Jesualdo Tomás Fernández-Breis

An ontology, intelligent agent-based framework for the provision of semantic web services

Intelligent agents and semantic web services are two technologies with great potential. Striking new applications can be developed by using the tools and techniques they provide. However, semantic web services need for an upper software entity able to deal with them and, on the other hand agent technology has historically suffered from a number of drawbacks that must be addressed. Integrating these two technologies in a joint environment can overcome their problems while strengthening their advantages. In this paper, the necessity for integrating these technologies and the potential benefits of their combination are analyzed. Based on this study, we present SEMMAS, an ontology-based framework for seamlessly integrating Intelligent Agents and Semantic Web Services. The basics of the framework are detailed and a proof-of-concept implementation described.

LinkEHR-Ed: A multi-reference model archetype editor based on formal semantics

PURPOSE To develop a powerful archetype editing framework capable of handling multiple reference models and oriented towards the semantic description and standardization of legacy data. METHODS The main prerequisite for implementing tools providing enhanced support for archetypes is the clear specification of archetype semantics. We propose a formalization of the definition section of archetypes based on types over tree-structured data. It covers the specialization of archetypes, the relationship between reference models and archetypes and conformance of data instances to archetypes. RESULTS LinkEHR-Ed, a visual archetype editor based on the former formalization with advanced processing capabilities that supports multiple reference models, the editing and semantic validation of archetypes, the specification of mappings to data sources, and the automatic generation of data transformation scripts, is developed. CONCLUSIONS LinkEHR-Ed is a useful tool for building, processing and validating archetypes based on any reference model.

A model-driven approach for representing clinical archetypes for Semantic Web environments

The life-long clinical information of any person supported by electronic means configures his Electronic Health Record (EHR). This information is usually distributed among several independent and heterogeneous systems that may be syntactically or semantically incompatible. There are currently different standards for representing and exchanging EHR information among different systems. In advanced EHR approaches, clinical information is represented by means of archetypes. Most of these approaches use the Archetype Definition Language (ADL) to specify archetypes. However, ADL has some drawbacks when attempting to perform semantic activities in Semantic Web environments. In this work, Semantic Web technologies are used to specify clinical archetypes for advanced EHR architectures. The advantages of using the Ontology Web Language (OWL) instead of ADL are described and discussed in this work. Moreover, a solution combining Semantic Web and Model-driven Engineering technologies is proposed to transform ADL into OWL for the CEN EN13606 EHR architecture.

An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes

The communication between health information systems of hospitals and primary care organizations is currently an important challenge to improve the quality of clinical practice and patient safety. However, clinical information is usually distributed among several independent systems that may be syntactically or semantically incompatible. This fact prevents healthcare professionals from accessing clinical information of patients in an understandable and normalized way. In this work, we address the semantic interoperability of two EHR standards: OpenEHR and ISO EN 13606. Both standards follow the dual model approach which distinguishes information and knowledge, this being represented through archetypes. The solution presented here is capable of transforming OpenEHR archetypes into ISO EN 13606 and vice versa by combining Semantic Web and Model-driven Engineering technologies. The resulting software implementation has been tested using publicly available collections of archetypes for both standards.

Clinical data interoperability based on archetype transformation

The semantic interoperability between health information systems is a major challenge to improve the quality of clinical practice and patient safety. In recent years many projects have faced this problem and provided solutions based on specific standards and technologies in order to satisfy the needs of a particular scenario. Most of such solutions cannot be easily adapted to new scenarios, thus more global solutions are needed. In this work, we have focused on the semantic interoperability of electronic healthcare records standards based on the dual model architecture and we have developed a solution that has been applied to ISO 13606 and openEHR. The technological infrastructure combines reference models, archetypes and ontologies, with the support of Model-driven Engineering techniques. For this purpose, the interoperability infrastructure developed in previous work by our group has been reused and extended to cover the requirements of data transformation.

Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources

The increasing volume and diversity of information in biomedical research is demanding new approaches for data integration in this domain. Semantic Web technologies and applications can leverage the potential of biomedical information integration and discovery, facing the problem of semantic heterogeneity of biomedical information sources. In such an environment, agent technology can assist users in discovering and invoking the services available on the Internet. In this paper we present SEMMAS, an ontology-based, domain-independent framework for seamlessly integrating Intelligent Agents and Semantic Web Services. Our approach is backed with a proof-of-concept implementation where the breakthrough and efficiency of integrating disparate biomedical information sources have been tested.

OWLPath: An OWL Ontology-Guided Query Editor

Most Semantic Web technology-based applications need users to have a deep background on the formal underpinnings of ontology languages and some basic skills in these technologies. Generally, only experts in the field meet these requirements. In this paper, we present OWLPath, a natural language-query editor guided by multilanguage OWL-formatted ontologies. This application allows nonexpert users to easily create SPARQL queries that can be issued over most existing ontology storage systems. Our approach is a fully fledged solution backed with a proof-of-concept implementation and the empirical results of two challenging use cases: one in the domain of e-finance and the other in e-tourism.

Financial news semantic search engine

An increasingly large amount of financial information available in a number of heterogeneous business sources implies that the traditional methods of analysis are no longer applicable. These financial data sources are characterized by the use of disparate data models and their unstructured content with implicit knowledge. In addition, the most up-to-date financial information typically resides in the vast amount of financial-related news that brokers take into account when investing. As Semantic Technologies mature, they provide a consistent and reliable basis for the development of superior, more precise mechanisms to deal with heterogeneous data. In this paper, we present a financial news semantic search engine based on Semantic Web technologies. The search engine is accompanied by an ontology population tool that assists in keeping the financial ontology up-to-date. In addition, a further module has been developed that is capable of crawling the Web in search of financial news and annotating it with knowledge entities from the financial ontology that match with the contents of the news. Our contribution is an overall solution based on a fully fledged architecture that has been validated in a use case scenario for the Spanish stock exchange.

Measuring individual learning performance in group work from a knowledge integration perspective

Evaluation is an important part of the teaching-learning process, and it becomes more difficult when individuals are developing a joint project and individual marks have to be assigned to the group members. Different strategies can be used to perform this task. In this work, an approach that combines the global group results and the individual performance is presented. This approach makes use of a semantic framework to rank the individual participation of each group member and to compare their results with those they should have obtained to achieve the final mark. An experiment performed in real settings is also reported in this paper.

Ontology learning from biomedical natural language documents using UMLS

The generation of new knowledge is continuous in biomedical domains, thus biomedical literature is becoming harder to understand. Ontologies provide vocabulary standardization, so they can be helpful to facilitate the understanding of biomedical texts. In this work, a methodology for building biomedical ontologies from texts is presented. This approach relies on natural language processing and incremental knowledge acquisition techniques to obtain the relevant concepts and relations to be included in an OWL ontology. Additionally, we provide an algorithm to connect the isolated concepts regions in the ontology using UMLS. We also discuss in this paper the experiment carried out to validate our approach and its positive results in terms of performance and scalability.