds and late-stage metasomatic pathways for this suite of 17 eclogites casts doubt on the theory that eclogitic diamonds formed billions of years ago. Diamonds are interpreted to have formed from multiple growth episodes, with the last of these episodes represented by the metasomatic assemblages observed in this study. This further indicates that eclogitic diamond inclusions may span large time scales from ancient ages (>2 Ga) all the way to the last growth event, perhaps even close to the time of kimberlite emplacement (~360 Ma), which has significant implications for age-dating of diamonds and the study of diamonds as a whole.

Comparison and Evaluation of the Effectiveness of Two Approaches of Diffusible Iodine-Based Contrast-Enhanced Computed Tomography (diceCT) for Avian Cephalic Material.

Diffusible iodine-based contrast-enhanced computed tomography presents a comparatively new tool kit for imaging fine-scale three-dimensional phenotypes that is rapidly becoming standard anatomical practice. However, relatively few studies have attempted to look at subtle differences in staining protocols or attempted to model tissue reactions to gain insight into staining mechanisms. Here, two iodine-based contrast agents, iodine-ethanol (I2 E) and iodine-potassium iodide (I2 KI) in neutral buffered formalin , were applied to avian cephalic specimens to investigate their effectiveness. We found that the two solutions had markedly different results for staining of mineralized skeletal tissues (i.e., bone). Other tissues, including muscles, epithelia, and common connective tissues (e.g., lamina propria) were assessed individually and show minor differences in the sorption of iodine. Numerical simulations suggest that different results from I2 E and I2 KI-formaldehyde staining are due to different partition coefficients and retardation factors of tissues, fixation effects, as well as distinct iodine diffusion and sorption patterns. We found a clear positive relationship between glycogen concentration and grayscale values measured within muscle, epithelia, nervous tissues, and glands. We also found the use of ethanol for tissue fixation and following I2 E staining outperforms I2 KI-formaldehyde by providing higher efficiency for acquiring greater contrast both between different soft tissues and between mineralized and nonmineralized tissues.